Python Genomic-ULMFiT Resources

gget is a free and open-source command-line tool and Python package that enables efficient querying of genomic databases. gget consists of a collection of separate but interoperable modules, each designed to facilitate one type of database querying in a single line of code.

msprime msprime is a population genetics simulator based on tskit. Msprime can simulate random ancestral histories for a sample of individuals (consis

fast.ai ULMFiT with SentencePiece from pretraining to deployment Motivation: Why even bother with a non-BERT / Transformer language model? Short answe

Welcome to AdaptNLP A high level framework and library for running, training, and deploying state-of-the-art Natural Language Processing (NLP) models

tiedpyranges Extends the pyranges module with operations on joined genomic intervals (e.g. exons of same transcript) Install with: pip install tiedpyr

Genomic ULMFiT This is an implementation of ULMFiT for genomics classification using Pytorch and Fastai. The model architecture used is based on the A

Selene is a Python library and command line interface for training deep neural networks from biological sequence data such as genomes.

Ingest and query genomic intervals from multiple BED files.