Source code of NeurIPS 2021 Paper ''Be Confident! Towards Trustworthy Graph Neural Networks via Confidence Calibration''

Last update: Dec 19, 2022

Related tags

Deep Learning CaGCN

Overview

CaGCN

This repo is for source code of NeurIPS 2021 paper "Be Confident! Towards Trustworthy Graph Neural Networks via Confidence Calibration".

Paper Link: https://arxiv.org/abs/2109.14285

Environment

python == 3.8.8
pytorch == 1.8.1
dgl -cuda11.1 == 0.6.1
networkx == 2.5
numpy == 1.20.2

GPU: GeForce RTX 2080 Ti

CPU: Intel(R) Xeon(R) Silver 4210 CPU @ 2.20GHz

Confidence Calibration

CaGCN

python CaGCN.py --model GCN --hidden 64 --dataset dataset --labelrate labelrate --stage 1 --lr_for_cal 0.01 --l2_for_cal 5e-3
python CaGCN.py --model GAT --hidden 8 --dataset dataset --labelrate labelrate --dropout 0.6 --lr 0.005 --stage 1 --lr_for_cal 0.01 --l2_for_cal 5e-3

dataset: including [Cora, Citeseer, Pubmed], required.
labelrate: including [20, 40, 60], required.

e.g.,

python CaGCN.py --model GCN --hidden 64 --dataset Cora --labelrate 20 --stage 1 --lr_for_cal 0.01 --l2_for_cal 5e-3
python CaGCN.py --model GAT --hidden 8 --dataset Cora --labelrate 20 --dropout 0.6 --lr 0.005 --stage 1 --lr_for_cal 0.01 --l2_for_cal 5e-3

For CoraFull,

python CaGCN.py --model GCN --hidden 64 --dataset CoraFull --labelrate labelrate --stage 1 --lr_for_cal 0.01 --l2_for_cal 0.03
python CaGCN.py --model GAT --hidden 8 --dataset CoraFull --labelrate labelrate --dropout 0.6 --lr 0.005 --stage 1 --lr_for_cal 0.01 --l2_for_cal 0.03

labelrate: including [20, 40, 60], required.

Uncalibrated model

python train_others.py --model GCN --hidden 64 --dataset dataset --labelrate labelrate --stage 1 
python train_others.py --model GAT --hidden 8 --dataset dataset --labelrate labelrate --stage 1 --dropout 0.6 --lr 0.005

dataset: including [Cora, Citeseer, Pubmed, CoraFull], required.
labelrate: including [20, 40, 60], required.

e.g.,

python train_others.py --model GCN --hidden 64 --dataset Cora --labelrate 20 --stage 1
python train_others.py --model GAT --hidden 8 --dataset Cora --labelrate 20 --stage 1 --dropout 0.6 --lr 0.005

Temperature scaling & Matring Scaling

python train_others.py --model GCN --scaling_method method --hidden 64 --dataset dataset --labelrate labelrate --stage 1 --lr_for_cal 0.01 --max_iter 50
python train_others.py --model GAT --scaling_method method --hidden 8 --dataset dataset --labelrate labelrate --dropout 0.6 --lr 0.005 --stage 1 --lr_for_cal 0.01 --max_iter 50

method: including [TS, MS], required.
dataset: including [Cora, Citeseer, Pubmed, CoraFull], required.
labelrate: including [20, 40, 60], required.

e.g.,

python train_others.py --model GCN --scaling_method TS --hidden 64 --dataset Cora --labelrate 20 --stage 1 --lr_for_cal 0.01 --max_iter 50
python train_others.py --model GAT --scaling_method TS --hidden 8 --dataset Cora --labelrate 20 --dropout 0.6 --lr 0.005 --stage 1 --lr_for_cal 0.01 --max_iter 50

Self-Training

GCN L/C=20

python CaGCN.py --model GCN --hidden 64 --dataset Cora --labelrate 20 --stage 4 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset Citeseer --labelrate 20 --stage 5 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.9
python CaGCN.py --model GCN --hidden 64 --dataset Pubmed --labelrate 20 --stage 6 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset CoraFull --labelrate 20 --stage 4 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.85

GCN L/C=40

python CaGCN.py --model GCN --hidden 64 --dataset Cora --labelrate 40 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset Citeseer --labelrate 40 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.85
python CaGCN.py --model GCN --hidden 64 --dataset Pubmed --labelrate 40 --stage 4 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset CoraFull --labelrate 40 --stage 4 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.99

GCN L/C=60

python CaGCN.py --model GCN --hidden 64 --dataset Cora --labelrate 60 --stage 4 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset Citeseer --labelrate 60 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.8
python CaGCN.py --model GCN --hidden 64 --dataset Pubmed --labelrate 60 --stage 3 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.6
python CaGCN.py --model GCN --hidden 64 --dataset CoraFull --labelrate 60 --stage 5 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.9

GAT L/C=20

python CaGCN.py --model GAT --hidden 8 --dataset Cora --labelrate 20 --dropout 0.6 --lr 0.005 --stage 6 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.8
python CaGCN.py --model GAT --hidden 8 --dataset Citeseer --labelrate 20 --dropout 0.6 --lr 0.005 --stage 3 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.7
python CaGCN.py --model GAT --hidden 8 --dataset Pubmed --labelrate 20 --dropout 0.6 --lr 0.005 --weight_decay 1e-3 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.8 
python CaGCN.py --model GAT --hidden 8 --dataset CoraFull --labelrate 20 --dropout 0.6 --lr 0.005 --stage 5 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.95

GAT L/C=40

python CaGCN.py --model GAT --hidden 8 --dataset Cora --labelrate 40 --dropout 0.6 --lr 0.005 --stage 4 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.9
python CaGCN.py --model GAT --hidden 8 --dataset Citeseer --labelrate 40 --dropout 0.6 --lr 0.005 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.8
python CaGCN.py --model GAT --hidden 8 --dataset Pubmed --labelrate 40 --dropout 0.6 --lr 0.005 --weight_decay 1e-3 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.8 
python CaGCN.py --model GAT --hidden 8 --dataset CoraFull --labelrate 40 --dropout 0.6 --lr 0.005 --stage 2 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.95

GAT L/C=60

python CaGCN.py --model GAT --hidden 8 --dataset Cora --labelrate 60 --dropout 0.6 --lr 0.005 --stage 2 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 200 --threshold 0.8
python CaGCN.py --model GAT --hidden 8 --dataset Citeseer --labelrate 60 --dropout 0.6 --lr 0.005 --stage 6 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 150 --threshold 0.8
python CaGCN.py --model GAT --hidden 8 --dataset Pubmed --labelrate 60 --dropout 0.6 --lr 0.005 --weight_decay 1e-3 --stage 3 --lr_for_cal 0.001 --l2_for_cal 5e-3 --epoch_for_st 100 --threshold 0.85 
python CaGCN.py --model GAT --hidden 8 --dataset CoraFull --labelrate 60 --dropout 0.6 --lr 0.005 --stage 2 --lr_for_cal 0.001 --l2_for_cal 0.03 --epoch_for_st 500 --threshold 0.95

More Parameters

For more parameters of baselines, please refer to the Parameter.md

Contact

If you have any questions, please feel free to contact me with [email protected]

You might also like...

Code for ICCV 2021 paper "Distilling Holistic Knowledge with Graph Neural Networks"

HKD Code for ICCV 2021 paper "Distilling Holistic Knowledge with Graph Neural Networks" cifia-100 result The implementation of compared methods are ba

30 Dec 18, 2022

Code for our EMNLP 2021 paper “Heterogeneous Graph Neural Networks for Keyphrase Generation”

GATER This repository contains the code for our EMNLP 2021 paper “Heterogeneous Graph Neural Networks for Keyphrase Generation”. Our implementation is

12 Nov 24, 2022

This is project is the implementation of the DeepShift: Towards Multiplication-Less Neural Networks paper

DeepShift This is project is the implementation of the DeepShift: Towards Multiplication-Less Neural Networks paper, that aims to replace multiplicati

88 Dec 23, 2022

Defending graph neural networks against adversarial attacks (NeurIPS 2020)

GNNGuard: Defending Graph Neural Networks against Adversarial Attacks Authors: Xiang Zhang ([email protected]), Marinka Zitnik (marinka@hms.

44 Dec 7, 2022

[CIKM 2019] Code and dataset for "Fi-GNN: Modeling Feature Interactions via Graph Neural Networks for CTR Prediction"

FiGNN for CTR prediction The code and data for our paper in CIKM2019: Fi-GNN: Modeling Feature Interactions via Graph Neural Networks for CTR Predicti

Big Data and Multi-modal Computing Group, CRIPAC

75 Dec 30, 2022

A tensorflow=1.13 implementation of Deconvolutional Networks on Graph Data (NeurIPS 2021)

GDN A tensorflow=1.13 implementation of Deconvolutional Networks on Graph Data (NeurIPS 2021) Abstract In this paper, we consider an inverse problem i

4 Sep 13, 2022

Code for "The Box Size Confidence Bias Harms Your Object Detector"

The Box Size Confidence Bias Harms Your Object Detector - Code Disclaimer: This repository is for research purposes only. It is designed to maintain r

24 Dec 7, 2022

This is the repository for the NeurIPS-21 paper [Contrastive Graph Poisson Networks: Semi-Supervised Learning with Extremely Limited Labels].

CGPN This is the repository for the NeurIPS-21 paper [Contrastive Graph Poisson Networks: Semi-Supervised Learning with Extremely Limited Labels]. Req

10 Sep 12, 2022

Official source code to CVPR'20 paper, "When2com: Multi-Agent Perception via Communication Graph Grouping"

When2com: Multi-Agent Perception via Communication Graph Grouping This is the PyTorch implementation of our paper: When2com: Multi-Agent Perception vi

34 Nov 9, 2022

Source code of NeurIPS 2021 Paper ''Be Confident! Towards Trustworthy Graph Neural Networks via Confidence Calibration''

Related tags

Overview

CaGCN

Environment

Confidence Calibration

CaGCN

Uncalibrated model

Temperature scaling & Matring Scaling

Self-Training

GCN L/C=20

GCN L/C=40

GCN L/C=60

GAT L/C=20

GAT L/C=40

GAT L/C=60

More Parameters

Contact

You might also like...

Code for ICCV 2021 paper "Distilling Holistic Knowledge with Graph Neural Networks"

Code for our EMNLP 2021 paper “Heterogeneous Graph Neural Networks for Keyphrase Generation”

This is project is the implementation of the DeepShift: Towards Multiplication-Less Neural Networks paper

Defending graph neural networks against adversarial attacks (NeurIPS 2020)

[CIKM 2019] Code and dataset for "Fi-GNN: Modeling Feature Interactions via Graph Neural Networks for CTR Prediction"

A tensorflow=1.13 implementation of Deconvolutional Networks on Graph Data (NeurIPS 2021)

Code for "The Box Size Confidence Bias Harms Your Object Detector"

This is the repository for the NeurIPS-21 paper [Contrastive Graph Poisson Networks: Semi-Supervised Learning with Extremely Limited Labels].

Official source code to CVPR'20 paper, "When2com: Multi-Agent Perception via Communication Graph Grouping"

Owner

S2-BNN: Bridging the Gap Between Self-Supervised Real and 1-bit Neural Networks via Guided Distribution Calibration (CVPR 2021)

Confident Semantic Ranking Loss for Part Parsing

The source code of the paper "Understanding Graph Neural Networks from Graph Signal Denoising Perspectives"

Pytorch Implementation of Spiking Neural Networks Calibration, ICML 2021

This repository contains the source code for the paper "DONeRF: Towards Real-Time Rendering of Compact Neural Radiance Fields using Depth Oracle Networks",

Learning Confidence for Out-of-Distribution Detection in Neural Networks

[CVPR 2022] Official code for the paper: "A Stitch in Time Saves Nine: A Train-Time Regularizing Loss for Improved Neural Network Calibration"

Code to reproduce the experiments from our NeurIPS 2021 paper " The Limitations of Large Width in Neural Networks: A Deep Gaussian Process Perspective"

This is the code of NeurIPS'21 paper "Towards Enabling Meta-Learning from Target Models".

We have implemented shaDow-GNN as a general and powerful pipeline for graph representation learning. For more details, please find our paper titled Deep Graph Neural Networks with Shallow Subgraph Samplers, available on arXiv (https//arxiv.org/abs/2012.01380).