Reggy - Regressions with arbitrarily complex regularization terms

Overview

reggy

PyPI Tests

Regressions with arbitrarily complex regularization terms.

Currently supported regularization terms:

  • LASSO

Installation

$ pip install reggy

Usage

A simple example with LASSO regularization:

import reggy
import numpy as np


alpha = 0.3
beta = 1.7

X = np.random.normal(size=(1000, 1))
y = np.random.normal(X * beta + alpha, size=(1000, 1))

model = reggy.RegReg(X, y, family=reggy.gaussian_family, regularizers=[reggy.lasso])
model.fit()

print(model.coef())
## (array([[0.27395004]], dtype=float32), array([[1.2682909]], dtype=float32))
Comments
  • Update tensorflow-probability requirement from ^0.17 to >=0.17,<0.19

    Update tensorflow-probability requirement from ^0.17 to >=0.17,<0.19

    Updates the requirements on tensorflow-probability to permit the latest version.

    Release notes

    Sourced from tensorflow-probability's releases.

    TensorFlow Probability 0.18.0

    Release notes

    This is the 0.18.0 release of TensorFlow Probability. It is tested and stable against TensorFlow version 2.10 and JAX 0.3.17 .

    Change notes

    [coming soon]

    Huge thanks to all the contributors to this release!

    [coming soon]

    Commits
    • 68d4382 When using TensorFlow, TFP 0.18 requires TF 2.10+.
    • d1ba88e Update version for the TFP 0.18.0 release.
    • 14db88b Use dtype_util inside LGSSM to infer dtype.
    • 24301c5 Change tfp/experimental to use internal imports to speed up tests.
    • c03f005 Re-enable ZeroInflatedNegativeBinomial in distribution_properties_test.
    • cc84214 Correctly expose sub-distribution parameters in distributions created by
    • 1999fbe Disable ZeroInflatedNegativeBinomial in distribution_properties_test
    • 1784cd6 Block bad tf-nightly release from 2022-09-02 (missing x86 manylinux wheels)
    • 0990bc9 Change stats/, mcmc/, monte_carlo/ optimizer/ and vi/ to use most specific im...
    • de75e2d Update pairwise_square_distance_matrix(x, x) to always have zero diagonals.
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  • Update tensorflow-probability requirement from >=0.15,<0.17 to >=0.15,<0.18

    Update tensorflow-probability requirement from >=0.15,<0.17 to >=0.15,<0.18

    Updates the requirements on tensorflow-probability to permit the latest version.

    Release notes

    Sourced from tensorflow-probability's releases.

    TensorFlow Probability 0.17.0

    Release notes

    This is the 0.17.0 release of TensorFlow Probability. It is tested and stable against TensorFlow version 2.9.1 and JAX 0.3.13 .

    Huge thanks to all the contributors to this release!

    [coming soon]

    Commits
    • e3d67c0 Update version for the TFP 0.17.0 release.
    • bfe7d2b Revert "Fix TensorFlow checkpoint and trackable imports."
    • 6d04325 Increase tolerance in LinearOperatorUnitaryTest.test_solve.
    • 5172cc7 Merge pull request #1569 from ryanrussell:main
    • 6685d04 Merge pull request #1573 from RenuPatelGoogle:patch-1
    • b689df6 Add holidays as a test dependency for TFP.
    • 8e72c11 Fix failure in windowed_sampling_test.jax in OSS.
    • 9cdc4ee Fixed few code lines in this API example
    • f8107c1 DOCFIX: Correct Markov state distribution notation in EnKF. The distributions...
    • 0a10dd4 Fix TensorFlow checkpoint and trackable imports.
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  • Update tensorflow-probability requirement from ^0.15.0 to >=0.15,<0.17

    Update tensorflow-probability requirement from ^0.15.0 to >=0.15,<0.17

    Updates the requirements on tensorflow-probability to permit the latest version.

    Release notes

    Sourced from tensorflow-probability's releases.

    TensorFlow Probability 0.16.0

    Release notes

    This is the 0.16.0 release of TensorFlow Probability. It is tested and stable against TensorFlow version 2.8.0 and JAX 0.3.0 .

    Change notes

    [coming soon]

    Huge thanks to all the contributors to this release!

    [coming soon]

    Commits
    • 88d217d Set version for TFP 0.16.0 release.
    • 1407b47 Add tfp.experimental.psd_kernels.AdditiveKernel.
    • 6e83921 Thread STS name into its joint distribution
    • afbc1a5 Remove usage of deprecated layer API.
    • 1d651d6 Add an is_missing argument to GaussianProcess.log_prob.
    • 93e0365 Fix typo.
    • 273eba3 Add tfp.math.psd_kernels.SpectralMixture.
    • 20c4ce2 Add experimental multi-task kernels and multi-task GPs.
    • 53e48fd Update collections.Iterable to collections.abc.Iterable for Python 3.10.
    • 08a3bb1 Update generated tensor_shape file in the Numpy backend.
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  • Update pytest requirement from ^6.2.1 to ^7.0.0

    Update pytest requirement from ^6.2.1 to ^7.0.0

    Updates the requirements on pytest to permit the latest version.

    Release notes

    Sourced from pytest's releases.

    7.0.0

    pytest 7.0.0 (2022-02-03)

    (Please see the full set of changes for this release also in the 7.0.0rc1 notes below)

    Deprecations

    • #9488: If custom subclasses of nodes like pytest.Item{.interpreted-text role="class"} override the __init__ method, they should take **kwargs. See uncooperative-constructors-deprecated{.interpreted-text role="ref"} for details.

      Note that a deprection warning is only emitted when there is a conflict in the arguments pytest expected to pass. This deprecation was already part of pytest 7.0.0rc1 but wasn't documented.

    Bug Fixes

    • #9355: Fixed error message prints function decorators when using assert in Python 3.8 and above.
    • #9396: Ensure pytest.Config.inifile{.interpreted-text role="attr"} is available during the pytest_cmdline_main <_pytest.hookspec.pytest_cmdline_main>{.interpreted-text role="func"} hook (regression during 7.0.0rc1).

    Improved Documentation

    • #9404: Added extra documentation on alternatives to common misuses of [pytest.warns(None)]{.title-ref} ahead of its deprecation.
    • #9505: Clarify where the configuration files are located. To avoid confusions documentation mentions that configuration file is located in the root of the repository.

    Trivial/Internal Changes

    • #9521: Add test coverage to assertion rewrite path.

    pytest 7.0.0rc1 (2021-12-06)

    Breaking Changes

    • #7259: The Node.reportinfo() <non-python tests>{.interpreted-text role="ref"} function first return value type has been expanded from [py.path.local | str]{.title-ref} to [os.PathLike[str] | str]{.title-ref}.

      Most plugins which refer to [reportinfo()]{.title-ref} only define it as part of a custom pytest.Item{.interpreted-text role="class"} implementation. Since [py.path.local]{.title-ref} is a [os.PathLike[str]]{.title-ref}, these plugins are unaffacted.

      Plugins and users which call [reportinfo()]{.title-ref}, use the first return value and interact with it as a [py.path.local]{.title-ref}, would need to adjust by calling [py.path.local(fspath)]{.title-ref}. Although preferably, avoid the legacy [py.path.local]{.title-ref} and use [pathlib.Path]{.title-ref}, or use [item.location]{.title-ref} or [item.path]{.title-ref}, instead.

      Note: pytest was not able to provide a deprecation period for this change.

    ... (truncated)

    Commits
    • 3554b83 Add note to changelog
    • 6ea7f99 Prepare release version 7.0.0
    • 737b220 [7.0.x] releasing: Add template for major releases (#9597)
    • 7fa3972 [7.0.x] releasing: Always set doc_version (#9590)
    • b304499 [7.0.x] Make 'warnings' and 'deselected' in assert_outcomes optional (#9566)
    • f17525d [7.0.x] doc: Add ellipsis to warning usecase list (#9562)
    • 0a7be97 ci: Bump up timeout (#9565)
    • c17908c [7.0.x] doc: Recategorize 7.0.0 changelog items (#9564)
    • ab549bb [7.0.x] Add missing cooperative constructor changelog (#9563)
    • 4b1707f [7.0.x] Autouse linearization graph (#9557)
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  • Update black requirement from ^21.12b0 to ^22.1

    Update black requirement from ^21.12b0 to ^22.1

    Updates the requirements on black to permit the latest version.

    Release notes

    Sourced from black's releases.

    22.1.0

    At long last, Black is no longer a beta product! This is the first non-beta release and the first release covered by our new stability policy.

    Highlights

    • Remove Python 2 support (#2740)
    • Introduce the --preview flag (#2752)

    Style

    • Deprecate --experimental-string-processing and move the functionality under --preview (#2789)
    • For stubs, one blank line between class attributes and methods is now kept if there's at least one pre-existing blank line (#2736)
    • Black now normalizes string prefix order (#2297)
    • Remove spaces around power operators if both operands are simple (#2726)
    • Work around bug that causes unstable formatting in some cases in the presence of the magic trailing comma (#2807)
    • Use parentheses for attribute access on decimal float and int literals (#2799)
    • Don't add whitespace for attribute access on hexadecimal, binary, octal, and complex literals (#2799)
    • Treat blank lines in stubs the same inside top-level if statements (#2820)
    • Fix unstable formatting with semicolons and arithmetic expressions (#2817)
    • Fix unstable formatting around magic trailing comma (#2572)

    Parser

    • Fix mapping cases that contain as-expressions, like case {"key": 1 | 2 as password} (#2686)
    • Fix cases that contain multiple top-level as-expressions, like case 1 as a, 2 as b (#2716)
    • Fix call patterns that contain as-expressions with keyword arguments, like case Foo(bar=baz as quux) (#2749)
    • Tuple unpacking on return and yield constructs now implies 3.8+ (#2700)
    • Unparenthesized tuples on annotated assignments (e.g values: Tuple[int, ...] = 1, 2, 3) now implies 3.8+ (#2708)
    • Fix handling of standalone match() or case() when there is a trailing newline or a comment inside of the parentheses. (#2760)
    • from __future__ import annotations statement now implies Python 3.7+ (#2690)

    Performance

    • Speed-up the new backtracking parser about 4X in general (enabled when --target-version is set to 3.10 and higher). (#2728)
    • Black is now compiled with mypyc for an overall 2x speed-up. 64-bit Windows, MacOS, and Linux (not including musl) are supported. (#1009, #2431)

    Configuration

    • Do not accept bare carriage return line endings in pyproject.toml (#2408)
    • Add configuration option (python-cell-magics) to format cells with custom magics in Jupyter Notebooks (#2744)
    • Allow setting custom cache directory on all platforms with environment variable BLACK_CACHE_DIR (#2739).
    • Enable Python 3.10+ by default, without any extra need to specify --target-version=py310. (#2758)
    • Make passing SRC or --code mandatory and mutually exclusive (#2804)

    Output

    • Improve error message for invalid regular expression (#2678)
    • Improve error message when parsing fails during AST safety check by embedding the underlying SyntaxError (#2693)
    • No longer color diff headers white as it's unreadable in light themed terminals (#2691)
    • Text coloring added in the final statistics (#2712)
    • Verbose mode also now describes how a project root was discovered and which paths will be formatted. (#2526)

    Packaging

    • All upper version bounds on dependencies have been removed (#2718)
    • typing-extensions is no longer a required dependency in Python 3.10+ (#2772)
    • Set click lower bound to 8.0.0 as Black crashes on 7.1.2 (#2791)

    ... (truncated)

    Changelog

    Sourced from black's changelog.

    22.1.0

    At long last, Black is no longer a beta product! This is the first non-beta release and the first release covered by our new stability policy.

    Highlights

    • Remove Python 2 support (#2740)
    • Introduce the --preview flag (#2752)

    Style

    • Deprecate --experimental-string-processing and move the functionality under --preview (#2789)
    • For stubs, one blank line between class attributes and methods is now kept if there's at least one pre-existing blank line (#2736)
    • Black now normalizes string prefix order (#2297)
    • Remove spaces around power operators if both operands are simple (#2726)
    • Work around bug that causes unstable formatting in some cases in the presence of the magic trailing comma (#2807)
    • Use parentheses for attribute access on decimal float and int literals (#2799)
    • Don't add whitespace for attribute access on hexadecimal, binary, octal, and complex literals (#2799)
    • Treat blank lines in stubs the same inside top-level if statements (#2820)
    • Fix unstable formatting with semicolons and arithmetic expressions (#2817)
    • Fix unstable formatting around magic trailing comma (#2572)

    Parser

    • Fix mapping cases that contain as-expressions, like case {"key": 1 | 2 as password} (#2686)
    • Fix cases that contain multiple top-level as-expressions, like case 1 as a, 2 as b (#2716)
    • Fix call patterns that contain as-expressions with keyword arguments, like case Foo(bar=baz as quux) (#2749)
    • Tuple unpacking on return and yield constructs now implies 3.8+ (#2700)
    • Unparenthesized tuples on annotated assignments (e.g values: Tuple[int, ...] = 1, 2, 3) now implies 3.8+ (#2708)
    • Fix handling of standalone match() or case() when there is a trailing newline or a comment inside of the parentheses. (#2760)
    • from __future__ import annotations statement now implies Python 3.7+ (#2690)

    Performance

    • Speed-up the new backtracking parser about 4X in general (enabled when --target-version is set to 3.10 and higher). (#2728)
    • Black is now compiled with mypyc for an overall 2x speed-up. 64-bit Windows, MacOS, and Linux (not including musl) are supported. (#1009, #2431)

    ... (truncated)

    Commits

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  • Update black requirement from ^20.8b1 to ^21.12b0

    Update black requirement from ^20.8b1 to ^21.12b0

    Updates the requirements on black to permit the latest version.

    Release notes

    Sourced from black's releases.

    21.12b0

    Black

    • Fix determination of f-string expression spans (#2654)
    • Fix bad formatting of error messages about EOF in multi-line statements (#2343)
    • Functions and classes in blocks now have more consistent surrounding spacing (#2472)

    Jupyter Notebook support

    • Cell magics are now only processed if they are known Python cell magics. Earlier, all cell magics were tokenized, leading to possible indentation errors e.g. with %%writefile. (#2630)
    • Fix assignment to environment variables in Jupyter Notebooks (#2642)

    Python 3.10 support

    • Point users to using --target-version py310 if we detect 3.10-only syntax (#2668)
    • Fix match statements with open sequence subjects, like match a, b: or match a, *b: (#2639) (#2659)
    • Fix match/case statements that contain match/case soft keywords multiple times, like match re.match() (#2661)
    • Fix case statements with an inline body (#2665)
    • Fix styling of starred expressions inside match subject (#2667)
    • Fix parser error location on invalid syntax in a match statement (#2649)
    • Fix Python 3.10 support on platforms without ProcessPoolExecutor (#2631)
    • Improve parsing performance on code that uses match under --target-version py310 up to ~50% (#2670)

    Packaging


    Thank you!

    • @​isidentical for the polishing up 3.10 syntax support (which they contributed in the first place!)
    • @​MarcoGorelli for their ever-continuing work on Black's jupyter support
    • @​jalaziz for cleaning up our Pyinstaller CD workflow
    • @​hauntsaninja for helping us drop the regex dependency

    And also congrats to first contributors!

    Changelog

    Sourced from black's changelog.

    21.12b0

    Black

    • Fix determination of f-string expression spans (#2654)
    • Fix bad formatting of error messages about EOF in multi-line statements (#2343)
    • Functions and classes in blocks now have more consistent surrounding spacing (#2472)
    • from __future__ import annotations statement now implies Python 3.7+ (#2690)

    Jupyter Notebook support

    • Cell magics are now only processed if they are known Python cell magics. Earlier, all cell magics were tokenized, leading to possible indentation errors e.g. with %%writefile. (#2630)
    • Fix assignment to environment variables in Jupyter Notebooks (#2642)

    Python 3.10 support

    • Point users to using --target-version py310 if we detect 3.10-only syntax (#2668)
    • Fix match statements with open sequence subjects, like match a, b: or match a, *b: (#2639) (#2659)
    • Fix match/case statements that contain match/case soft keywords multiple times, like match re.match() (#2661)
    • Fix case statements with an inline body (#2665)
    • Fix styling of starred expressions inside match subject (#2667)
    • Fix parser error location on invalid syntax in a match statement (#2649)
    • Fix Python 3.10 support on platforms without ProcessPoolExecutor (#2631)
    • Improve parsing performance on code that uses match under --target-version py310 up to ~50% (#2670)

    Packaging

    21.11b1

    Black

    • Bumped regex version minimum to 2021.4.4 to fix Pattern class usage (#2621)

    21.11b0

    Black

    • Warn about Python 2 deprecation in more cases by improving Python 2 only syntax detection (#2592)
    • Add experimental PyPy support (#2559)
    • Add partial support for the match statement. As it's experimental, it's only enabled when --target-version py310 is explicitly specified (#2586)
    • Add support for parenthesized with (#2586)

    ... (truncated)

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CJK computer science terms comparison This repository contains the source code of the website. You can see the website from the following link: Englis

Hong Minhee (洪 民憙) 88 Dec 23, 2022
PRAnCER is a web platform that enables the rapid annotation of medical terms within clinical notes.

PRAnCER (Platform enabling Rapid Annotation for Clinical Entity Recognition) is a web platform that enables the rapid annotation of medical terms within clinical notes. A user can highlight spans of text and quickly map them to concepts in large vocabularies within a single, intuitive platform.

Sontag Lab 39 Nov 14, 2022
The coda and data for "Measuring Fine-Grained Domain Relevance of Terms: A Hierarchical Core-Fringe Approach" (ACL '21)

We propose a hierarchical core-fringe learning framework to measure fine-grained domain relevance of terms – the degree that a term is relevant to a broad (e.g., computer science) or narrow (e.g., deep learning) domain.

Jie Huang 14 Oct 21, 2022
Locally Enhanced Self-Attention: Rethinking Self-Attention as Local and Context Terms

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Simple yet efficient tool used to check and sort tokens in terms of there validation.

Discord Token Checker Simple yet efficient tool used to check and sort tokens in terms of there validation.When the program is done,go to the "output"

Robotnik 15 Dec 27, 2022
The blancmange curve can be visually built up out of triangle wave functions if the infinite sum is approximated by finite sums of the first few terms.

Blancmange-curve The blancmange curve can be visually built up out of triangle wave functions if the infinite sum is approximated by finite sums of th

Shankar Mahadevan L 1 Nov 30, 2021
Search for terms(word / table / field name or any) under Snowflake schema names

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Igal Emona 1 Dec 15, 2021
Implemented a Google Maps prototype that provides the shortest route in terms of distance

Implemented a Google Maps prototype that provides the shortest route in terms of distance, the fastest route, the route with the fewest turns, and a scenic route that avoids roads when provided a source and destination. The algorithms used were DFS, BFS, A*, and Iterative Depth First Search.

null 1 Dec 26, 2021
Consistency Regularization for Adversarial Robustness

Consistency Regularization for Adversarial Robustness Official PyTorch implementation of Consistency Regularization for Adversarial Robustness by Jiho

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Code for CoMatch: Semi-supervised Learning with Contrastive Graph Regularization

CoMatch: Semi-supervised Learning with Contrastive Graph Regularization (Salesforce Research) This is a PyTorch implementation of the CoMatch paper [B

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