Mouse Brain in the Model Zoo

Related tags

Deep Learning DeepMouseTrap
Overview

Deep Neural Mouse Brain Modeling

This is the repository for the ongoing deep neural mouse modeling project, an attempt to characterize the representational structure of rodent visual cortex with a combination of optical and electrophysiology data from the Allen Brain Observatory and a veritable boatload of neural networks.

An accompanying Google Colab notebook (bit.ly/Neural-Cheese) contains a brief tutorial on the use of many parts of this code, including the parsing of the neurophysiology data, deep net feature extraction, and deep net modeling of the neurophysiology data.

A manuscript (recently accepted to NeurIPS2021) that uses these methods may be found here.

@article{conwell2021neural,
  title={Neural Regression, Representational Similarity, Model Zoology \& Neural Taskonomy at Scale in Rodent Visual Cortex},
  author={Conwell, Colin and Mayo, David and Katz, Boris and Buice, Michael A and Alvarez, George A and Barbu, Andrei},
  journal={bioRxiv},
  year={2021},
  publisher={Cold Spring Harbor Laboratory}
}
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Comments
  • Pre-Averaged Filtered Data

    Pre-Averaged Filtered Data

    Hi, is there a way for me to get the data for this before averaging by trials but still with the same filtering calculations so it would be a tensor of shape (Num Neurons x Num Images x Num Trials x Num Responses)?

    opened by aaprasad 3
  • compute_neural_rdms missing

    compute_neural_rdms missing

    Hi,

    Can you provide the code for "compute_neural_rdms"? There is a problem in

    from compute_neural_rdms import *

    for running get_srp_ridge_scores.py.

    Thanks a lot!

    opened by Inf-YifanYang 3
Owner
Colin Conwell
Doctoral Student Researcher @ Harvard University, Psychology
Colin Conwell
GitHub
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