Implementation of GGB color space

Related tags

Deep Learning python opencv image-processing pillow medical-image-processing skimage ggb-color
Overview

GGB Color Space

PyPI license Travis CI docker codecov

This package is implementation of GGB color space from Development of a Robust Algorithm for Detection of Nuclei and Classification of White Blood Cells in Peripheral Blood Smear Image.

Installation

Install GGB

This package could be installed via PyPI.

pip3 install ggb

or manually:

python3 setup.py install

Building Docker Image

Dockerfile is also provided in this project. To build the image:

cd docker/
bash docker.build.sh

or pull it directly from Docker Hub:

docker pull reshalfahsi/ggb

Building the Documentation

The documentations to this package could be built using Sphinx.

cd docs/
pip3 install -r requirements.txt
make html

The HTML pages are in docs/build/html.

Quick Demo

This package supports various computer vision libraries such as OpenCV and PIL. Complete examples for these computer vision libraries are provided in here. For the short example in Python3:

# import the package and its necessary components
from ggb import GGB, ColorSpace

# we are using OpenCV
import cv2

import urllib.request as urllib
import numpy as np

# load image from internet
req = urllib.urlopen('https://github.com/reshalfahsi/GGB/raw/master/docs/img/leukocytes.png')
arr = np.asarray(bytearray(req.read()), dtype=np.uint8)
img = cv2.imdecode(arr, -1)
    
# convert to GGB Color
ggb_image = GGB(image=img, input_color=ColorSpace.BGR).process()

# show the result    
ggb_image.show()

# save the image to OpenCV format
img = ggb_image.write()

This package also could be run through CLI:

ggb /path/to/image --output /path/to/output

Result

Leukocytes

alt text

Fundus

alt text

Car

alt text

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Comments
  • v1.1.2 release

    v1.1.2 release

    • GGBImage can not be called directly from ggb module.
    • Add ggb.testing module.
    • Move ggb.utils.test module to ggb.testing.base module.
    • Add get_image_from_url function in the ggb.testing.base module.
    • Add process method in the ggb.backend module.
    • Rewrite ggb.ggb module.
    • Add ComputerVisionLibraryError exception in the ggb.utils.error module.
    • Tidying up code for documentation.
    opened by reshalfahsi 0
Releases(v1.1.4)
Owner
Resha Dwika Hefni Al-Fahsi
AI Engineer at Techbros Group
Resha Dwika Hefni Al-Fahsi
GitHub https://ggb.readthedocs.io
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