Multi-modal co-attention for drug-target interaction annotation and Its Application to SARS-CoV-2

Layne_Huang

Last update: Nov 14, 2022

Related tags

Deep Learning CoaDTI

Overview

CoaDTI

Multi-modal co-attention for drug-target interaction annotation and Its Application to SARS-CoV-2

Abstract

Environment

The test was conducted in the linux server with GTX2080Ti and the running environment is as follows:

python 3.7
pytorch 1.7.1
rdkit
pytorch geometric 1.6.3
Cuda 10.0.130

Data

Human dataset

C.elegans dataset

Binding_DB dataset

How to run

CoaDTI

Run ./code/data_prepare.py to preprocess the dataset.
Run ./code/train.py to train the CoaDTI.

CoaDTI-pro

Run ./code/data_prepare.py to preprocess the dataset.
Run ./code/train.py to train the CoaDTI-pro.

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Comments

Seems like lacking a script file(utils.py)

When I ran 'python train.py', I got such error information: Traceback (most recent call last): File "train.py", line 22, in from utilts import * ModuleNotFoundError: No module named 'utilts' It seems that a script file named utils.py is lacking in code folder.

opened by gsh150801 1

Owner

Layne_Huang

Bioinformatics, BioNLP

GitHub

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Multi-modal co-attention for drug-target interaction annotation and Its Application to SARS-CoV-2

Related tags

Overview

CoaDTI

Abstract

Environment

Data

Human dataset

C.elegans dataset

Binding_DB dataset

How to run

CoaDTI

CoaDTI-pro

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