Python Biological-plausible Resources

Adversarially-Robust-Periphery Code + Data from the paper "Finding Biological Plausibility for Adversarially Robust Features via Metameric Tasks" by A

Reverse engineering the dengue virus (under development 🚧 ) What is dengue? Dengue is a viral infection transmitted to humans through the bite of inf

MothPruning Scientific Overview Originally inspired by biological nervous systems, deep neural networks (DNNs) are powerful computational tools for mo

Colorizer The point of this project is to write a program capable of taking a black and white / grayscale image, and generating a realistic or plausib

BioThings SDK Quick Summary BioThings SDK provides a Python-based toolkit to build high-performance data APIs (or web services) from a single data sou

jBrain Software associated with the AAAI 2022 paper Francesco D'Amore, Daniel Mitropolsky, Pierluigi Crescenzi, Emanuele Natale, Christos H. Papadimit

SeqLike - flexible biological sequence objects in Python Introduction A single object API that makes working with biological sequences in Python more

Self-Supervised Learning (SimCLR) with Biological Plausible Image Augmentations Official code base for the poster "On the use of Cortical Magnificatio

Knowledge Graph Embeddings and Chemical Effect Prediction, 2020. Scripts and outputs related to the paper Prediction of Adverse Biological Effects of

PyCellID (building...) Functions to analyze Cell-ID single-cell cytometry data using python language. Dependecies for this project. attrs(=21.1.0) fo

BEAR Overview This repository contains code associated with the preprint A generative nonparametric Bayesian model for whole genomes (2021), which pro

DiffuseAnimals: Reaction-Diffusion Models for the Generation of Biological Patterns Introduction Reaction-diffusion equations can be utilized in order

What is autoRICEWQ? This project aims to be a handler for input creation and running of multiple RICEWQ simulations. What is RICEWQ? From the descript

Neural Distance Embeddings for Biological Sequences Official implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTo

Selene is a Python library and command line interface for training deep neural networks from biological sequence data such as genomes.

PhysCap: Physically Plausible Monocular 3D Motion Capture in Real Time The implementation is based on SIGGRAPH Aisa'20. Dependencies Python 3.7 Ubuntu

GANs for Biological Image Synthesis This codes implements the ICCV-2017 paper "GANs for Biological Image Synthesis". The paper and its supplementary m

CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure