Manim is an engine for precise programatic animations, designed for creating explanatory math videos. Note, there are two versions of manim. This repo
Bioinformatics This is a repository of all the algorithms covered in the Bioinformatics Course part of the Cambridge Computer Science Tripos Algorithm
Mathics is a general-purpose computer algebra system (CAS). It is an open-source alternative to Mathematica. It is free both as in "free beer" and as in "freedom".
Datamol is a python library to work with molecules. It's a layer built on top of RDKit and aims to be as light as possible.
PennyLane is a cross-platform Python library for differentiable programming of quantum computers. Train a quantum computer the same way as a neural network.
The latest information about Galaxy can be found on the Galaxy Community Hub. Community support is available at Galaxy Help. Galaxy Quickstart Galaxy
CKAN: The Open Source Data Portal Software CKAN is the world’s leading open-source data portal platform. CKAN makes it easy to publish, share and work
PsychoPy is an open-source package for creating experiments in behavioral science. It aims to provide a single package that is: precise enoug
Collection of useful code related to biological analysis. Much of this is discussed with examples at Blue collar bioinformatics. All code, images and
Scholia is a python package and webapp for interaction with scholarly information in Wikidata. Webapp As a webapp, it currently runs from Wikimedia To
Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext
Why efficient Python? Because using Python more efficiently will make your code more readable and run more efficiently.
Artisan Visual scope for coffee roasters WARNING: pre-release builds may not work. Use at your own risk. Summary Artisan is a software that helps coff
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in
About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an
PyMC3 is a Python package for Bayesian statistical modeling and Probabilistic Machine Learning focusing on advanced Markov chain Monte Carlo (MCMC) an
Orange Data Mining Orange is a data mining and visualization toolbox for novice and expert alike. To explore data with Orange, one requires no program
an interactive explorer for single-cell transcriptomics data cellxgene (pronounced "cell-by-gene") is an interactive data explorer for single-cell tra
InVesalius InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesaliu
Veusz 3.3.1 Veusz is a scientific plotting package. It is designed to produce publication-ready PDF or SVG output. Graphs are built-up by combining pl
Spack Spack is a multi-platform package manager that builds and installs multiple versions and configurations of software. It works on Linux, macOS, a
CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure
A Python framework for creating reproducible, maintainable and modular data science code.
logo CoCalc Collaborative Calculation and Data Science CoCalc is a virtual online workspace for calculations, research, collaboration and authoring do
SymPy See the AUTHORS file for the list of authors. And many more people helped on the SymPy mailing list, reported bugs, helped organize SymPy's part
Zipline is a Pythonic algorithmic trading library. It is an event-driven system for backtesting. Zipline is currently used in production as the backte
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"
Pybliographer Pybliographer provides a framework for working with bibliographic databases. This software is licensed under the GPLv2. For more informa
Scientific Computational Imaging COde (SCICO) SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications
collection of interesting Computer Science resources
Odemis Odemis (Open Delmic Microscope Software) is the open-source microscopy software of Delmic B.V. Odemis is used for controlling microscopes of De
ReproZip ReproZip is a tool aimed at simplifying the process of creating reproducible experiments from command-line executions, a frequently-used comm
Table of contents What is PEM? Overview Installation Usage Executable Library Telegram Bot Try OPEM in Your Browser! MATLAB Issues & Bug Reports Contr
Mayavi: 3D visualization of scientific data in Python Mayavi docs: http://docs.enthought.com/mayavi/mayavi/ TVTK docs: http://docs.enthought.com/mayav
Beehive A framework for feature exploration in Data Science Background What do we do when we finish one episode of feature exploration in a jupyter no
DGFEM Maxwell Equations Discontinuous Galerkin finite element method (DGFEM) for Maxwell Equations. Work in progress. Currently, the 1D Maxwell equati
MOSAIC: A modular single-molecule analysis interface MOSAIC is a single molecule analysis toolbox that automatically decodes multi-state nanopore data
CS 506 - Computational Tools for Data Science Code, slides, and notes for Boston University CS506 Fall 2021 The Final Project Repository can be found
Brachistochrone-curve This is a simple computer program made with Python on the brachistochrone curve. I decided to write it after a physics lesson on
Float2Binary A simple python class which finds the binary representation of a floating-point number. You can find a class in IEEE754.py file with the
CONCEPT (COsmological N-body CodE in PyThon) is a free and open-source simulation code for cosmological structure formation. The code should run on any Linux system, from massively parallel computer clusters to laptops.
ANUGA Contents ANUGA What is ANUGA? Installation Documentation and Help Mailing Lists Web sites Latest source code Bug reports Developer information L
A simple mathematical expression evaluator that uses Pokemon types to replace symbols.
Cookiecutter Data Science A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. Project homepage
AntiderivativeEstimator Program that estimates antiderivatives utilising Maclaurin series. Setup: Needs Python 3 and Git installed and added to PATH.