Python Genomics Resources

CellRank's reproducibility repository We believe that reproducibility is key and have made it as simple as possible to reproduce our results. Please e

msprime msprime is a population genetics simulator based on tskit. Msprime can simulate random ancestral histories for a sample of individuals (consis

ezancestry Easily visualize your direct-to-consumer genetics next to 2500+ samples from the 1000 genomes project. Evaluate the performance of a custom

Orbivator_AI Breast Cancer Wisconsin (Diagnostic) GOAL To Determine which features of data (measurements) are most important for diagnosing breast can

HiCBrowser : A simple web browser to visualize Hi-C and other genomic tracks Fidel Ramirez, José Villaveces, Vivek Bhardwaj Installation You can insta

Full Spectrum Bioinformatics is a free online text designed to introduce key topics in Bioinformatics using the Python programming language. The text is written in interactive Jupyter Notebooks, which allow you to try out and modify example code and analyses.

Gosling.js Gosling.js is a declarative grammar for interactive (epi)genomics visualization on the Web. ⚠️ Please be aware that the grammar of Gosling.

gos is a declarative (epi)genomics visualization library for Python. It is built on top of the Gosling JSON specification, providing a simplified interface for authoring interactive genomic visualizations.

ContIG: Self-supervised Multimodal Contrastive Learning for Medical Imaging with Genetics This is the code implementation of the paper "ContIG: Self-s

OmiTrans Please also have a look at our multi-omics multi-task DL freamwork 👀 : OmiEmbed The FIRST GANs-based omics-to-omics translation framework Xi

OmiTrans Please also have a look at our multi-omics multi-task DL freamwork 👀 : OmiEmbed The FIRST GANs-based omics-to-omics translation framework Xi

meatballs An open source recipe book from the awesome staff of Clinical Genomics.

Install vintools To download this package from pypi: pip install vintools Install the development package To download and install the developmen

Map single-cell transcriptomes to copy number evolutionary trees. Check out the tutorial for more information. Installation $ pip install scatrex SCA

Toolchest Python Client Toolchest provides APIs for scientific and bioinformatic data analysis. It allows you to abstract away the costliness of runni

GDBIGtools: A command line tools for GDBIG varaints browser Introduction Born in Guangzhou Cohort Study Genome Research Database is based on thousands

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