Python T-DNA Resources

jie jie is a spatial genome aligner. This package parses true chromatin imaging signal from noise by aligning signals to a reference DNA polymer model

DNA sequence classification by Deep Neural Network: Project Overview worked on the DNA sequence classification problem where the input is the DNA sequ

A script written in Python that returns a consensus string and profile matrix of a given DNA string(s) in FASTA format.

E2EDNA2 - An automated pipeline for simulation of DNA aptamers complexed with small molecules and short peptides

Ejemplo Algoritmo Viterbi Ejemplo de un algoritmo Viterbi aplicado a modelo ocul

Discovering local read-level DNA methylation patterns and DNA methylation heterogeneity in intermediately methylated regions

This program analyzes a DNA sequence and outputs snippets of DNA that are likely to be protein-coding genes.

CodExt Encode/decode anything. This library extends the native codecs library (namely for adding new custom encodings and character mappings) and prov

Transcription Factor binding predictions with Attention and Transformers A repository with exploration into using transformers to predict DNA ↔ transc

T-DNA Source code for the ACL-IJCNLP 2021 paper entitled Taming Pre-trained Language Models with N-gram Representations for Low-Resource Domain Adapta

DeepGeneAnnotator: A tool to annotate the gene in the genome The master thesis of the "Using deep learning to predict gene structures of the coding ge

Equi-RC Equivariant layers for RC-complement symmetry in DNA sequence data This is a repository that implements the layers as described in "Reverse-Co

AptaMAT Purpose AptaMat is a simple script which aims to measure differences between DNA or RNA secondary structures. The method is based on the compa

A set of Python scripts to configure a freshly installed Cisco Identity Services Engine (ISE) for simple operation; in my case, a basic Cisco Software-Defined Access environment.

Introduction orfipy is a tool written in python/cython to extract ORFs in an extremely and fast and flexible manner. Other popular ORF searching tools

DNA Storage Simulator This monorepository contains code for a research project by Mayank Keoliya and supervised by Djordje Jevdjic, that analyzes and

Enformer - Pytorch (wip) Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch. The original tensorflow

ABOUT TOOL : DNA-RECON is an automatic web reconnaissance tool written in python. This tool made for reconnaissance and information gathering with an

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