Algorithms covered in the Bioinformatics Course part of the Cambridge Computer Science Tripos

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Bioinformatics

This is a repository of all the algorithms covered in the Bioinformatics Course part of the Cambridge Computer Science Tripos

Algorithms Implemented:

Phylogeny (Evolutionary Tree) Algorithms:

• Limb Length - O(n^2) and O(n) solutions
• UPGMA
• Neighbour Joining

• Demos - A list of functions that can be used to demo the algorithms
• Scoring Functions - Stores different scoring matrices encapsulated into a function to use in alignment problems
• Alignment-Graph- A class for representing alignment/edit graphs
• Rosalind - Answers Rosalind Questions
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