ServiceX Transformer that converts flat ROOT ntuples into columnwise data

Vis

Last update: Jan 20, 2022

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Deep Learning ssl-hep

Overview

ServiceX_Uproot_Transformer

ServiceX Transformer that converts flat ROOT ntuples into columnwise data

Usage

You can invoke the transformer from the command line. For example:

> docker run --rm -it sslhep/servicex_func_adl_uproot_transformer:latest python transformer.py --help
usage: transformer.py [-h] [--brokerlist BROKERLIST] [--topic TOPIC]
                      [--chunks CHUNKS] [--tree TREE] [--attrs ATTR_NAMES]
                      [--path PATH] [--limit LIMIT]
                      [--result-destination {kafka,object-store,output-dir}]
                      [--output-dir OUTPUT_DIR]
                      [--result-format {arrow,parquet,root-file}]
                      [--max-message-size MAX_MESSAGE_SIZE]
                      [--rabbit-uri RABBIT_URI] [--request-id REQUEST_ID]

Uproot Transformer

optional arguments:
  -h, --help            show this help message and exit
  --brokerlist BROKERLIST
                        List of Kafka broker to connect to
  --topic TOPIC         Kafka topic to publish arrays to
  --chunks CHUNKS       Arrow Buffer Chunksize
  --tree TREE           Tree from which columns will be inspected
  --attrs ATTR_NAMES    List of attributes to extract
  --path PATH           Path to single Root file to transform
  --limit LIMIT         Max number of events to process
  --result-destination {kafka,object-store,output-dir}
                        kafka, object-store
  --output-dir OUTPUT_DIR
                        Local directory to output results
  --result-format {arrow,parquet,root-file}
                        arrow, parquet, root-file
  --max-message-size MAX_MESSAGE_SIZE
                        Max message size in megabytes
  --rabbit-uri RABBIT_URI
  --request-id REQUEST_ID
                        Request ID to read from queue

You will need an X509 proxy available as a mountable volume. The X509 Secret container can do using your credentials and cert:

docker run --rm \
    --mount type=bind,source=$HOME/.globus,readonly,target=/etc/grid-certs \
    --mount type=bind,source="$(pwd)"/secrets/secrets.txt,target=/servicex/secrets.txt \
    --mount type=volume,source=x509,target=/etc/grid-security \
    --name=x509-secrets sslhep/x509-secrets:latest

Development

 python3 -m pip install -r requirements.txt
 python3 -m pip install --index-url https://test.pypi.org/simple/ --no-deps servicex

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ServiceX Transformer that converts flat ROOT ntuples into columnwise data

Related tags

Overview

ServiceX_Uproot_Transformer

Usage

Development

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