Python Fasta Resources

Sc2rf - SARS-Cov-2 Recombinant Finder Pronounced: Scarf What's this? Sc2rf can search genome sequences of SARS-CoV-2 for potential recombinants - new

dssp-wsl Converting PDB (Protein Data Bank) file format to DSSP file format is required for generating datasets of peptides and their secondary struct

Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.

A script written in Python that returns a consensus string and profile matrix of a given DNA string(s) in FASTA format.

codon_optimize_cds_with_many_taxids_singlefasta Linux GUI app to codon optimize many single-fasta files with coding sequences, using many taxonomy ids

codon optimize cds paired with taxids singlefastas gui Linux GUI app to codon optimize a directory with fasta files using taxonomy ids imported as a 1

Python_snippets_for_bioinformatics Python code snippets for extracting PDB codes from .fasta files If you have a single .fasta file for all protein se

miniFASTA An easy FASTA object handler, reader, writer and translator for small to medium size projects without dependencies. Installation Using pip /

Sequence clustering and database creation using mmseqs, from local fasta files

gff-rename Replace the sequence IDs in a gff3 file with a set of provided sequence IDs from a genom.fasta. This is useful when a gff3 file is retrieve

Fasta Uploader A tool for batch processing large fasta files and accompanying metadata table to repositories via API The python fasta_uploader.py scri

popPhyl_PCA Performs PCA of genotypes. Works in two steps. 1. Input file A single fasta file containing different loci, in different populations/speci