Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images

niklas netter

Last update: Nov 28, 2022

Related tags

Image Processing napari-plugin

Overview

napari-3d-ortho-viewer

Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

This plugin is heavily inspired by ortho-view-napari.

Check out this post on image.sc (https://forum.image.sc/t/napari-visualization-in-3-planes/57768) for more infos about multiview support in napari.

This viewer has some additional features:

double click to jump to specific position in all slices
additional 3d view of 3d stack with lines or planes indicating current position

Installation

You can install napari-3d-ortho-viewer via pip:

pip install napari-3d-ortho-viewer

To install latest development version :

pip install git+https://github.com/gatoniel/napari-3d-ortho-viewer.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-3d-ortho-viewer" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

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Comments

Add napari to requirements

Hi team,

My name is Draga and I am a CZI contractor working on napari.

As part of our work on the new napari plugin engine, we’ve been running some automated tests to see whether plugins will be easily converted to the new plugin engine. While running these tests, we noticed that your plugin fails to be imported after installation in a fresh environment due to some missing requirements. You can see details in this github action run.

This PR therefore adds these packages to your install requirements so that users can install your plugin more confidently.

Note that this may not be a complete list - to check whether your plugin can be easily installed on other machines, we recommend using GitHub workflows to test your plugin in a fresh environment - the napari plugin cookiecutter provides an example of such a workflow.

If you believe this PR has been opened in error, please feel free to close it and let us know where we went wrong!

opened by DragaDoncila 0