ThunderSVM: A Fast SVM Library on GPUs and CPUs

Xtra Computing Group

Last update: Dec 22, 2022

Overview

What's new

We have recently released ThunderGBM, a fast GBDT and Random Forest library on GPUs.
add scikit-learn interface, see here

Overview

The mission of ThunderSVM is to help users easily and efficiently apply SVMs to solve problems. ThunderSVM exploits GPUs and multi-core CPUs to achieve high efficiency. Key features of ThunderSVM are as follows.

Support all functionalities of LibSVM such as one-class SVMs, SVC, SVR and probabilistic SVMs.
Use same command line options as LibSVM.
Support Python, R, Matlab and Ruby interfaces.
Supported Operating Systems: Linux, Windows and MacOS.

Why accelerate SVMs: A survey conducted by Kaggle in 2017 shows that 26% of the data mining and machine learning practitioners are users of SVMs.

Documentation | Installation | API Reference (doxygen)

Getting Started

Prerequisites

cmake 2.8 or above
gcc 4.8 or above for Linux and MacOS
Visual C++ for Windows

If you want to use GPUs, you also need to install CUDA.

CUDA 7.5 or above

Quick Install

Download the Python wheel file (For Python3 or above).

For Linux
- pip install thundersvm for CUDA 9.0 - linux_x86_64
- CPU - linux_x86_64
For Windows (64bit)
- CUDA 10.0 - win64
- CPU - win64

Install the Python wheel file.

pip install thundersvm-cu90-0.2.0-py3-none-linux_x86_64.whl

Example

from thundersvm import SVC
clf = SVC()
clf.fit(x, y)

Download

git clone https://github.com/Xtra-Computing/thundersvm.git

Build on Linux (build instructions for MacOS and Windows)

ThunderSVM on GPUs

cd thundersvm
mkdir build && cd build && cmake .. && make -j

If you run into issues that can be traced back to your version of gcc, use cmake with a version flag to force gcc 6. That would look like this:

cmake -DCMAKE_C_COMPILER=gcc-6 -DCMAKE_CXX_COMPILER=g++-6 ..

ThunderSVM on CPUs

# in thundersvm root directory
git submodule init eigen && git submodule update
mkdir build && cd build && cmake -DUSE_CUDA=OFF .. && make -j

If make -j doesn't work, please simply use make. The number of CPU cores to use can be specified by the -o option (e.g., -o 10), and refer to Parameters for more information.

Quick Start

./bin/thundersvm-train -c 100 -g 0.5 ../dataset/test_dataset.txt
./bin/thundersvm-predict ../dataset/test_dataset.txt test_dataset.txt.model test_dataset.predict

You will see Accuracy = 0.98 after successful running.

How to cite ThunderSVM

If you use ThunderSVM in your paper, please cite our work (full version).

@article{wenthundersvm18,
 author = {Wen, Zeyi and Shi, Jiashuai and Li, Qinbin and He, Bingsheng and Chen, Jian},
 title = {{ThunderSVM}: A Fast {SVM} Library on {GPUs} and {CPUs}},
 journal = {Journal of Machine Learning Research},
 volume={19},
 pages={797--801},
 year = {2018}
}

Other publications

Zeyi Wen, Jiashuai Shi, Bingsheng He, Yawen Chen, and Jian Chen. Efficient Multi-Class Probabilistic SVMs on GPUs. IEEE Transactions on Knowledge and Data Engineering (TKDE), 2018.
Zeyi Wen, Bingsheng He, Kotagiri Ramamohanarao, Shengliang Lu, and Jiashuai Shi. Efficient Gradient Boosted Decision Tree Training on GPUs. The 32nd IEEE International Parallel and Distributed Processing Symposium (IPDPS), pages 234-243, 2018.

Related websites

LibSVM | SVM^light | OHD-SVM | NVIDIA Machine Learning | ThunderGBM

Acknowledgement

We acknowledge NVIDIA for their hardware donations.
This project is hosted by NUS, collaborating with Prof. Jian Chen (South China University of Technology). Initial work of this project was done when Zeyi Wen worked at The University of Melbourne.
This work is partially supported by a MoE AcRF Tier 1 grant (T1 251RES1610) in Singapore.
We also thank the authors of LibSVM and OHD-SVM which inspire our algorithmic design.

Selected projects that use ThunderSVM

[1] Scene Graphs for Interpretable Video Anomaly Classification (published in NeurIPS18)

[2] 3D semantic segmentation for high-resolution aerial survey derived point clouds using deep learning. (published in ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, 2018).

[3] Performance Comparison of Machine Learning Models for DDoS Attacks Detection. (published in IEEE International Computer Science and Engineering Conference (ICSEC), 2018).

[4] Kernel machines that adapt to GPUs for effective large batch training. (in arXiv preprint arXiv:1806.06144, 2018).

[5] Sampling Bias in Deep Active Classification: An Empirical Study. (in arXiv preprint arXiv:1909.09389, 2019).

[6] Machine Learning-Based Fast Banknote Serial Number Recognition Using Knowledge Distillation and Bayesian Optimization. (published in Sensors 19.19:4218, 2019).

[7] Classification for Device-free Localization based on Deep Neural Networks. (in Diss. The University of Aizu, 2019).

[8] An accurate and robust approach of device-free localization with convolutional autoencoder. (published in IEEE Internet of Things Journal 6.3:5825-5840, 2019).

[9] Accounting for part pose estimation uncertainties during trajectory generation for part pick-up using mobile manipulators. (published in IEEE International Conference on Robotics and Automation (ICRA), 2019).

[10] Genetic improvement of GPU code. (published in IEEE/ACM International Workshop on Genetic Improvement (GI), 2019). The source code of ThunderSVM is used as a benchmark.

[11] Dynamic Multi-Resolution Data Storage. (published in IEEE/ACM International Symposium on Microarchitecture, 2019). The source code of ThunderSVM is used as a benchmark.

[12] Hyperparameter Estimation in SVM with GPU Acceleration for Prediction of Protein-Protein Interactions. (published in IEEE International Conference on Big Data, 2019).

[13] Texture Selection for Automatic Music Genre Classification. (published in Applied Soft Computing, 2020).

[14] Evolving Switch Architecture toward Accommodating In-Network Intelligence. (published in IEEE Communications Magazine 58.1: 33-39, 2020).

[15] Block-Sparse Coding Based Machine Learning Approach for Dependable Device-Free Localization in IoT Environment. (published in IEEE Internet of Things Journal, 2020).

[16] An adaptive trust boundary protection for IIoT networks using deep-learning feature extraction based semi-supervised model. (published in IEEE Transactions on Industrial Informatics, 2020).

[17] Performance Prediction for Multi-Application Concurrency on GPUs. (published in IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS), 2020).

[18] Tensorsvm: accelerating kernel machines with tensor engine. (published in ACM International Conference on Supercomputing (ICS), 2020).

[19] GEVO: GPU Code Optimization Using Evolutionary Computation. (published in ACM Transactions on Architecture and Code Optimization (TACO), 2020).

[20] CRISPRpred (SEQ): a sequence-based method for sgRNA on target activity prediction using traditional machine learning. (published in BMC bioinformatics, 2020).

[21] Prediction of gas concentration using gated recurrent neural networks. (published in IEEE International Conference on Artificial Intelligence Circuits and Systems (AICAS), 2020).

[22] Design powerful predictor for mRNA subcellular location prediction in Homo sapiens. (published in Briefings in Bioinformatics, 2021).

Comments

SVC' object has no attribute 'n_binary_model'

I got error when i want to use ypred=clf.decision_function(xtest).

2018-07-12 07:40:56 PSTFile "/usr/local/lib/python3.6/site-packages/thundersvm-github_master-py3.6.egg/thundersvmScikit.py", line 290, in decision_function 2018-07-12 07:40:56 PSTdec_func = self._dense_decision_function(X) 2018-07-12 07:40:56 PSTFile "/usr/local/lib/python3.6/site-packages/thundersvm-github_master-py3.6.egg/thundersvmScikit.py", line 301, in _dense_decision_function 2018-07-12 07:40:56 PSTdec_size = X.shape[0] * self.n_binary_model 2018-07-12 07:40:56 PSTAttributeError: 'SVC' object has no attribute 'n_binary_model'

What's wrong?

opened by pardedetalenta 18
Unable to pickle ensemble model that includes thundersvm (SVC)

Hi,

I was trying to pickle an EnsembleVoteClassifier using mlxtend where one of the classfier included is thundersvm. However I am unable to pickle the EnsembleVoteClassifier using pickle.dump() as long as the thundersvm classifier is included, the following error comes out:

PicklingError: Can't pickle <class 'thundersvm.thundersvm.c_float_Array_629'>: attribute lookup c_float_Array_629 on thundersvm.thundersvm failed.

Is there any way that I can save down the ensemble classifier that includes thundersvm?

Thank you
call for contribution

opened by tigertimwu 12
Add support for external Eigen3

This PR is based on #195. It adds support for an external Eigen3 library. If a recent version of Eigen3 is already installed, it will provide a cmake package configuration file. If this exists for at least Eigen version 3.3, it is used instead of the internal Eigen3.

opened by emmenlau 9
Load model missing attribute

I saved the well-trained models, and then load the model again to read its attributes, but those attributes are missing.

I have checked the thundersvmScikit.py, it seems that attributes including: support_vectors_, n_support_, dual_coef_ , coef_, intercept_ are all NOT saved.

e.g from thundersvmScikit import * from sklearn.datasets import *

x,y = load_svmlight_file("../dataset/test_dataset.txt") clf = SVC(verbose=True, gamma=0.5, C=100) clf.fit(x,y) clf.save_to_file('./model')

clf = SVC() clf.load_from_file('./model') clf.n_support_

Traceback (most recent call last): AttributeError: 'SVC' object has no attribute 'n_support'_

P.S the svm(s) in scikit-learn save those parameters, so keeping a consistency would be much appreciated.

opened by rowedenny 9
working set size

Hi , I am trying to understand the way the working_set_size works and its impact on the data transferred to and fro from the GPU ? And I observe that there are two working sets called first_half and last_half ,each of 512 . I would like to understand whats happening as part of the algorithm and whats its effect on the GPU data transfer ? It is equivalent to batch size being operated on ?
question

opened by naveenmiriyalu 9
Segmentation fault(core dumped)? Could you give a example for how to use the source code?

I use the git clone the source code and under the gpu-svm directory make the code. Then I download the iris data from libsvm site, put it under the directory dataset/. Then according to the run.sh, use the command ./run.sh iris. Then it raise a error ./run.sh line 86 # segmentation fault (core dumped) I hope there is a tutorial for how to using the source code.
bug

opened by pranerd 9
Load trained model in C++
Hello,

I've trained some models and would like to test it in my c++ code. How to I load my models and perform classification? Since I don't want to call the binary and load the model each time for classification.

Further, how can I retrieve the weights like LibSVM? I cannot find .sv_coef in the trained model files. LibSVM's example:

(Link to libsvm FAQ: https://www.csie.ntu.edu.tw/~cjlin/libsvm/faq.html) w = model.SVs' * model.sv_coef; b = -model.rho; if model.Label(1) == -1 w = -w; b = -b; end

And, will a thunderSVM's trained model generate a recommended threshold value for predict purpose?

Thank you.
opened by WeiChihChern 8

ThunderSVM GCC 6 or later

Ubuntu 17.10 cuda 9.1 (installed with .deb)

Error occurs with or without -j in make:

-- The C compiler identification is GNU 7.2.0
-- The CXX compiler identification is GNU 7.2.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning (dev) at /usr/share/cmake-3.9/Modules/FindOpenMP.cmake:200 (if):
  Policy CMP0054 is not set: Only interpret if() arguments as variables or
  keywords when unquoted.  Run "cmake --help-policy CMP0054" for policy
  details.  Use the cmake_policy command to set the policy and suppress this
  warning.

  Quoted variables like "c" will no longer be dereferenced when the policy is
  set to NEW.  Since the policy is not set the OLD behavior will be used.
Call Stack (most recent call first):
  /usr/share/cmake-3.9/Modules/FindOpenMP.cmake:324 (_OPENMP_GET_FLAGS)
  CMakeLists.txt:26 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

Compile with CUDA
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /home/devon/Code/thundersvm/build
[  3%] Building NVCC (Device) object src/thundersvm/CMakeFiles/thundersvm.dir/kernel/thundersvm_generated_smo_kernel.cu.o
In file included from /usr/local/cuda/include/host_config.h:50:0,
                 from /usr/local/cuda/include/cuda_runtime.h:78,
                 from <command-line>:0:
/usr/local/cuda/include/crt/host_config.h:121:2: error: #error -- unsupported GNU version! gcc versions later than 6 are not supported!
 #error -- unsupported GNU version! gcc versions later than 6 are not supported!
  ^~~~~
CMake Error at thundersvm_generated_smo_kernel.cu.o.Release.cmake:222 (message):
  Error generating
  /home/devon/Code/thundersvm/build/src/thundersvm/CMakeFiles/thundersvm.dir/kernel/./thundersvm_generated_smo_kernel.cu.o


src/thundersvm/CMakeFiles/thundersvm.dir/build.make:70: recipe for target 'src/thundersvm/CMakeFiles/thundersvm.dir/kernel/thundersvm_generated_smo_kernel.cu.o' failed
make[2]: *** [src/thundersvm/CMakeFiles/thundersvm.dir/kernel/thundersvm_generated_smo_kernel.cu.o] Error 1
CMakeFiles/Makefile2:126: recipe for target 'src/thundersvm/CMakeFiles/thundersvm.dir/all' failed
make[1]: *** [src/thundersvm/CMakeFiles/thundersvm.dir/all] Error 2
Makefile:83: recipe for target 'all' failed
make: *** [all] Error 2

opened by rdevon 8

Taking too long to train a relatively small model

I'm trying to train a 156d model with 36k examples. Sklearn does it in 180s. However, thundersvm is already running it for 90 hours.

Here is my system:

GTX 780, 4GB log: logfile

nvcc --version Built on Tue_Jan_10_13:22:03_CST_2017 Cuda compilation tools, release 8.0, V8.0.61

gcc --version gcc (Ubuntu 4.9.3-13ubuntu2) 4.9.3

I'm not sure what to try next.

Thanks!

opened by julianofoleiss 8
Unable to build on MacOS 10.12.6

Hello, I would like to use ThunderSVM! However, I'm unable to build under Mac OS 10.12.6 with Xcode 9.2. The OpenMP configuration fails as below.

The contents of CMakeError.log (also below) suggest it is due to Apple Clang not supporting OpenMP. I see in the git log that you support MacOS....How do you work around this OpenMP issue? Thanks! -Ramy

========================================================================

❯ mkdir build && cd build && cmake .. && make -j -- The C compiler identification is AppleClang 9.0.0.9000039 -- The CXX compiler identification is AppleClang 9.0.0.9000039 -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Try OpenMP C flag = [-fopenmp=libomp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [ ] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [/openmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-Qopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-openmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-xopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [+Oopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-qsmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP C flag = [-mp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-fopenmp=libomp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [ ] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [/openmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-Qopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-openmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-xopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [+Oopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-qsmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed -- Try OpenMP CXX flag = [-mp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Failed CMake Error at /usr/local/Cellar/cmake/3.8.2/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:137 (message): Could NOT find OpenMP (missing: OpenMP_C_FLAGS OpenMP_CXX_FLAGS) Call Stack (most recent call first): /usr/local/Cellar/cmake/3.8.2/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:377 (_FPHSA_FAILURE_MESSAGE) /usr/local/Cellar/cmake/3.8.2/share/cmake/Modules/FindOpenMP.cmake:316 (find_package_handle_standard_args) CMakeLists.txt:16 (find_package)

======================================================================== Contents of Error log below

========================================================================

Run Build Command:"/usr/bin/make" "cmTC_6c95c/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_6c95c.dir/build.make CMakeFiles/cmTC_6c95c.dir/build Building C object CMakeFiles/cmTC_6c95c.dir/src.c.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -DOpenMP_FLAG_DETECTED -fopenmp=libomp -o CMakeFiles/cmTC_6c95c.dir/src.c.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c clang: error: unsupported argument 'libomp' to option 'fopenmp=' make[1]: *** [CMakeFiles/cmTC_6c95c.dir/src.c.o] Error 1 make: *** [cmTC_6c95c/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_3c8dd/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_3c8dd.dir/build.make CMakeFiles/cmTC_3c8dd.dir/build Building C object CMakeFiles/cmTC_3c8dd.dir/src.c.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -DOpenMP_FLAG_DETECTED -o CMakeFiles/cmTC_3c8dd.dir/src.c.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c:2:10: fatal error: 'omp.h' file not found #include <omp.h> ^~~~~~~ 1 error generated. make[1]: *** [CMakeFiles/cmTC_3c8dd.dir/src.c.o] Error 1 make: *** [cmTC_3c8dd/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_9977f/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_9977f.dir/build.make CMakeFiles/cmTC_9977f.dir/build Building C object CMakeFiles/cmTC_9977f.dir/src.c.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -DOpenMP_FLAG_DETECTED -fopenmp -o CMakeFiles/cmTC_9977f.dir/src.c.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c clang: error: unsupported option '-fopenmp' make[1]: *** [CMakeFiles/cmTC_9977f.dir/src.c.o] Error 1 make: *** [cmTC_9977f/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_8402c/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_8402c.dir/build.make CMakeFiles/cmTC_8402c.dir/build Building C object CMakeFiles/cmTC_8402c.dir/src.c.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -DOpenMP_FLAG_DETECTED /openmp -o CMakeFiles/cmTC_8402c.dir/src.c.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c clang: error: no such file or directory: '/openmp' make[1]: *** [CMakeFiles/cmTC_8402c.dir/src.c.o] Error 1 make: *** [cmTC_8402c/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_02058/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_02058.dir/build.make CMakeFiles/cmTC_02058.dir/build Building C object CMakeFiles/cmTC_02058.dir/src.c.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -DOpenMP_FLAG_DETECTED -Qopenmp -o CMakeFiles/cmTC_02058.dir/src.c.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c clang: error: unknown argument: '-Qopenmp' make[1]: *** [CMakeFiles/cmTC_02058.dir/src.c.o] Error 1 make: *** [cmTC_02058/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_42a97/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_42a97.dir/build.make CMakeFiles/cmTC_42a97.dir/build Building C object CMakeFiles/cmTC_42a97.dir/src.c.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -DOpenMP_FLAG_DETECTED -openmp -o CMakeFiles/cmTC_42a97.dir/src.c.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c:2:10: fatal error: 'omp.h' file not found #include <omp.h> ^~~~~~~ 1 error generated. make[1]: *** [CMakeFiles/cmTC_42a97.dir/src.c.o] Error 1 make: *** [cmTC_42a97/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_40796/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_40796.dir/build.make CMakeFiles/cmTC_40796.dir/build Building C object CMakeFiles/cmTC_40796.dir/src.c.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -DOpenMP_FLAG_DETECTED -xopenmp -o CMakeFiles/cmTC_40796.dir/src.c.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c clang: error: language not recognized: 'openmp' clang: warning: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c: 'linker' input unused [-Wunused-command-line-argument] make[1]: *** [CMakeFiles/cmTC_40796.dir/src.c.o] Error 1 make: *** [cmTC_40796/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_0f4a9/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_0f4a9.dir/build.make CMakeFiles/cmTC_0f4a9.dir/build Building C object CMakeFiles/cmTC_0f4a9.dir/src.c.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -DOpenMP_FLAG_DETECTED +Oopenmp -o CMakeFiles/cmTC_0f4a9.dir/src.c.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c clang: error: no such file or directory: '+Oopenmp' make[1]: *** [CMakeFiles/cmTC_0f4a9.dir/src.c.o] Error 1 make: *** [cmTC_0f4a9/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_1cdb0/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_1cdb0.dir/build.make CMakeFiles/cmTC_1cdb0.dir/build Building C object CMakeFiles/cmTC_1cdb0.dir/src.c.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -DOpenMP_FLAG_DETECTED -qsmp -o CMakeFiles/cmTC_1cdb0.dir/src.c.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c clang: error: unknown argument: '-qsmp' make[1]: *** [CMakeFiles/cmTC_1cdb0.dir/src.c.o] Error 1 make: *** [cmTC_1cdb0/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_973e0/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_973e0.dir/build.make CMakeFiles/cmTC_973e0.dir/build Building C object CMakeFiles/cmTC_973e0.dir/src.c.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -DOpenMP_FLAG_DETECTED -mp -o CMakeFiles/cmTC_973e0.dir/src.c.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.c clang: error: unknown argument: '-mp' make[1]: *** [CMakeFiles/cmTC_973e0.dir/src.c.o] Error 1 make: *** [cmTC_973e0/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C++ SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_a9fef/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_a9fef.dir/build.make CMakeFiles/cmTC_a9fef.dir/build Building CXX object CMakeFiles/cmTC_a9fef.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DOpenMP_FLAG_DETECTED -fopenmp=libomp -o CMakeFiles/cmTC_a9fef.dir/src.cxx.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx clang: error: unsupported argument 'libomp' to option 'fopenmp=' make[1]: *** [CMakeFiles/cmTC_a9fef.dir/src.cxx.o] Error 1 make: *** [cmTC_a9fef/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C++ SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_8ca43/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_8ca43.dir/build.make CMakeFiles/cmTC_8ca43.dir/build Building CXX object CMakeFiles/cmTC_8ca43.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DOpenMP_FLAG_DETECTED -o CMakeFiles/cmTC_8ca43.dir/src.cxx.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx:2:10: fatal error: 'omp.h' file not found #include <omp.h> ^~~~~~~ 1 error generated. make[1]: *** [CMakeFiles/cmTC_8ca43.dir/src.cxx.o] Error 1 make: *** [cmTC_8ca43/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C++ SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_4b958/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_4b958.dir/build.make CMakeFiles/cmTC_4b958.dir/build Building CXX object CMakeFiles/cmTC_4b958.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DOpenMP_FLAG_DETECTED -fopenmp -o CMakeFiles/cmTC_4b958.dir/src.cxx.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx clang: error: unsupported option '-fopenmp' make[1]: *** [CMakeFiles/cmTC_4b958.dir/src.cxx.o] Error 1 make: *** [cmTC_4b958/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C++ SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_f1381/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_f1381.dir/build.make CMakeFiles/cmTC_f1381.dir/build Building CXX object CMakeFiles/cmTC_f1381.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DOpenMP_FLAG_DETECTED /openmp -o CMakeFiles/cmTC_f1381.dir/src.cxx.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx clang: error: no such file or directory: '/openmp' make[1]: *** [CMakeFiles/cmTC_f1381.dir/src.cxx.o] Error 1 make: *** [cmTC_f1381/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C++ SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_f1059/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_f1059.dir/build.make CMakeFiles/cmTC_f1059.dir/build Building CXX object CMakeFiles/cmTC_f1059.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DOpenMP_FLAG_DETECTED -Qopenmp -o CMakeFiles/cmTC_f1059.dir/src.cxx.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx clang: error: unknown argument: '-Qopenmp' make[1]: *** [CMakeFiles/cmTC_f1059.dir/src.cxx.o] Error 1 make: *** [cmTC_f1059/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C++ SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_797d3/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_797d3.dir/build.make CMakeFiles/cmTC_797d3.dir/build Building CXX object CMakeFiles/cmTC_797d3.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DOpenMP_FLAG_DETECTED -openmp -o CMakeFiles/cmTC_797d3.dir/src.cxx.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx:2:10: fatal error: 'omp.h' file not found #include <omp.h> ^~~~~~~ 1 error generated. make[1]: *** [CMakeFiles/cmTC_797d3.dir/src.cxx.o] Error 1 make: *** [cmTC_797d3/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C++ SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_eeec0/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_eeec0.dir/build.make CMakeFiles/cmTC_eeec0.dir/build Building CXX object CMakeFiles/cmTC_eeec0.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DOpenMP_FLAG_DETECTED -xopenmp -o CMakeFiles/cmTC_eeec0.dir/src.cxx.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx clang: error: language not recognized: 'openmp' clang: warning: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx: 'linker' input unused [-Wunused-command-line-argument] make[1]: *** [CMakeFiles/cmTC_eeec0.dir/src.cxx.o] Error 1 make: *** [cmTC_eeec0/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C++ SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_1b278/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_1b278.dir/build.make CMakeFiles/cmTC_1b278.dir/build Building CXX object CMakeFiles/cmTC_1b278.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DOpenMP_FLAG_DETECTED +Oopenmp -o CMakeFiles/cmTC_1b278.dir/src.cxx.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx clang: error: no such file or directory: '+Oopenmp' make[1]: *** [CMakeFiles/cmTC_1b278.dir/src.cxx.o] Error 1 make: *** [cmTC_1b278/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C++ SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_e6b58/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_e6b58.dir/build.make CMakeFiles/cmTC_e6b58.dir/build Building CXX object CMakeFiles/cmTC_e6b58.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DOpenMP_FLAG_DETECTED -qsmp -o CMakeFiles/cmTC_e6b58.dir/src.cxx.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx clang: error: unknown argument: '-qsmp' make[1]: *** [CMakeFiles/cmTC_e6b58.dir/src.cxx.o] Error 1 make: *** [cmTC_e6b58/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

Performing C++ SOURCE FILE Test OpenMP_FLAG_DETECTED failed with the following output: Change Dir: /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_f04ef/fast" /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_f04ef.dir/build.make CMakeFiles/cmTC_f04ef.dir/build Building CXX object CMakeFiles/cmTC_f04ef.dir/src.cxx.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -DOpenMP_FLAG_DETECTED -mp -o CMakeFiles/cmTC_f04ef.dir/src.cxx.o -c /Users/sadekrs1/work/virga/training/thundersvm/build/CMakeFiles/CMakeTmp/src.cxx clang: error: unknown argument: '-mp' make[1]: *** [CMakeFiles/cmTC_f04ef.dir/src.cxx.o] Error 1 make: *** [cmTC_f04ef/fast] Error 2

Source file was:

#include <omp.h> int main() { #ifdef _OPENMP return 0; #else breaks_on_purpose #endif }

opened by rsadek 8

error: identifier "cusparseSpMatDescr_t" is undefined

Dear authors of thundersvm, I have build errors during make, details are as follows. Could you help me out? Thank you!

-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Found OpenMP_C: -fopenmp (found version "3.1") 
-- Found OpenMP_CXX: -fopenmp (found version "3.1") 
-- Found OpenMP: TRUE (found version "3.1")  
Compile with CUDA
-- Configuring done
-- Generating done
-- Build files have been written to: /home/yuanhang/Projects/thundersvm/build

[  3%] Building NVCC (Device) object src/thundersvm/CMakeFiles/thundersvm.dir/kernel/thundersvm_generated_smo_kernel.cu.o
[  7%] Building NVCC (Device) object src/thundersvm/CMakeFiles/thundersvm.dir/kernel/thundersvm_generated_kernelmatrix_kernel.cu.o
/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(142): error: identifier "cusparseSpMatDescr_t" is undefined

/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(148): error: identifier "CUSPARSE_INDEX_32I" is undefined

/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(146): error: identifier "cusparseCreateCsr" is undefined

/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(151): error: identifier "cusparseDnMatDescr_t" is undefined

/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(155): error: identifier "CUSPARSE_ORDER_COL" is undefined

/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(154): error: identifier "cusparseCreateDnMat" is undefined

/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(157): error: identifier "cusparseDnMatDescr_t" is undefined

/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(164): error: identifier "CUSPARSE_MM_ALG_DEFAULT" is undefined

/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(163): error: identifier "cusparseSpMM_bufferSize" is undefined

/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(171): error: identifier "cusparseSpMM" is undefined

/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(177): error: identifier "cusparseDestroySpMat" is undefined

/home/yuanhang/Projects/thundersvm/src/thundersvm/kernel/kernelmatrix_kernel.cu(179): error: identifier "cusparseDestroyDnMat" is undefined

12 errors detected in the compilation of "/tmp/tmpxft_0000c6b8_00000000-6_kernelmatrix_kernel.cpp1.ii".
CMake Error at thundersvm_generated_kernelmatrix_kernel.cu.o.Release.cmake:279 (message):
  Error generating file
  /home/yuanhang/Projects/thundersvm/build/src/thundersvm/CMakeFiles/thundersvm.dir/kernel/./thundersvm_generated_kernelmatrix_kernel.cu.o


make[2]: *** [src/thundersvm/CMakeFiles/thundersvm.dir/kernel/thundersvm_generated_kernelmatrix_kernel.cu.o] Error 1
make[1]: *** [src/thundersvm/CMakeFiles/thundersvm.dir/all] Error 2
make: *** [all] Error 2

opened by ryh95 7

failed on 1st step: cudaErrorInvalidDevice: invalid device ordinal

Hi, I'm having some trouble. I'm running deep learning experiments and I want to use thundersvm instead of traditional svm to accelerate the experiments, but the following error occurs while using it. My graphics card is an RTX3090 with 24GB. The dataset itself is not very large, X is only [188,40]. I'm not sure where the problem is, can you please help answer it?

opened by sktsherlock 0
trouble installing

i am trying to install thundersvm using pip in linux system with cuda 10.2, it gives me this error while trying to use. /lib/python3.7/site-packages/thundersvm/libthundersvm.so: cannot open shared object file: No such file or directory

however, i do have that file in that location, can you please help me with this? __init__.py libthundersvm.so __pycache__ thundersvm.py

thanks!

opened by pritamqu 0
Add support to include ThunderSVM from another cmake project
Hi,

I wanted to use ThunderSVM as part of a different cmake project. This currently fails, as current master relies on

CMAKE_BINARY_DIR

PROJECT_SOURCE_DIR

CMAKE_BINARY_DIR

I changed the usage of these variables to use the CURRENT versions with relative paths from there. With this changes, everything works as expected.
opened by sbreuss 0
pip install thundersvm fail

I'm trying to use thundersvm python version in Xavier.

Building with C++ was successful, but

pip install thundersvm

is not available.

Can't use thundersvm(python) in Xavier?

opened by jsun94 0
fail to build thundersvm(GPU)

Determining if the pthread_create exist failed with the following output: Change Dir: /home/user-njf/bjy/V5_winter_wheat_extract/thundersvm-master/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_0f534/fast" /usr/bin/make -f CMakeFiles/cmTC_0f534.dir/build.make CMakeFiles/cmTC_0f534.dir/build make[1]: Entering directory '/home/user-njf/bjy/V5_winter_wheat_extract/thundersvm-master/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_0f534.dir/CheckSymbolExists.c.o /usr/bin/cc -o CMakeFiles/cmTC_0f534.dir/CheckSymbolExists.c.o -c /home/user-njf/bjy/V5_winter_wheat_extract/thundersvm-master/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c Linking C executable cmTC_0f534 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_0f534.dir/link.txt --verbose=1 /usr/bin/cc CMakeFiles/cmTC_0f534.dir/CheckSymbolExists.c.o -o cmTC_0f534 CMakeFiles/cmTC_0f534.dir/CheckSymbolExists.c.o: In function main': CheckSymbolExists.c:(.text+0x16): undefined reference topthread_create' collect2: error: ld returned 1 exit status CMakeFiles/cmTC_0f534.dir/build.make:97: recipe for target 'cmTC_0f534' failed make[1]: *** [cmTC_0f534] Error 1 make[1]: Leaving directory '/home/user-njf/bjy/V5_winter_wheat_extract/thundersvm-master/build/CMakeFiles/CMakeTmp' Makefile:126: recipe for target 'cmTC_0f534/fast' failed make: *** [cmTC_0f534/fast] Error 2

File /home/user-njf/bjy/V5_winter_wheat_extract/thundersvm-master/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: /* */ #include <pthread.h>

int main(int argc, char** argv) { (void)argv; #ifndef pthread_create return ((int*)(&pthread_create))[argc]; #else (void)argc; return 0; #endif }

Determining if the function pthread_create exists in the pthreads failed with the following output: Change Dir: /home/user-njf/bjy/V5_winter_wheat_extract/thundersvm-master/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/make" "cmTC_3385b/fast" /usr/bin/make -f CMakeFiles/cmTC_3385b.dir/build.make CMakeFiles/cmTC_3385b.dir/build make[1]: Entering directory '/home/user-njf/bjy/V5_winter_wheat_extract/thundersvm-master/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_3385b.dir/CheckFunctionExists.c.o /usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/cmTC_3385b.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.5/Modules/CheckFunctionExists.c Linking C executable cmTC_3385b /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_3385b.dir/link.txt --verbose=1 /usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/cmTC_3385b.dir/CheckFunctionExists.c.o -o cmTC_3385b -lpthreads /usr/bin/ld: cannot find -lpthreads collect2: error: ld returned 1 exit status CMakeFiles/cmTC_3385b.dir/build.make:97: recipe for target 'cmTC_3385b' failed make[1]: *** [cmTC_3385b] Error 1 make[1]: Leaving directory '/home/user-njf/bjy/V5_winter_wheat_extract/thundersvm-master/build/CMakeFiles/CMakeTmp' Makefile:126: recipe for target 'cmTC_3385b/fast' failed make: *** [cmTC_3385b/fast] Error 2

opened by whiteabcdef 0

Releases(v0.3.4)

v0.3.4(Nov 17, 2019)

Source code(tar.gz)
Source code(zip)
thundersvm_cpu-0.3.4-cp36-cp36m-linux_x86_64.whl(234.47 KB)
thundersvm_cpu-0.3.4-cp36-cp36m-win_amd64.whl(539.57 KB)
thundersvm_cuda10.1-0.3.4-cp36-cp36m-linux_x86_64.whl(502.67 KB)
thundersvm_cuda10.1-0.3.4-cp36-cp36m-win_amd64.whl(731.69 KB)
thundersvm_cuda8.0-0.3.4-cp36-cp36m-linux_x86_64.whl(442.32 KB)
thundersvm_cuda9.2-0.3.4-cp36-cp36m-linux_x86_64.whl(491.34 KB)
0.3.3(May 14, 2019)

Fix

#148 load from file
Source code(tar.gz)
Source code(zip)
0.3.2(May 7, 2019)

The latest release version so far. Will add comments on the future release version.
Source code(tar.gz)
Source code(zip)
thundersvm-0.3.2-py3-none-any.whl(489.19 KB)
v0.2(Dec 14, 2017)

Source code(tar.gz)
Source code(zip)
v0.1(Nov 8, 2016)

In this version, SVM cross-validation and SVM training module are sound. Multi-class SVM and SVM with probability output is under development.
Source code(tar.gz)
Source code(zip)

ThunderSVM: A Fast SVM Library on GPUs and CPUs

Related tags

Overview

What's new

Overview

Contents

Getting Started

Prerequisites

Quick Install

Example

Download

Build on Linux (build instructions for MacOS and Windows)

ThunderSVM on GPUs

ThunderSVM on CPUs

Quick Start

How to cite ThunderSVM

Other publications

Related websites

Acknowledgement

Selected projects that use ThunderSVM

Comments

Releases(v0.3.4)

v0.3.4(Nov 17, 2019)

0.3.3(May 14, 2019)

Fix

0.3.2(May 7, 2019)

v0.2(Dec 14, 2017)

v0.1(Nov 8, 2016)

Owner

Xtra Computing Group

ThunderGBM: Fast GBDTs and Random Forests on GPUs

A fast, scalable, high performance Gradient Boosting on Decision Trees library, used for ranking, classification, regression and other machine learning tasks for Python, R, Java, C++. Supports computation on CPU and GPU.

﻿Greykite: A flexible, intuitive and fast forecasting library

Simple, fast, and parallelized symbolic regression in Python/Julia via regularized evolution and simulated annealing

An open source framework that provides a simple, universal API for building distributed applications. Ray is packaged with RLlib, a scalable reinforcement learning library, and Tune, a scalable hyperparameter tuning library.

A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.

Meerkat provides fast and flexible data structures for working with complex machine learning datasets.

A basic Ray Tracer that exploits numpy arrays and functions to work fast.

High performance implementation of Extreme Learning Machines (fast randomized neural networks).

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow

Petastorm library enables single machine or distributed training and evaluation of deep learning models from datasets in Apache Parquet format. It supports ML frameworks such as Tensorflow, Pytorch, and PySpark and can be used from pure Python code.

A library of extension and helper modules for Python's data analysis and machine learning libraries.

Little Ball of Fur - A graph sampling extension library for NetworKit and NetworkX (CIKM 2020)

Anomaly Detection and Correlation library

Home repository for the Regularized Greedy Forest (RGF) library. It includes original implementation from the paper and multithreaded one written in C++, along with various language-specific wrappers.

A python library for easy manipulation and forecasting of time series.

STUMPY is a powerful and scalable Python library for computing a Matrix Profile, which can be used for a variety of time series data mining tasks

A Python library for detecting patterns and anomalies in massive datasets using the Matrix Profile

DeepSpeed is a deep learning optimization library that makes distributed training easy, efficient, and effective.

Greykite: A flexible, intuitive and fast forecasting library