A set of utility functions for working with GeoJSON annotations in Kaibu

Overview

kaibu-utils

A set of utility functions for working with Kaibu.

Create a new repository

  • Create a new repository and select imjoy-team/imjoy-python-template as template repository.
  • Clone your new repository.
  • Search and replace all occurrences of kaibu-utils. Replace kaibu-utils with the name of the new repository.
  • Add package requirements in install_requires in setup.py and in requirements.txt as needed.
  • Update this README.md with a description and instructions for your new repository.

Development

  • Install and set up development environment.

    pip install -r requirements_dev.txt

    This will install all requirements. It will also install this package in development mode, so that code changes are applied immediately without reinstall necessary.

  • Here's a list of development tools we use.

  • It's recommended to use the corresponding code formatter and linters also in your code editor to get instant feedback. A popular editor that can do this is vscode.

  • Run all tests, check formatting and linting.

    tox
  • Run a single tox environment.

    tox -e lint
  • Reinstall all tox environments.

    tox -r
  • Run pytest and all tests.

    pytest
  • Run pytest and calculate coverage for the package.

    pytest --cov-report term-missing --cov=kaibu-utils
  • Continuous integration is by default supported via GitHub actions. GitHub actions is free for public repositories and comes with 2000 free Ubuntu build minutes per month for private repositories.

Comments
  • Bump tox from 3.24.4 to 4.0.16

    Bump tox from 3.24.4 to 4.0.16

    Bumps tox from 3.24.4 to 4.0.16.

    Release notes

    Sourced from tox's releases.

    4.0.16

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.15...4.0.16

    4.0.15

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.14...4.0.15

    4.0.14

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.13...4.0.14

    4.0.13

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.12...4.0.13

    4.0.12

    What's Changed

    New Contributors

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.11...4.0.12

    4.0.11

    What's Changed

    ... (truncated)

    Changelog

    Sourced from tox's changelog.

    v4.0.16 (2022-12-20)

    Bugfixes - 4.0.16

    - Fix :ref:`change_dir` is relative to current working directory rather than to the :ref:`tox_root` when using the ``-c``
      argument to locate the ``tox.ini`` file - by :user:`gaborbernat`. (:issue:`2619`)
    

    v4.0.15 (2022-12-19)

    Bugfixes - 4.0.15

    • Fix tox auto-provisioning not working and relax :ref:min_version default from 4.0 to no version constraint
      • by user:gaborbernat. (:issue:2634)
    • Fix assertion in test_result_json_sequential when interpreter _base_executable is a hardlink (macOS homebrew)
      • by user:masenf. (:issue:2720)
    • Complex negative factor filters not working - by user:gaborbernat. (:issue:2747)

    v4.0.14 (2022-12-18)

    Bugfixes - 4.0.14

    - Do not include non test environment sections or factor filters in INI configuration to factor discovery - by
      :user:`gaborbernat`. (:issue:`2746`)
    

    v4.0.13 (2022-12-17)

    Bugfixes - 4.0.13

    • A plain section in INI configuration matching a tox environment name shadowed the laters configuration - by :user:gaborbernat. (:issue:2636)
    • Fix space not accepted in factor filter expression - by :user:gaborbernat. (:issue:2718)

    v4.0.12 (2022-12-16)

    Bugfixes - 4.0.12

    - If tox is running in a tty, allocate a pty (pseudo terminal) for commands
      and copy termios attributes to show colors and improve interactive use - by :user:`masenf`. (:issue:`1773`)
    - Fix python hash seed not being set - by :user:`gaborbernat`. (:issue:`2645`)
    - Fix legacy CLI flags ``--pre``, ``--force-deps``, ``--sitepackages`` and ``--alwayscopy`` not working, and mark them
      as deprecated - by :user:`gaborbernat`. (:issue:`2690`)
    </tr></table> 
    

    ... (truncated)

    Commits

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    dependencies python 
    opened by dependabot[bot] 1
  • Bump tox from 3.24.4 to 4.0.14

    Bump tox from 3.24.4 to 4.0.14

    Bumps tox from 3.24.4 to 4.0.14.

    Release notes

    Sourced from tox's releases.

    4.0.14

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.13...4.0.14

    4.0.13

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.12...4.0.13

    4.0.12

    What's Changed

    New Contributors

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.11...4.0.12

    4.0.11

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.10...4.0.11

    4.0.9

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.8...4.0.9

    4.0.8

    What's Changed

    ... (truncated)

    Changelog

    Sourced from tox's changelog.

    v4.0.14 (2022-12-18)

    Bugfixes - 4.0.14

    - Do not include non test environment sections or factor filters in INI configuration to factor discovery - by
      :user:`gaborbernat`. (:issue:`2746`)
    

    v4.0.13 (2022-12-17)

    Bugfixes - 4.0.13

    • A plain section in INI configuration matching a tox environment name shadowed the laters configuration - by :user:gaborbernat. (:issue:2636)
    • Fix space not accepted in factor filter expression - by :user:gaborbernat. (:issue:2718)

    v4.0.12 (2022-12-16)

    Bugfixes - 4.0.12

    - If tox is running in a tty, allocate a pty (pseudo terminal) for commands
      and copy termios attributes to show colors and improve interactive use - by :user:`masenf`. (:issue:`1773`)
    - Fix python hash seed not being set - by :user:`gaborbernat`. (:issue:`2645`)
    - Fix legacy CLI flags ``--pre``, ``--force-deps``, ``--sitepackages`` and ``--alwayscopy`` not working, and mark them
      as deprecated - by :user:`gaborbernat`. (:issue:`2690`)
    

    Improved Documentation - 4.0.12

    • Document user level config. (:issue:2633)

    v4.0.11 (2022-12-14)

    Features - 4.0.11

    - Modified handling of ``NO_COLOR`` environment variable, consistent with
      `de facto conventions <https://no-color.org>`_: any non-empty string will enable ``NO_COLOR`` (disable colorized
      output); no ``NO_COLOR`` variable or ``NO_COLOR`` with an empty string will disable ``NO_COLOR`` (enable colorized
      output) - by :user:`ptmcg`. (:issue:`2719`)
    

    Bugfixes - 4.0.11

    • TOX_SKIP_ENV environment variable now works again, and can also be set via the CLI argument --skip-env for any command where -e can be set - by :user:mgedmin. (:issue:2698)
    • tox config should only show :ref:env_list arguments by default instead of ALL - by :user:gaborbernat. (:issue:2726)

    ... (truncated)

    Commits

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    dependencies python 
    opened by dependabot[bot] 1
  • Bump tox from 3.24.4 to 4.0.8

    Bump tox from 3.24.4 to 4.0.8

    Bumps tox from 3.24.4 to 4.0.8.

    Release notes

    Sourced from tox's releases.

    4.0.8

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.7...4.0.8

    4.0.7

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.6...4.0.7

    4.0.6

    What's Changed

    New Contributors

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.5...4.0.6

    4.0.5

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.4...4.0.5

    4.0.4

    What's Changed

    New Contributors

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.3...4.0.4

    4.0.3

    What's Changed

    ... (truncated)

    Changelog

    Sourced from tox's changelog.

    v4.0.8 (2022-12-11)

    Bugfixes - 4.0.8

    - Fix multiple substitution on factor filtering in ``tox.ini`` when multiple factor filters match
      - by :user:`gaborbernat`. (:issue:`2650`)
    - Fix regression in ``requirements.txt`` parsing - by :user:`gaborbernat`. (:issue:`2682`)
    

    v4.0.7 (2022-12-11)

    Bugfixes - 4.0.7

    • Support for --no-deps flag within the :ref:deps - by :user:gaborbernat. (:issue:2674)

    v4.0.6 (2022-12-10)

    Features - 4.0.6

    - Fail on :ref:`pass_env`/:ref:`passenv` entries containing whitespace - by :user:`ericzolf`. (:issue:`2658`)
    

    v4.0.5 (2022-12-09)

    Bugfixes - 4.0.5

    • Normalize extra names passed in (fixes extra groups not being picked up during installation) - by :user:gaborbernat. (:issue:2655)

    v4.0.4 (2022-12-09)

    Bugfixes - 4.0.4

    - Disable logging from ``distlib.util`` and ``filelock`` as these log messages are too verbose - by :user:`gaborbernat`. (:issue:`2655`)
    - Use ``!r`` and ``repr()`` to better display erroneous values in exception from ``StrConverter.to_bool()`` - by :user:`ptmcg`. (:issue:`2665`)
    

    Improved Documentation - 4.0.4

    • Document that running --showconfig or --help-ini with the -v flag will add interleaved debugging information, whereas tox v3 added extra lines at the start - by :user:jugmac00. (:issue:2622)
    • Document that tox v4 errors when using -U when defining dependencies via deps - by :user:jugmac00. (:issue:2631)

    v4.0.3 (2022-12-08)

    ... (truncated)

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    dependencies python 
    opened by dependabot[bot] 1
  • Bump pylint from 2.12.2 to 2.15.8

    Bump pylint from 2.12.2 to 2.15.8

    Bumps pylint from 2.12.2 to 2.15.8.

    Commits
    • 1f84ed9 Bump pylint to 2.15.8, update changelog (#7899)
    • 6178e41 Define Protocol as abstract to prevent abstract-method FP (#7839) (#7879)
    • 438025d add test and expl for line-too-long useless-supp FP (#7887)
    • 19c0534 Fix missing-param-doc for escaped underscores (#7878)
    • e1856b2 [github actions] Reinstate tests and check on maintenance branch
    • 5fb17e0 multiple-statements no longer triggers for function stubs using inlined `...
    • 5a96370 Bump pylint to 2.15.7, update changelog (#7845)
    • 43109b6 Revert "Fix crash when using enumerate with start and a class attribu...
    • ff73282 Fix logging-fstring-interpolation false positive (#7846) (#7854)
    • 86b8c64 Fix crash when using enumerate with start and a class attribute (#7824)
    • Additional commits viewable in compare view

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    dependencies python 
    opened by dependabot[bot] 1
  • Bump black from 21.12b0 to 22.12.0

    Bump black from 21.12b0 to 22.12.0

    Bumps black from 21.12b0 to 22.12.0.

    Release notes

    Sourced from black's releases.

    22.12.0

    Preview style

    • Enforce empty lines before classes and functions with sticky leading comments (#3302)
    • Reformat empty and whitespace-only files as either an empty file (if no newline is present) or as a single newline character (if a newline is present) (#3348)
    • Implicitly concatenated strings used as function args are now wrapped inside parentheses (#3307)
    • Correctly handle trailing commas that are inside a line's leading non-nested parens (#3370)

    Configuration

    • Fix incorrectly applied .gitignore rules by considering the .gitignore location and the relative path to the target file (#3338)
    • Fix incorrectly ignoring .gitignore presence when more than one source directory is specified (#3336)

    Parser

    • Parsing support has been added for walruses inside generator expression that are passed as function args (for example, any(match := my_re.match(text) for text in texts)) (#3327).

    Integrations

    • Vim plugin: Optionally allow using the system installation of Black via let g:black_use_virtualenv = 0(#3309)

    22.10.0

    Highlights

    • Runtime support for Python 3.6 has been removed. Formatting 3.6 code will still be supported until further notice.

    Stable style

    • Fix a crash when # fmt: on is used on a different block level than # fmt: off (#3281)

    Preview style

    ... (truncated)

    Changelog

    Sourced from black's changelog.

    22.12.0

    Preview style

    • Enforce empty lines before classes and functions with sticky leading comments (#3302)
    • Reformat empty and whitespace-only files as either an empty file (if no newline is present) or as a single newline character (if a newline is present) (#3348)
    • Implicitly concatenated strings used as function args are now wrapped inside parentheses (#3307)
    • Correctly handle trailing commas that are inside a line's leading non-nested parens (#3370)

    Configuration

    • Fix incorrectly applied .gitignore rules by considering the .gitignore location and the relative path to the target file (#3338)
    • Fix incorrectly ignoring .gitignore presence when more than one source directory is specified (#3336)

    Parser

    • Parsing support has been added for walruses inside generator expression that are passed as function args (for example, any(match := my_re.match(text) for text in texts)) (#3327).

    Integrations

    • Vim plugin: Optionally allow using the system installation of Black via let g:black_use_virtualenv = 0(#3309)

    22.10.0

    Highlights

    • Runtime support for Python 3.6 has been removed. Formatting 3.6 code will still be supported until further notice.

    Stable style

    • Fix a crash when # fmt: on is used on a different block level than # fmt: off (#3281)

    ... (truncated)

    Commits

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    dependencies python 
    opened by dependabot[bot] 1
  • Bump actions/setup-python from 2.3.1 to 4.3.1

    Bump actions/setup-python from 2.3.1 to 4.3.1

    Bumps actions/setup-python from 2.3.1 to 4.3.1.

    Release notes

    Sourced from actions/setup-python's releases.

    Improve error handling and messages

    In scope of this release we added improved error message to put operating system and its version in the logs (actions/setup-python#559). Besides, the release

    v4.3.0

    • Update @​actions/core to 1.10.0 version #517
    • Update @​actions/cache to 3.0.4 version #499
    • Only use github.token on github.com #443
    • Improvement of documentation #477 #479 #491 #492

    Add check-latest input and bug fixes

    In scope of this release we add the check-latest input. If check-latest is set to true, the action first checks if the cached version is the latest one. If the locally cached version is not the most up-to-date, the version will then be downloaded from python-versions repository. By default check-latest is set to false. For PyPy it will to try to reach https://downloads.python.org/pypy/versions.json

    Example of usage:

    steps:
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v4
        with:
          python-version: '3.9'
          check-latest: true
      - run: python --version
    

    Besides, it includes such changes as

    v4.1.0

    In scope of this pull request we updated actions/cache package as the new version contains fixes for caching error handling. Moreover, we added a new input update-environment. This option allows to specify if the action shall update environment variables (default) or not.

    Update-environment input

        - name: setup-python 3.9
          uses: actions/setup-python@v4
          with:
            python-version: 3.9
            update-environment: false
    

    Besides, we added such changes as:

    ... (truncated)

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    dependencies github_actions 
    opened by dependabot[bot] 1
  • Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.6.1

    Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.6.1

    Bumps pypa/gh-action-pypi-publish from 1.4.2 to 1.6.1.

    Release notes

    Sourced from pypa/gh-action-pypi-publish's releases.

    v1.6.1

    What's happened?!

    There was a sneaky bug in v1.6.0 which caused Twine to be outside the import path in the Python runtime. It is fixed in v1.6.1 by updating $PYTHONPATH to point to a correct location of the user-global site-packages/ directory.

    Full Diff: https://github.com/pypa/gh-action-pypi-publish/compare/v1.6.0...v1.6.1

    v1.6.0

    Anything's changed?

    The only update is that the Python runtime has been upgraded from 3.9 to 3.11. There are no functional changes in this release.

    Full Changelog: https://github.com/pypa/gh-action-pypi-publish/compare/v1.5.2...v1.6.0

    v1.5.2

    What's Improved

    Full Diff: https://github.com/pypa/gh-action-pypi-publish/compare/v1.5.1...v1.5.2

    v1.5.1

    What's Changed

    Full Diff: https://github.com/pypa/gh-action-pypi-publish/compare/v1.5.0...v1.5.1

    v1.5.0

    What's Changed

    New Contributors

    Full Diff: https://github.com/pypa/gh-action-pypi-publish/compare/v1.4.2...v1.5.0

    Commits
    • 5d1679f Use py3.11 user-global site-packages in PYTHONPATH
    • d2a2496 Switch the runtime from Python 3.9 to Python 3.11
    • d7edd4c Add user-global site-packages to $PYTHONPATH
    • 8d5f27c Install Twine in the user-global site-packages
    • b0dc178 Disable pip cache dir with an env var
    • bbf6e0b Copy requirements to corresponding dir @ container
    • 0b69a8c Document broken pkginfo==1.9.0 transitive dep
    • c54db9c Integrate pip-tools-generated constraint files
    • 480ec4e Inherit yamllint config from the default preset
    • 5fb2f04 Drop __token__ from README code usage snippets
    • Additional commits viewable in compare view

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    dependencies github_actions 
    opened by dependabot[bot] 1
  • Bump pylint from 2.12.2 to 2.15.7

    Bump pylint from 2.12.2 to 2.15.7

    Bumps pylint from 2.12.2 to 2.15.7.

    Commits
    • 5a96370 Bump pylint to 2.15.7, update changelog (#7845)
    • 43109b6 Revert "Fix crash when using enumerate with start and a class attribu...
    • ff73282 Fix logging-fstring-interpolation false positive (#7846) (#7854)
    • 86b8c64 Fix crash when using enumerate with start and a class attribute (#7824)
    • ebf2824 Execute tests on maintenance branche's PR
    • 9ec1aa0 Do not crash if next() is called without arguments (#7831)
    • ac2da87 Upgrade the versions of astroid and dill (#7838)
    • 06d5d1a Add content: write rights for backporting job (#7826)
    • df5ebb5 Fix used-before-assignment for variable annotations guarded by TYPE_CHECKIN...
    • 1baf4be Deduplicate module file paths to prevent redundant scans. (#7747)
    • Additional commits viewable in compare view

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    dependencies python 
    opened by dependabot[bot] 1
  • Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.2

    Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.2

    Bumps pypa/gh-action-pypi-publish from 1.4.2 to 1.5.2.

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    v1.5.2

    What's Improved

    Full Diff: https://github.com/pypa/gh-action-pypi-publish/compare/v1.5.1...v1.5.2

    v1.5.1

    What's Changed

    Full Diff: https://github.com/pypa/gh-action-pypi-publish/compare/v1.5.0...v1.5.1

    v1.5.0

    What's Changed

    New Contributors

    Full Diff: https://github.com/pypa/gh-action-pypi-publish/compare/v1.4.2...v1.5.0

    Commits
    • d7edd4c Add user-global site-packages to $PYTHONPATH
    • 8d5f27c Install Twine in the user-global site-packages
    • b0dc178 Disable pip cache dir with an env var
    • bbf6e0b Copy requirements to corresponding dir @ container
    • 0b69a8c Document broken pkginfo==1.9.0 transitive dep
    • c54db9c Integrate pip-tools-generated constraint files
    • 480ec4e Inherit yamllint config from the default preset
    • 5fb2f04 Drop __token__ from README code usage snippets
    • 7bbdccd Update the mention of master with unstable/v1
    • 328cf89 📝 Fix a link to the "Distribution Package" term
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    opened by dependabot[bot] 1
  • Bump tox from 3.24.4 to 3.27.1

    Bump tox from 3.24.4 to 3.27.1

    Bumps tox from 3.24.4 to 3.27.1.

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    3.27.1

    What's Changed

    New Contributors

    Full Changelog: https://github.com/tox-dev/tox/compare/3.27.0...3.27.1

    3.27.0

    What's Changed

    New Contributors

    Full Changelog: https://github.com/tox-dev/tox/compare/3.26.0...3.27.0

    3.26.0

    What's Changed

    New Contributors

    Full Changelog: https://github.com/tox-dev/tox/compare/3.25.1...3.26.0

    3.25.1

    What's Changed

    ... (truncated)

    Changelog

    Sourced from tox's changelog.

    v3.27.1 (2022-11-13)

    Bugfixes ^^^^^^^^

    • Replaced deprecated license_file key with license_files in setup.cfg -- by :user:mgorny. [#2521](https://github.com/tox-dev/tox/issues/2521) <https://github.com/tox-dev/tox/issues/2521>_
    • Add env cleanup to envreport - fix PYTHONPATH leak into "envreport" -- by :user:f3flight. [#2528](https://github.com/tox-dev/tox/issues/2528) <https://github.com/tox-dev/tox/issues/2528>_

    v3.27.0 (2022-10-25)

    Bugfixes ^^^^^^^^

    • Dropped --build-option in isolated builds, an alternative fix for the SetuptoolsDeprecationWarning about using --global-option -- by :user:adamchainz [#2497](https://github.com/tox-dev/tox/issues/2497) <https://github.com/tox-dev/tox/issues/2497>_
    • Remove read-only files in ensure_empty_dir. [#2498](https://github.com/tox-dev/tox/issues/2498) <https://github.com/tox-dev/tox/issues/2498>_
    • Multiple tox instances no longer clobber the .tox directory when provision_tox_env is used. - by :user:masenf [#2515](https://github.com/tox-dev/tox/issues/2515) <https://github.com/tox-dev/tox/issues/2515>_

    Documentation ^^^^^^^^^^^^^

    • Clarify that install_command only takes one command - by :user:jugmac00 [#2433](https://github.com/tox-dev/tox/issues/2433) <https://github.com/tox-dev/tox/issues/2433>_
    • Documented problems with plugin and provision env - by :user:ziima. [#2469](https://github.com/tox-dev/tox/issues/2469) <https://github.com/tox-dev/tox/issues/2469>_

    v3.26.0 (2022-09-07)

    Bugfixes ^^^^^^^^

    • Fix fallback to python environment when isolated_build = true is set -- by :user:Unrud [#2474](https://github.com/tox-dev/tox/issues/2474) <https://github.com/tox-dev/tox/issues/2474>_
    • Fixed SetuptoolsDeprecationWarning about using --global-option -- by :user:adamchainz [#2478](https://github.com/tox-dev/tox/issues/2478) <https://github.com/tox-dev/tox/issues/2478>_

    Features ^^^^^^^^

    ... (truncated)

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    dependencies python 
    opened by dependabot[bot] 1
  • Bump pylint from 2.12.2 to 2.15.6

    Bump pylint from 2.12.2 to 2.15.6

    Bumps pylint from 2.12.2 to 2.15.6.

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    dependencies python 
    opened by dependabot[bot] 1
  • Bump release-drafter/release-drafter from 5.15.0 to 5.22.0

    Bump release-drafter/release-drafter from 5.15.0 to 5.22.0

    Bumps release-drafter/release-drafter from 5.15.0 to 5.22.0.

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    v5.22.0

    What's Changed

    New

    Full Changelog: https://github.com/release-drafter/release-drafter/compare/v5.21.1...v5.22.0

    v5.21.1

    What's Changed

    Dependency Updates

    Full Changelog: https://github.com/release-drafter/release-drafter/compare/v5.21.0...v5.21.1

    v5.21.0

    What's Changed

    New

    Full Changelog: https://github.com/release-drafter/release-drafter/compare/v5.20.1...v5.21.0

    v5.20.1

    What's Changed

    Bug Fixes

    Documentation

    Dependency Updates

    ... (truncated)

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    dependencies github_actions 
    opened by dependabot[bot] 0
  • Bump tox from 3.24.4 to 4.1.2

    Bump tox from 3.24.4 to 4.1.2

    Bumps tox from 3.24.4 to 4.1.2.

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    4.1.2

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.1.1...4.1.2

    4.1.1

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.1.0...4.1.1

    4.1.0

    What's Changed

    New Contributors

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.19...4.1.0

    4.0.18

    What's Changed

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.17...4.0.18

    4.0.17

    What's Changed

    New Contributors

    Full Changelog: https://github.com/tox-dev/tox/compare/4.0.16...4.0.17

    4.0.16

    What's Changed

    ... (truncated)

    Changelog

    Sourced from tox's changelog.

    v4.1.2 (2022-12-30)

    Bugfixes - 4.1.2

    - Fix ``--skip-missing-interpreters`` behaviour - by :user:`q0w`. (:issue:`2649`)
    - Restore tox 3 behaviour of showing the output of pip freeze, however now only active when running inside a CI
      environment - by :user:`gaborbernat`. (:issue:`2685`)
    - Fix extracting extras from markers with many extras - by :user:`q0w`. (:issue:`2791`)
    

    v4.1.1 (2022-12-29)

    Bugfixes - 4.1.1

    • Fix logging error with emoji in git branch name. (:issue:2768)

    Improved Documentation - 4.1.1

    - Add faq entry about re-use of environments - by :user:`jugmac00`. (:issue:`2788`)
    

    v4.1.0 (2022-12-29)

    Features - 4.1.0

    - ``-f`` can be used multiple times and on hyphenated factors (e.g. ``-f py311-django -f py39``) - by :user:`sirosen`. (:issue:`2766`)
    

    Improved Documentation - 4.1.0 </code></pre> <ul> <li>Fix a grammatical typo in docs/user_guide.rst. (:issue:<code>2787</code>)</li> </ul> <h2>v4.0.19 (2022-12-28)</h2> <p>Bugfixes - 4.0.19</p> <pre><code>- Create temp_dir if not exists - by :user:q0w. (:issue:2770)

    v4.0.18 (2022-12-26)

    Bugfixes - 4.0.18 </code></pre> <ul> <li>Strip leading and trailing whitespace when parsing elements in requirement files - by :user:<code>gaborbernat</code>. (:issue:<code>2773</code>)</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary>

    <ul> <li><a href="https://github.com/tox-dev/tox/commit/6253d6220486e17c6132f613cc6218c87b084417"><code>6253d62</code></a> release 4.1.2</li> <li><a href="https://github.com/tox-dev/tox/commit/196b20de4c969a163d34692d8a5d646cad4717d6"><code>196b20d</code></a> Fix extracting extras from markers with many extras (<a href="https://github-redirect.dependabot.com/tox-dev/tox/issues/2792">#2792</a>)</li> <li><a href="https://github.com/tox-dev/tox/commit/a3d3ec042d38195392841a9112911c2bde3587d1"><code>a3d3ec0</code></a> Show installed packages after setup in CI envs (<a href="https://github-redirect.dependabot.com/tox-dev/tox/issues/2794">#2794</a>)</li> <li><a href="https://github.com/tox-dev/tox/commit/d8c4cb0ffa1999b5d6466e0099dab76f242b1ba8"><code>d8c4cb0</code></a> Fix --skip-missing-interpreters (<a href="https://github-redirect.dependabot.com/tox-dev/tox/issues/2793">#2793</a>)</li> <li><a href="https://github.com/tox-dev/tox/commit/1d739a2641bcb0545815afbabf8b3da9694ec0ff"><code>1d739a2</code></a> release 4.1.1</li> <li><a href="https://github.com/tox-dev/tox/commit/b49d11867ab6bd7219c5b2c50f610e7829395975"><code>b49d118</code></a> Fix logging error with emoji in git branch name. (<a href="https://github-redirect.dependabot.com/tox-dev/tox/issues/2790">#2790</a>)</li> <li><a href="https://github.com/tox-dev/tox/commit/c83819262b4b739899af8a0bd7b6f32442344e4a"><code>c838192</code></a> Add faq entry about re-use of environments (<a href="https://github-redirect.dependabot.com/tox-dev/tox/issues/2789">#2789</a>)</li> <li><a href="https://github.com/tox-dev/tox/commit/e0aed508607d34559610fbb0d2b4fd038da9c11b"><code>e0aed50</code></a> release 4.1.0</li> <li><a href="https://github.com/tox-dev/tox/commit/6cdd99cc3ce4fc73455374b40f2dd8a95ef101c5"><code>6cdd99c</code></a> Improved factor selection to allow multiple uses of <code>-f</code> for &quot;OR&quot; and to allo...</li> <li><a href="https://github.com/tox-dev/tox/commit/6f056cafcca6cee4b23a35fdfc2044647c99e8d7"><code>6f056ca</code></a> Update user_guide.rst (<a href="https://github-redirect.dependabot.com/tox-dev/tox/issues/2787">#2787</a>)</li> <li>Additional commits viewable in <a href="https://github.com/tox-dev/tox/compare/3.24.4...4.1.2">compare view</a></li> </ul> </details>

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    dependencies python 
    opened by dependabot[bot] 0
  • Bump actions/setup-python from 2.3.1 to 4.4.0

    Bump actions/setup-python from 2.3.1 to 4.4.0

    Bumps actions/setup-python from 2.3.1 to 4.4.0.

    Release notes

    Sourced from actions/setup-python's releases.

    Add support to install multiple python versions

    In scope of this release we added support to install multiple python versions. For this you can try to use this snippet:

        - uses: actions/setup-python@v4
          with:
            python-version: |
                3.8
                3.9
                3.10
    

    Besides, we changed logic with throwing the error for GHES if cache is unavailable to warn (actions/setup-python#566).

    Improve error handling and messages

    In scope of this release we added improved error message to put operating system and its version in the logs (actions/setup-python#559). Besides, the release

    v4.3.0

    • Update @​actions/core to 1.10.0 version #517
    • Update @​actions/cache to 3.0.4 version #499
    • Only use github.token on github.com #443
    • Improvement of documentation #477 #479 #491 #492

    Add check-latest input and bug fixes

    In scope of this release we add the check-latest input. If check-latest is set to true, the action first checks if the cached version is the latest one. If the locally cached version is not the most up-to-date, the version will then be downloaded from python-versions repository. By default check-latest is set to false. For PyPy it will to try to reach https://downloads.python.org/pypy/versions.json

    Example of usage:

    steps:
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v4
        with:
          python-version: '3.9'
          check-latest: true
      - run: python --version
    

    Besides, it includes such changes as

    v4.1.0

    In scope of this pull request we updated actions/cache package as the new version contains fixes for caching error handling. Moreover, we added a new input update-environment. This option allows to specify if the action shall update environment variables (default) or not.

    Update-environment input

    ... (truncated)

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    dependencies github_actions 
    opened by dependabot[bot] 0
  • Bump pylint from 2.12.2 to 2.15.9

    Bump pylint from 2.12.2 to 2.15.9

    Bumps pylint from 2.12.2 to 2.15.9.

    Commits
    • 1ded4d0 Bump pylint to 2.15.9, update changelog (#7952)
    • 785c629 [testutil] More information in output for functional test fail (#7948)
    • 3c3ab98 [pypy3.8] Disable multiple-statements false positive on affected functional t...
    • dca3940 Fix inconsistent argument exit code when argparse exit with its own error cod...
    • 494e514 Fix ModuleNotFoundError when using pylint_django (#7940) (#7941)
    • 83668de fix: bump dill to >= 0.3.6, prevents tests hanging with python3.11 (#7918)
    • eadc308 [github actions] Fix enchant's install in the spelling job
    • 391323e Avoid hanging forever after a parallel job was killed (#7834) (#7930)
    • 4655b92 Prevent used-before-assignment in pattern matching with a guard (#7922) (#7...
    • 1f84ed9 Bump pylint to 2.15.8, update changelog (#7899)
    • Additional commits viewable in compare view

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    dependencies python 
    opened by dependabot[bot] 0
  • Bump black from 21.12b0 to 23.1a1

    Bump black from 21.12b0 to 23.1a1

    Bumps black from 21.12b0 to 23.1a1.

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    23.1a1

    This release provides a preview of Black's 2023 stable style. Black's default formatting style includes the following changes:

    • Enforce empty lines before classes and functions with sticky leading comments (#3302) (22.12.0)
    • Reformat empty and whitespace-only files as either an empty file (if no newline is present) or as a single newline character (if a newline is present) (#3348) (22.12.0)
    • Implicitly concatenated strings used as function args are now wrapped inside parentheses (#3307) (22.12.0)
    • Correctly handle trailing commas that are inside a line's leading non-nested parens (#3370) (22.12.0)
    • --skip-string-normalization / -S now prevents docstring prefixes from being normalized as expected (#3168) (since 22.8.0)
    • When using --skip-magic-trailing-comma or -C, trailing commas are stripped from subscript expressions with more than 1 element (#3209) (22.8.0)
    • Implicitly concatenated strings inside a list, set, or tuple are now wrapped inside parentheses (#3162) (22.8.0)
    • Fix a string merging/split issue when a comment is present in the middle of implicitly concatenated strings on its own line (#3227) (22.8.0)
    • Docstring quotes are no longer moved if it would violate the line length limit (#3044, #3430) (22.6.0)
    • Parentheses around return annotations are now managed (#2990) (22.6.0)
    • Remove unnecessary parentheses around awaited objects (#2991) (22.6.0)
    • Remove unnecessary parentheses in with statements (#2926) (22.6.0)
    • Remove trailing newlines after code block open (#3035) (22.6.0)
    • Code cell separators #%% are now standardised to # %% (#2919) (22.3.0)
    • Remove unnecessary parentheses from except statements (#2939) (22.3.0)
    • Remove unnecessary parentheses from tuple unpacking in for loops (#2945) (22.3.0)
    • Avoid magic-trailing-comma in single-element subscripts (#2942) (22.3.0)

    Please try it out and give feedback here: psf/black#3407

    A stable 23.1.0 release will follow in January 2023.

    22.12.0

    Preview style

    • Enforce empty lines before classes and functions with sticky leading comments (#3302)
    • Reformat empty and whitespace-only files as either an empty file (if no newline is present) or as a single newline character (if a newline is present) (#3348)
    • Implicitly concatenated strings used as function args are now wrapped inside parentheses (#3307)
    • Correctly handle trailing commas that are inside a line's leading non-nested parens (#3370)

    Configuration

    ... (truncated)

    Changelog

    Sourced from black's changelog.

    Change Log

    Unreleased

    Highlights

    Stable style

    • Fix a crash when a colon line is marked between # fmt: off and # fmt: on (#3439)

    Preview style

    • Fix a crash in preview style with assert + parenthesized string (#3415)
    • Fix crashes in preview style with walrus operators used in function return annotations and except clauses (#3423)
    • Do not put the closing quotes in a docstring on a separate line, even if the line is too long (#3430)
    • Long values in dict literals are now wrapped in parentheses; correspondingly unnecessary parentheses around short values in dict literals are now removed; long string lambda values are now wrapped in parentheses (#3440)

    Configuration

    Packaging

    • Upgrade mypyc from 0.971 to 0.991 so mypycified Black can be built on armv7 (#3380)
    • Drop specific support for the tomli requirement on 3.11 alpha releases, working around a bug that would cause the requirement not to be installed on any non-final Python releases (#3448)

    Parser

    Performance

    Output

    ... (truncated)

    Commits

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    dependencies python 
    opened by dependabot[bot] 0
  • Bump actions/checkout from 2.4.0 to 3.2.0

    Bump actions/checkout from 2.4.0 to 3.2.0

    Bumps actions/checkout from 2.4.0 to 3.2.0.

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    v3.2.0

    What's Changed

    New Contributors

    Full Changelog: https://github.com/actions/checkout/compare/v3...v3.2.0

    v3.1.0

    What's Changed

    New Contributors

    Full Changelog: https://github.com/actions/checkout/compare/v3.0.2...v3.1.0

    v3.0.2

    What's Changed

    Full Changelog: https://github.com/actions/checkout/compare/v3...v3.0.2

    v3.0.1

    v3.0.0

    • Updated to the node16 runtime by default
      • This requires a minimum Actions Runner version of v2.285.0 to run, which is by default available in GHES 3.4 or later.

    v2.5.0

    What's Changed

    Full Changelog: https://github.com/actions/checkout/compare/v2...v2.5.0

    ... (truncated)

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    Changelog

    v3.1.0

    v3.0.2

    v3.0.1

    v3.0.0

    v2.3.1

    v2.3.0

    v2.2.0

    v2.1.1

    • Changes to support GHES (here and here)

    v2.1.0

    v2.0.0

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    dependencies github_actions 
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