WORD: Revisiting Organs Segmentation in the Whole Abdominal Region

Related tags

Deep Learning medical-image-segmentation abdominal-organ-dataset annotation-efficient-learning
Overview

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region.

  • This repository provides the codebase and dataset for our work WORD: Revisiting Organs Segmentation in the Whole Abdominal Region.
  • Now, we are preparing an online evaluation server for the fair and open research if you have experience with it or want to join or provide some support to this project, please contact us !!!
  • Some information about the WORD dataset is presented in the following:
Fig. 1. An example in the WORD dataset.
Fig. 2. Volume distribution or each organ in the WORD dataset.
Fig. 3. User study based on three junior oncologists independently, each of them comes from a different hospital.

Dataset

The WORD dataset will be released once the work is accepted (150 volumes with 16 carefully annotated organs), moreover, the dataset will be extended to larger and more diverse (more patients, more organs, and more modalities, more clinical hospitals' data and MR Images will be considered to include future). Any questions, please contact Xiangde.

Acknowledgment and Statement

  • This project has been approved by the privacy and ethical review committee. We thank all collaborators for the data collection, annotation, checking, and user study!

  • This project and dataset were designed for open-available academic research, not for clinical, commercial, second-development, or other use. In addition, if you used it for your academic research, you are encouraged to release th code and the pre-trained model.

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Comments
  • share trained networks

    share trained networks

    Hi I'm really in need of a neural network which has been trained on your dataset, but as result of lack of appropriate hardware resource its impossible for me to do it. Is it possible for you to share few models that you have trained in your paper?

    opened by saleknia 3
  • share pre-trained 2D network

    share pre-trained 2D network

    Hi In the another issue I asked for pre-trained networks, that you generously shared pre-trained nnUNet3DV2 model with me. Is it possible for you to also share a 2D pre-trained model?

    opened by saleknia 1
Owner
Healthcare Intelligence Laboratory
Healthcare Intelligence Laboratory
GitHub https://arxiv.org/pdf/2111.02403.pdf
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