Accurate Phylogenetic Inference with Symmetry-Preserving Neural Networks

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Deep Learning nn-phylogenetics

Overview

Accurate Phylogenetic Inference with a Symmetry-preserving Neural Network Model

Claudia Solis-Lemus
Shengwen Yang
Leonardo Zepeda-Núñez

This repository contains the scripts, data, and plots for the paper:

@misc{solislemus2022accurate,
      title={Accurate Phylogenetic Inference with a Symmetry-preserving Neural Network Model}, 
      author={Claudia Solis-Lemus and Shengwen Yang and Leonardo Zepeda-Nunez},
      year={2022},
      eprint={2201.04663},
      archivePrefix={arXiv},
      primaryClass={q-bio.PE}
}

Folder structure

scripts contains the python scripts with the neural network implementations.
plotscontains the link to the Google Drive with the output files needed to reproduce the plots as well as the Rmd script with the R code for the plots.
simulations-realdata contains the scripts and code to do the simulations and real data analysis in the manuscript.
LICENSE: this repository is under the MIT license.

Issues and questions

Issues and questions are encouraged through the GitHub issue tracker. For bugs or errors, please make sure to provide enough details for us to reproduce the error on our end.

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Accurate Phylogenetic Inference with Symmetry-Preserving Neural Networks

Related tags

Overview

Accurate Phylogenetic Inference with a Symmetry-preserving Neural Network Model

Folder structure

Issues and questions

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