Production Ontology Merging (PrOM) Framework

Related tags

Third-party APIs Wrappers prom
Overview

Production Ontology Merging (PrOM) Framework

OWL 2 DL ontology merging framework tailored to the production domain

Features

  • preprocessing: translations, spell checks, and interactive debugging
  • matching: string-similarity-based, terminological, and structural algorithms
  • correspondence selection: greedy and optimal regarding the overall similarity score
  • postprocessing: link ontology creation and interactive debugging
  • quality assessment: calculation of precision, recall, and F-measure

Contents

  • data/: production vocabulary, helper scripts for downloading ontos, and reference alignments
  • docs/: configuration files for various examples, utilities for processing OAEI outputs and reference alignments, graphical abstract
  • queries/: queries for information extraction
  • src/: sources for creating, loading, preprocessing, matching, and merging the ontologies
  • dependency-installer.sh: bash utility for installing dependencies
  • cleanup.sh: bash utility for removing temporary and generated files

Requirements

  • Python 3.7
  • bash recommended

Instructions

  • on Linux, run the bash script dependency_installer.sh to set up a virtual environment with the packages required
  • minimal example: simply run main.py
  • production process example:
    1. download ontologies and preprocess them using the bash script download_ontos.sh in data/
    2. adapt the config file, as a reference cp. the file alt_config.yml in docs/
    3. run main.py
  • for running OAEI benchmarks, cp. the instructions in the utility scripts in docs/

Citation

For scientific use, please cite using the following bibtex entry:

@article{ocker2021cii,
title = {{A Framework for Merging Ontologies in the Context of Smart Factories (accepted)}},
author = {Ocker, Felix and Vogel-Heuser, Birgit and Paredis, Christiaan JJ},
journal={Computers in Industry},
year = {2021},
publisher={Elsevier}
}

License

GPL v3.0

Contact

Felix Ocker - [email protected]
Technical University of Munich - Institute of Automation and Information Systems

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Comments
  • AssertionError: OP with more than one noun

    AssertionError: OP with more than one noun

    It seems like multiple nouns within rdfs:label statements for OPs can cause an AssertionError: OP with more than one noun:.

    As a, hopefully reproducible, minimal example I've used onto-a.owl and onto-fr.owl. If I change <rdfs:label xml:lang="en">is created by</rdfs:label> to <rdfs:label xml:lang="en">creation has creator</rdfs:label>, I receive the following traceback:

    robert@DESKTOP-XXXXXX:~/git/prom/src$ python3.8 prom.py
* Owlready2 * Warning: optimized Cython parser module 'owlready2_optimized' is not available, defaulting to slower Python implementation
checking consistency
----
file://./../data/onto-a.owl
No inconsistencies detected.
----
file://./../data/onto-fr.owl
No inconsistencies detected.
----
Traceback (most recent call last):
  File "prom.py", line 231, in <module>
    prom.run_all()
  File "prom.py", line 207, in run_all
    tbox_matches = self.match_tbox()
  File "prom.py", line 89, in match_tbox
    matches = cbs.main(self.paths[0][1], self.paths[0][0], self.paths[1][1], self.paths[1][0], "semi")
  File "/home/robert/git/prom/src/compare_by_structure.py", line 468, in main
    semantic_combos = get_semantic_elem_combos(iri1, path1, iri2, path2)
  File "/home/robert/git/prom/src/compare_by_structure.py", line 428, in get_semantic_elem_combos
    semantic_matches = cbl.main(iri1, path1, iri2, path2)
  File "/home/robert/git/prom/src/compare_by_labels.py", line 387, in main
    matches.extend(implicit_compare(analyzed_labels_1[counter], analyzed_labels_2[counter], elem_type))
  File "/home/robert/git/prom/src/compare_by_labels.py", line 293, in implicit_compare
    assert len(tokens_by_type(combo[0][2], "NOUN")) == 1, f"OP with more than one noun: {combo[0][0]}"
AssertionError: OP with more than one noun: http://example.org/onto-a.owl#is_created_by
robert@DESKTOP-XXXXXX:~/git/prom/src$

    I've initially come across the AssertionError: OP with more than one noun: in a larger ontology with multiple object properties that contain more than two nouns in both the IRIs and rdfs:labels of OPs. Since changing the label causes the error within the minimal example, I assume that within this larger ontology the labels are also the culprits.

    It seems like this behavior does not apply to DPs, as I can't reproduce it with them.

    opened by robert-mieth 0
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