114 Repositories
Python fluorescence-microscopy-imaging Libraries
Kaggle | 9th place single model solution for TGS Salt Identification Challenge
UNet for segmenting salt deposits from seismic images with PyTorch. General We, tugstugi and xuyuan, have participated in the Kaggle competition TGS S
276 Dec 20, 2022
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
1.2k Jan 4, 2023
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
What is nnDetection? Simultaneous localisation and categorization of objects in medical images, also referred to as medical object detection, is of hi
365 Jan 9, 2023
A medical imaging framework for Pytorch
Welcome to MedicalTorch MedicalTorch is an open-source framework for PyTorch, implementing an extensive set of loaders, pre-processors and datasets fo
799 Jan 3, 2023
Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT
CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT CheXbert is an accurate, automated dee
51 Dec 8, 2022
The code release of paper 'Domain Generalization for Medical Imaging Classification with Linear-Dependency Regularization' NIPS 2020.
Domain Generalization for Medical Imaging Classification with Linear Dependency Regularization The code release of paper 'Domain Generalization for Me
56 Dec 28, 2022
Open Delmic Microscope Software
Odemis Odemis (Open Delmic Microscope Software) is the open-source microscopy software of Delmic B.V. Odemis is used for controlling microscopes of De
32 Dec 14, 2022
3D medical imaging reconstruction software
InVesalius InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesaliu
443 Jan 1, 2023
Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation"
Medical-Transformer Pytorch Code for the paper "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" About this repo: This repo
615 Dec 25, 2022
3D Reconstruction Software
Meshroom is a free, open-source 3D Reconstruction Software based on the AliceVision Photogrammetric Computer Vision framework. Learn more details abou
8.7k Jan 2, 2023
the code used for the preprint Embedding-based Instance Segmentation of Microscopy Images.
EmbedSeg Introduction This repository hosts the version of the code used for the preprint Embedding-based Instance Segmentation of Microscopy Images.
88 Dec 25, 2022
Easy and comprehensive assessment of predictive power, with support for neuroimaging features
Documentation: https://raamana.github.io/neuropredict/ News As of v0.6, neuropredict now supports regression applications i.e. predicting continuous t
93 Nov 29, 2022
Machine learning for NeuroImaging in Python
nilearn Nilearn enables approachable and versatile analyses of brain volumes. It provides statistical and machine-learning tools, with instructive doc
919 Dec 25, 2022
The friendly PIL fork (Python Imaging Library)
Pillow Python Imaging Library (Fork) Pillow is the friendly PIL fork by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lund
10.4k Dec 31, 2022