Inspectral
Spectral decomposition for characterizing long-range interaction profiles in Hi-C maps.
Snakemake workflow for the unsupervised method presented in Spracklin, Abdennur et al., 2021.
Steps
- Place supplementary bigwig file information in
config/track_metadata.tsv
to include in graphical outputs. Must be tab-delimited, including header. Must have columns:
Name
: a display nameID
: a unique identifier to use in the database (can be the same as Name)FileFormat
: must be the stringbigWig
Path
: a local path to the file
-
Edit
config.yaml
. -
Run:
# Generate pre-aggregated supplementary bigwig tracks if provided
$ snakemake make_track_db --force --cores all
# Run the pipeline
$ snakemake --cores all