prior-based-losses-for-medical-image-segmentation

Rosana EL JURDI

Last update: Sep 7, 2022

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Deep Learning Prior-based-Losses-for-Medical-Image-Segmentation

Overview

Repository for papers:

Benchmark: Effect of Prior-based Losses on Segmentation Performance: A Benchmark

Midl: A Surprisingly Effective Perimeter-based Loss for Medical Image Segmentation (https://openreview.net/forum?id=NDEmtyb4cXu)

In the .py script losses you can find all the losses used in the benchmark as well as the Contour-based loss.

You can just plugin the name of the loss in the losses argument in the main script and run the program.

TO DO \

Code should be cleaned and divided into project compartements . \
Functions should be documented
Documentation should be provided !!!

PFENet: Prior Guided Feature Enrichment Network for Few-shot Segmentation (TPAMI).

PFENet This is the implementation of our paper PFENet: Prior Guided Feature Enrichment Network for Few-shot Segmentation that has been accepted to IEE

230 Dec 31, 2022

This repo holds code for TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation

TransUNet This repo holds code for TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation Usage

1.4k Jan 4, 2023

CoTr: Efficiently Bridging CNN and Transformer for 3D Medical Image Segmentation

CoTr: Efficient 3D Medical Image Segmentation by bridging CNN and Transformer This is the official pytorch implementation of the CoTr: Paper: CoTr: Ef

218 Dec 25, 2022

[CVPR'21] FedDG: Federated Domain Generalization on Medical Image Segmentation via Episodic Learning in Continuous Frequency Space

FedDG: Federated Domain Generalization on Medical Image Segmentation via Episodic Learning in Continuous Frequency Space by Quande Liu, Cheng Chen, Ji

178 Jan 6, 2023

A collection of loss functions for medical image segmentation

3.1k Jan 3, 2023

Medical Image Segmentation using Squeeze-and-Expansion Transformers

Medical Image Segmentation using Squeeze-and-Expansion Transformers Introduction This repository contains the code of the IJCAI'2021 paper 'Medical Im

172 Dec 20, 2022

The codes for the work "Swin-Unet: Unet-like Pure Transformer for Medical Image Segmentation"

Swin-Unet The codes for the work "Swin-Unet: Unet-like Pure Transformer for Medical Image Segmentation"(https://arxiv.org/abs/2105.05537). A validatio

869 Jan 7, 2023

Segmentation for medical image.

EfficientSegmentation Introduction EfficientSegmentation is an open source, PyTorch-based segmentation framework for 3D medical image. Features A whol

68 Nov 28, 2022

A PyTorch implementation for V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation

A PyTorch implementation of V-Net Vnet is a PyTorch implementation of the paper V-Net: Fully Convolutional Neural Networks for Volumetric Medical Imag

606 Dec 21, 2022

Owner

Rosana EL JURDI

GitHub

Multi-atlas segmentation (MAS) is a promising framework for medical image segmentation

Multi-atlas segmentation (MAS) is a promising framework for medical image segmentation. Generally, MAS methods register multiple atlases, i.e., medical images with corresponding labels, to a target image;

13 Oct 9, 2022

Seach Losses of our paper 'Loss Function Discovery for Object Detection via Convergence-Simulation Driven Search', accepted by ICLR 2021.

CSE-Autoloss Designing proper loss functions for vision tasks has been a long-standing research direction to advance the capability of existing models

54 Dec 17, 2022

Dogs classification with Deep Metric Learning using some popular losses

Tsinghua Dogs classification with Deep Metric Learning 1. Introduction Tsinghua Dogs dataset Tsinghua Dogs is a fine-grained classification dataset fo

45 Nov 9, 2022

Alpha-IoU: A Family of Power Intersection over Union Losses for Bounding Box Regression

Alpha-IoU: A Family of Power Intersection over Union Losses for Bounding Box Regression YOLOv5 with alpha-IoU losses implemented in PyTorch. Example r

147 Dec 5, 2022

Hypersearch weight debugging and losses tutorial

tutorial Activate tensorboard option Running TensorBoard remotely When working on a remote server, you can use SSH tunneling to forward the port of th

1 Dec 11, 2021

Copy Paste positive polyp using poisson image blending for medical image segmentation

Copy Paste positive polyp using poisson image blending for medical image segmentation According poisson image blending I've completely used it for bio

2 Oct 19, 2021

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

1.2k Jan 4, 2023

prior-based-losses-for-medical-image-segmentation

Related tags

Overview

You might also like...

PFENet: Prior Guided Feature Enrichment Network for Few-shot Segmentation (TPAMI).

This repo holds code for TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation

CoTr: Efficiently Bridging CNN and Transformer for 3D Medical Image Segmentation

[CVPR'21] FedDG: Federated Domain Generalization on Medical Image Segmentation via Episodic Learning in Continuous Frequency Space

A collection of loss functions for medical image segmentation

Medical Image Segmentation using Squeeze-and-Expansion Transformers

The codes for the work "Swin-Unet: Unet-like Pure Transformer for Medical Image Segmentation"

Segmentation for medical image.

A PyTorch implementation for V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation

Owner

Rosana EL JURDI

Multi-atlas segmentation (MAS) is a promising framework for medical image segmentation

Seach Losses of our paper 'Loss Function Discovery for Object Detection via Convergence-Simulation Driven Search', accepted by ICLR 2021.

Dogs classification with Deep Metric Learning using some popular losses

Alpha-IoU: A Family of Power Intersection over Union Losses for Bounding Box Regression

Hypersearch weight debugging and losses tutorial

Copy Paste positive polyp using poisson image blending for medical image segmentation

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

A keras-based real-time model for medical image segmentation (CFPNet-M)

The implementation of PEMP in paper "Prior-Enhanced Few-Shot Segmentation with Meta-Prototypes"