Python Connectomics Resources

SOFIMA SOFIMA (Scalable Optical Flow-based Image Montaging and Alignment) is a tool for stitching, aligning and warping large 2d, 3d and 4d microscopy

FusionNet_Pytorch FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics Requirements Pytorch 0.1.11 Pyt

d o t m o t i f Find graph motifs using intuitive notation DotMotif is a library that identifies subgraphs or motifs in a large graph. It looks like t

Introduction The field of connectomics aims to reconstruct the wiring diagram of the brain by mapping the neural connections at the level of individua

QSIprep: Preprocessing and analysis of q-space images Full documentation at https://qsiprep.readthedocs.io About qsiprep configures pipelines for proc

Kimimaro: Skeletonize Densely Labeled Images # Produce SWC files from volumetric images. kimimaro forge labels.npy --progress # writes to ./kimimaro_o