An open source algorithm and dataset for finding poop in pictures.

Overview

🗑️ 📱 💩 ShitSpotter 💩 📱 🗑️

The shitspotter module is where I will be work on the "shitspotter" poop-detection algorithm and dataset. The primary goal of this work is to allow for the creation of a phone app that finds where your dog pooped, because you ran to grab the doggy-bags you forgot, and now you can't find the damn thing. Other applications can be envisioned, such as AR glasses that lets you know if you are about to walk into a steamer, or perhaps city governments could use this to more efficiently clean public areas.

This module will contain an algorithm for training a pytorch network to detect poop in images, and a script for detecting poop in unseen images given a pretrained model.

The dataset currently contains 20GB of outdoor images taken with a phone. The general process of acquiring the dataset has been: 1. My dog poops or I see a rogue poop, 2. I take a "before" picture of the poop, 3. I pick up the poop, 4. I take an "after" picture as a high-correlation negative, and 5. I take a 3rd image of a different nearby area to get a lower-correlation-negative. The dataset is currently unannotated, but but before/after pairs will help with bootstrapping. Annotations and the data manifest will be managed using kwcoco.

Both the code and the dataset will be open source. The code will be published as it is written to this repo. The data and pretrained models will be made public on IPFS.

Recent Updates

Check back for updates, but because this is a personal project, it might take some time for it to fully drop.

  • 2021-11-23 - Added annotation process overview and dataset sample.
  • 2021-11-11 - Initial upload of data munging scripts.
  • 2020-12-18 - Took the first picture.

Introduction

In Fall 2019, I was at the local dog park, and I found myself in a situation where my dog pooped, but I had forgotten to bring bags with me. I walked to the local bag station (thank you DGS), grabbed one, but then I couldn't find where the poop was. The brown fallen leaves made it very difficult to find the poop.

This happened every so often. Often I would be able to find it, but I'm afraid sometimes, I was unable to relocate the "object of interest". This got me thinking, what if I had a phone app that could scan the area with the camera and try to locate the poop? If I had a dataset, training a poop detection model with today's deep learning methods should work pretty well.

Thus, on 2020-12-18, I took my first picture. My dog pooped, I took a picture, I picked it up, and then I took an "after" picture. The idea is that I will align the pictures (probably via computing local features like sift or some deep variant and then estimating an affine/projective transform) and then take a difference image. That should let me seed some sort of semi-automated annotation process.

Then in 2021-05-11, one of my colleague suggested that I take a 3rd unrelated picture to use as negative examples, so I took that suggestion and started doing that. This is the process currently being used. The following figure illustrates an example of one of these "triples".

https://i.imgur.com/NnEC8XZ.jpg

Related Work

I was surprised to find that there does not seem to be much work on this problem in the outdoor setting. Because none of the related work exactly meets my needs, I haven't looked too in depth into much of it, it could be that some of these are more relevant than I've given them credit for. As time moves on I'll continue to refine this section.

Apparently Roomba has an indoor poop dataset: https://www.engadget.com/irobot-roomba-j-7-object-poop-detection-040152887.html It would be interesting to combine the indoor / outdoor datasets, but we are more concerned about outdoor detection. Maybe Boston Dynamics and Roomba can take this dataset and do something interesting.

The MSHIT fake dog poop dataset: https://www.kaggle.com/mikian/dog-poop is similar to this domain, but not the real-deal. This may be relevant, but I have not looked too deeply into it yet.

There is Human Poop Classification: https://seed.com/poop/ and https://www.theverge.com/2019/10/29/20937108/poop-database-ai-training-photo-upload-first-mit but this is not our domain.

Detect Images of Dogs Pooping: https://colab.research.google.com/github/matthewchung74/blogs/blob/dev/Dog_Pooping_Dectron.ipynb Unfortunately, this is detecting the action, and not the consequence.

A Dog Poop DNA database could be used in conjunction with this work: https://www.bbc.com/news/uk-england-somerset-56324906

A 2019 Project by Neeraj Madan: https://www.youtube.com/watch?v=qGNbHwp0jM8 This is the most similar thing to this project that I've seen so far. I have not watched his entire video yet, but I may contact him so see if they're interested in collaborating.

TACO: http://tacodataset.org/ The TACO dataset is Trash Annotations in Context. It could be the case that this data could be incorporated into the TACO dataset, although it does not currently contain a category for feces.

Other related links I haven't gone through well enough yet:

Dataset Description

The dataset contains a wide variety of image and background conditions that occur in update New York, including: seasonal changes, snow, rain, daytime, nighttime (some taken with flash, others taken with my phone's night mode), grass, concrete, etc...

Known dataset biases are:

  • Geographic region: Most images were taken in Upstate New York climate.
  • Sensor: Most images were taken with my Pixel 5. A few images were from my old Motorola Droid.
  • Coordinate: Humans unconsciously center "objects of interest" in images they take. In some instances I tried to mitigate this bias, either by explicitly changing the center of the poop, or not looking at the screen when taking a snapshot.
  • Me: I'm the only one taking pictures. I'm also fairly tall, so the images are all from my viewpoint. There are other "me" biases I may not be aware of.
  • My Dogs: My two poop machines are fairly regular, and they have their own methods for times and places to make a dookie.
  • Freshness: The shit I deal with is often fresh out of the oven. Although, I have picked up a decent number of abandoned stools from other dog owners in the area, some of these are quite old. And age of the sample does seem to have an impact on its appearance. New poops have a shine, while old ones are quite dull, and will start to break down.

The following scatterplot illustrates trends in the space / time distribution of the images.

https://i.imgur.com/LXvcqGW.png

The following figure is a hand-picked sample of 9 images from the dataset. Each of these images has poop in it. In some cases it's easy to spot. In other cases, it can be quite difficult.

https://i.imgur.com/QwFpxD1.jpg

Dataset Statistics:

  • Most images only show a single poop, but other images have multiple.
  • As of 2021-11-11 I've collected 1935 pictures with "798" before/after/(maybe negative) groups of images.
  • There are roughly 457 paired-groups and 333 triple-groups. (Based only on counts, grouping has not happened yet).

Annotation Process

To make annotation easier, I've taken before a picture before and after I clean up the poop. The idea is that I can align these images and use image-differencing to more quickly find the objects of interest in the image. As you can see, it's not so easy to spot the shit, especially when there are leaves in the image.

https://i.imgur.com/lZ8J0vD.png

But with a little patience and image processing, it's not to hard to narrow down the search.

https://i.imgur.com/A6qlcNk.jpg

Scripts to produce these visualizations have been checked into the repo. Annotations and the image manifest will be stored in the kwcoco json format.

The Algorithm

Currently there is no algorithm checked into the repo. I need to start annotating the dataset first. Eventually there will be a shitspotter.fit and shitspotter.predict script for training and performing inference on unseen images. My current plan for a baseline algorithm is a mobilenet backbone pretrained on imagenet and some single-stage detection / segmentation head on top of that.

Given kwcoco a formated detection dataset, we can also use off-the-shelf detection baselines via netharn, mmdet, or some other library that accepts coco/kwcoco input manifests.

Downloading the Data

This dataset will be made public once I figure out a way to host and manage it. Currently the raw images live on my hard drive, and are backed up across 2 machines, each running RAID-10. Lower res copies of the photos live on the cloud, but I'm planning on sharing the originals.

The dataset is currently 20+GB, so I'm planning to use IPFS (or some P2P solution) to handle data distribution. Currently the data does not have any annotations, although I've started to build scripts to make that process easier.

Eventually I would like to host the data via DVC + IPFS, but fsspec needs an IPFS filesystem implementation first.

If you are in urgent need of any of the data, feel free to contact me (make an issue or email me). I can pin what I have on IPFS, but I was planning on organizing the data a bit before I did that, but I'm willing

Officially the licence will be Apache 2 because that's what I use for everything. It annoys me that I have to put licenses on things. These are the terms I care about:

  • Cite my work if you use it.
  • If you annotate any of the images, contribute the annotations back. Picking up shit is a team effort.
  • When asked to build something, particularly ML systems, think about the ethical implications, and act ethically.
  • Pin the dataset on IPFS if you can.

Otherwise the data is free to use commercially or otherwise.

Acknowledgements

I want to give thanks to the people and animals-that-think-they-are-people who contributed to this project. My colleagues at Kitware have provided valuable help / insight into project direction, dataset collection, problem formulation, related research, discussion, and memes.

I want to give special thanks to my two poop machines, without whom this project would not be possible.

https://i.imgur.com/MWQVs0w.jpg

https://i.imgur.com/YUJjWoh.jpg

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    • #433 build(deps-dev): bump @​types/node from 16.3.3 to 16.4.0
    • #425 build(deps-dev): bump @​typescript-eslint/eslint-plugin from 4.28.3 to 4.28.4
    • #426 build(deps-dev): bump @​typescript-eslint/parser from 4.28.3 to 4.28.4
    • #438 Set up Dependabot for github-actions dependencies

    v2.0.1

    Fixes

    • #424 fix: Issue in building all deep dependencies

    ... (truncated)

    Changelog

    Sourced from codecov/codecov-action's changelog.

    2.1.0

    Features

    • #515 Allow specifying version of Codecov uploader

    Dependencies

    • #499 build(deps-dev): bump @​vercel/ncc from 0.29.0 to 0.30.0
    • #508 build(deps): bump openpgp from 5.0.0-5 to 5.0.0
    • #514 build(deps-dev): bump @​types/node from 16.6.0 to 16.9.0

    2.0.3

    Fixes

    • #464 Fix wrong link in the readme
    • #485 fix: Add override OS and linux default to platform

    Dependencies

    • #447 build(deps): bump openpgp from 5.0.0-4 to 5.0.0-5
    • #458 build(deps-dev): bump eslint from 7.31.0 to 7.32.0
    • #465 build(deps-dev): bump @​typescript-eslint/eslint-plugin from 4.28.4 to 4.29.1
    • #466 build(deps-dev): bump @​typescript-eslint/parser from 4.28.4 to 4.29.1
    • #468 build(deps-dev): bump @​types/jest from 26.0.24 to 27.0.0
    • #470 build(deps-dev): bump @​types/node from 16.4.0 to 16.6.0
    • #472 build(deps): bump path-parse from 1.0.6 to 1.0.7
    • #473 build(deps-dev): bump @​types/jest from 27.0.0 to 27.0.1
    • #478 build(deps-dev): bump @​typescript-eslint/parser from 4.29.1 to 4.29.2
    • #479 build(deps-dev): bump @​typescript-eslint/eslint-plugin from 4.29.1 to 4.29.2
    • #481 build(deps-dev): bump @​types/node from 16.6.0 to 16.6.2
    • #483 build(deps-dev): bump @​vercel/ncc from 0.29.0 to 0.29.2
    • #484 build(deps): bump @​actions/core from 1.4.0 to 1.5.0

    2.0.2

    Fixes

    • Underlying uploader fixes issues with tokens not being sent properly for users seeing Error!: Error: Error uploading to https://codecov.io: Error: Error uploading to Codecov: Error: Not Found
    • #440 fix: Validation ordering

    2.0.1

    Fixes

    • #424 fix: Issue in building all deep dependencies

    2.0.0

    On February 1, 2022, the v1 uploader will be full sunset and no longer function. This is due to the deprecation of the underlying bash uploader. This version uses the new uploader.

    The v2 Action downloads, verifies, and runs the Codecov binary.

    Breaking Changes

    • Multiple fields have not been transferred from the bash uploader or have been deprecated. Notably many of the functionalities and gcov_ arguments have been removed. Please check the documentation for the full list.

    ... (truncated)

    Commits
    • f32b3a3 Merge pull request #515 from codecov/specify-version
    • 72dfd47 Allow specifying version of Codecov uploader
    • 46edaed Merge pull request #499 from codecov/dependabot/npm_and_yarn/vercel/ncc-0.30.0
    • b6fd8cc Merge pull request #508 from codecov/dependabot/npm_and_yarn/openpgp-5.0.0
    • 07a4e97 build(deps-dev): bump @​vercel/ncc from 0.29.0 to 0.30.0
    • c071c70 build(deps): bump openpgp from 5.0.0-5 to 5.0.0
    • f6d4366 Merge pull request #514 from codecov/dependabot/npm_and_yarn/types/node-16.9.0
    • 2bbefc9 build(deps-dev): bump @​types/node from 16.6.0 to 16.9.0
    • 5a8bb47 Merge pull request #485 from codecov/alternate-os
    • 3e9a281 Merge pull request #481 from codecov/dependabot/npm_and_yarn/types/node-16.6.2
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    dependencies 
    opened by dependabot[bot] 1
  • Bump actions/setup-python from 3.1.2 to 4.0.0

    Bump actions/setup-python from 3.1.2 to 4.0.0

    Bumps actions/setup-python from 3.1.2 to 4.0.0.

    Release notes

    Sourced from actions/setup-python's releases.

    v4.0.0

    What's Changed

    • Support for python-version-file input: #336

    Example of usage:

    - uses: actions/setup-python@v4
      with:
        python-version-file: '.python-version' # Read python version from a file
    - run: python my_script.py
    

    There is no default python version for this setup-python major version, the action requires to specify either python-version input or python-version-file input. If the python-version input is not specified the action will try to read required version from file from python-version-file input.

    • Use pypyX.Y for PyPy python-version input: #349

    Example of usage:

    - uses: actions/setup-python@v4
      with:
        python-version: 'pypy3.9' # pypy-X.Y kept for backward compatibility
    - run: python my_script.py
    
    • RUNNER_TOOL_CACHE environment variable is equal AGENT_TOOLSDIRECTORY: #338

    • Bugfix: create missing pypyX.Y symlinks: #347

    • PKG_CONFIG_PATH environment variable: #400

    • Added python-path output: #405 python-path output contains Python executable path.

    • Updated zeit/ncc to vercel/ncc package: #393

    • Bugfix: fixed output for prerelease version of poetry: #409

    • Made pythonLocation environment variable consistent for Python and PyPy: #418

    • Bugfix for 3.x-dev syntax: #417

    • Other improvements: #318 #396 #384 #387 #388

    Commits
    • d09bd5e fix: 3.x-dev can install a 3.y version (#417)
    • f72db17 Made env.var pythonLocation consistent for Python and PyPy (#418)
    • 53e1529 add support for python-version-file (#336)
    • 3f82819 Fix output for prerelease version of poetry (#409)
    • 397252c Update zeit/ncc to vercel/ncc (#393)
    • de977ad Merge pull request #412 from vsafonkin/v-vsafonkin/fix-poetry-cache-test
    • 22c6af9 Change PyPy version to rebuild cache
    • 081a3cf Merge pull request #405 from mayeut/interpreter-path
    • ff70656 feature: add a python-path output
    • fff15a2 Use pypyX.Y for PyPy python-version input (#349)
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    dependencies 
    opened by dependabot[bot] 0
  • Bump docker/setup-qemu-action from 1 to 2

    Bump docker/setup-qemu-action from 1 to 2

    Bumps docker/setup-qemu-action from 1 to 2.

    Release notes

    Sourced from docker/setup-qemu-action's releases.

    v2.0.0

    • Node 16 as default runtime by @​crazy-max (#48)
      • This requires a minimum Actions Runner version of v2.285.0, which is by default available in GHES 3.4 or later.
    • chore: update dev dependencies and workflow by @​crazy-max (#43 #47)
    • Bump @​actions/core from 1.3.0 to 1.6.0 (#37 #39 #41)
    • Bump @​actions/exec from 1.0.4 to 1.1.1 (#38 #46)

    Full Changelog: https://github.com/docker/setup-qemu-action/compare/v1.2.0...v2.0.0

    v1.2.0

    • Display image information (#36)
    • Bump @​actions/core from 1.2.7 to 1.3.0 (#35)

    v1.1.0

    • Remove os limitation (#30)
    • Bump @​actions/core from 1.2.6 to 1.2.7 (#29)

    v1.0.2

    • Enhance workflow (#26)
    • Container based developer flow (#19 #20)

    v1.0.1

    • Fix CVE-2020-15228
    Commits
    • 8b12248 Merge pull request #48 from crazy-max/node-16
    • 466d531 Merge pull request #50 from crazy-max/update-readme
    • 607c192 simplify usage example
    • d7849ec Node 16 as default runtime
    • 2d4bfe7 Merge pull request #47 from crazy-max/update-dev
    • 224b802 chore: update dev dependencies and workflow
    • 95bd865 Merge pull request #46 from docker/dependabot/npm_and_yarn/actions/exec-1.1.1
    • cfd091f Bump @​actions/exec from 1.1.0 to 1.1.1
    • d2a6030 Merge pull request #45 from docker/dependabot/github_actions/actions/checkout-3
    • 97dc484 Bump actions/checkout from 2 to 3
    • Additional commits viewable in compare view

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    dependencies 
    opened by dependabot[bot] 0
  • Bump actions/setup-python from 3.1.1 to 3.1.2

    Bump actions/setup-python from 3.1.1 to 3.1.2

    Bumps actions/setup-python from 3.1.1 to 3.1.2.

    Release notes

    Sourced from actions/setup-python's releases.

    Update actions/cache version to 2.0.2

    In scope of this release we updated actions/cache package as the new version contains fixes related to GHES 3.5 (actions/setup-python#382)

    Commits

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    dependencies 
    opened by dependabot[bot] 0
  • Bump actions/upload-artifact from 2 to 3

    Bump actions/upload-artifact from 2 to 3

    Bumps actions/upload-artifact from 2 to 3.

    Release notes

    Sourced from actions/upload-artifact's releases.

    v3.0.0

    What's Changed

    • Update default runtime to node16 (#293)
    • Update package-lock.json file version to 2 (#302)

    Breaking Changes

    With the update to Node 16, all scripts will now be run with Node 16 rather than Node 12.

    v2.3.1

    Fix for empty fails on Windows failing on upload #281

    v2.3.0 Upload Artifact

    • Optimizations for faster uploads of larger files that are already compressed
    • Significantly improved logging when there are chunked uploads
    • Clarifications in logs around the upload size and prohibited characters that aren't allowed in the artifact name or any uploaded files
    • Various other small bugfixes & optimizations

    v2.2.4

    • Retry on HTTP 500 responses from the service

    v2.2.3

    • Fixes for proxy related issues

    v2.2.2

    • Improved retryability and error handling

    v2.2.1

    • Update used actions/core package to the latest version

    v2.2.0

    • Support for artifact retention

    v2.1.4

    • Add Third Party License Information

    v2.1.3

    • Use updated version of the @action/artifact NPM package

    v2.1.2

    • Increase upload chunk size from 4MB to 8MB
    • Detect case insensitive file uploads

    v2.1.1

    • Fix for certain symlinks not correctly being identified as directories before starting uploads

    v2.1.0

    • Support for uploading artifacts with multiple paths
    • Support for using exclude paths
    • Updates to dependencies

    ... (truncated)

    Commits

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    dependencies 
    opened by dependabot[bot] 0
  • Bump actions/download-artifact from 2 to 3

    Bump actions/download-artifact from 2 to 3

    Bumps actions/download-artifact from 2 to 3.

    Release notes

    Sourced from actions/download-artifact's releases.

    v3.0.0

    What's Changed

    Breaking Changes

    With the update to Node 16, all scripts will now be run with Node 16 rather than Node 12.

    v2.1.0 Download Artifact

    • Improved output & logging
    • Fixed issue where downloading all artifacts could cause display percentages to be over 100%
    • Various small bug fixes & improvements

    v2.0.10

    • Retry on HTTP 500 responses from the service

    v2.0.9

    • Fixes to proxy related issues

    v2.0.8

    • Improvements to retryability if an error is encountered during artifact download

    v2.0.7 download-artifact

    • Improved download retry-ability if a partial download is encountered

    v2.0.6

    Update actions/core NPM package that is used internally

    v2.0.5

    • Add Third Party License Information

    v2.0.4

    • Use the latest version of the @actions/artifact NPM package

    v2.0.3

    • Misc improvements

    v2.0.2

    • Support for tilde expansion

    v2.0.1

    • Download path output
    • Improved logging
    Commits

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    dependencies 
    opened by dependabot[bot] 0
  • Bump actions/setup-python from 4.0.0 to 4.4.0

    Bump actions/setup-python from 4.0.0 to 4.4.0

    Bumps actions/setup-python from 4.0.0 to 4.4.0.

    Release notes

    Sourced from actions/setup-python's releases.

    Add support to install multiple python versions

    In scope of this release we added support to install multiple python versions. For this you can try to use this snippet:

        - uses: actions/setup-python@v4
          with:
            python-version: |
                3.8
                3.9
                3.10
    

    Besides, we changed logic with throwing the error for GHES if cache is unavailable to warn (actions/setup-python#566).

    Improve error handling and messages

    In scope of this release we added improved error message to put operating system and its version in the logs (actions/setup-python#559). Besides, the release

    v4.3.0

    • Update @​actions/core to 1.10.0 version #517
    • Update @​actions/cache to 3.0.4 version #499
    • Only use github.token on github.com #443
    • Improvement of documentation #477 #479 #491 #492

    Add check-latest input and bug fixes

    In scope of this release we add the check-latest input. If check-latest is set to true, the action first checks if the cached version is the latest one. If the locally cached version is not the most up-to-date, the version will then be downloaded from python-versions repository. By default check-latest is set to false. For PyPy it will to try to reach https://downloads.python.org/pypy/versions.json

    Example of usage:

    steps:
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v4
        with:
          python-version: '3.9'
          check-latest: true
      - run: python --version
    

    Besides, it includes such changes as

    v4.1.0

    In scope of this pull request we updated actions/cache package as the new version contains fixes for caching error handling. Moreover, we added a new input update-environment. This option allows to specify if the action shall update environment variables (default) or not.

    Update-environment input

    ... (truncated)

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    dependencies 
    opened by dependabot[bot] 0
Owner
Jon Crall
Staff R&D Engineer; Open Source Enthusiast
Jon Crall
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Using A * search algorithm and GBFS search algorithm to solve the Romanian problem

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