Snakemake workflow for converting FASTQ files to self-contained CRAM files with maximum lossless compression.

Overview

Snakemake workflow:

Snakemake GitHub actions status

A Snakemake workflow for

Usage

The usage of this workflow is described in the Snakemake Workflow Catalog.

If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) sitory and its DOI (see above).

TODO

  • Replace and everywhere in the template (also under .github/workflows) with the correct name and owning user or organization.
  • Replace with the workflow name (can be the same as ).
  • Replace with a description of what the workflow does.
  • The workflow will occur in the snakemake-workflow-catalog once it has been made public. Then the link under "Usage" will point to the usage instructions if and were correctly set.
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