Python Medical-imaging-datasets Resources

Disclaimer This code is provided for research and development use only. This code is not intended for use in clinical decision-making or for any other

HuggingArtists - Train a model to generate lyrics Create AI-Artist in just 5 minutes! 🚀 Run the demo notebook to train 🚀 Run the GUI demo to test Di

MetaShift: A Dataset of Datasets for Evaluating Distribution Shifts and Training Conflicts This repo provides the PyTorch source code of our paper: Me

DendroMap DendroMap is an interactive tool to explore large-scale image datasets used for machine learning. A deep understanding of your data can be v

Visual Transformer for Facial Emotion Recognition (FER) This project has the aim to build an efficient Visual Transformer for the Facial Emotion Recog

Squirrel Core Share, load, and transform data in a collaborative, flexible, and efficient way What is Squirrel? Squirrel is a Python library that enab

Causality-inspired Single-source Domain Generalization for Medical Image Segmentation Arxiv preprint Repository under construction. Might still be bug

MedMCQA MedMCQA : A Large-scale Multi-Subject Multi-Choice Dataset for Medical domain Question Answering A large-scale, Multiple-Choice Question Answe

jie jie is a spatial genome aligner. This package parses true chromatin imaging signal from noise by aligning signals to a reference DNA polymer model

Billion-Scale ANN http://big-ann-benchmarks.com/ Install The only prerequisite is Python (tested with 3.6) and Docker. Works with newer versions of Py

[Project] [PDF] This repository contains code for our SIGGRAPH'22 paper "StyleGAN-XL: Scaling StyleGAN to Large Diverse Datasets" by Axel Sauer, Katja

APEACH - Korean Hate Speech Evaluation Datasets APEACH is the first crowd-generated Korean evaluation dataset for hate speech detection. Sentences of

CLIPfa: Connecting Farsi Text and Images OpenAI released the paper Learning Transferable Visual Models From Natural Language Supervision in which they

Basic Machine Learning Algorithms All the basic Machine Learning Algorithms are implemented in Python using libraries Acknowledgements Machine Learnin

medical by LAION This repository will be a summary and outlook on all our open, medical, AI advancements. See the medical-general channel in the medic

Azimuth, an open-source dataset and error analysis tool for text classification, with love from ServiceNow. Overview Azimuth is an open source applica

Underwater Light Field Retention : Neural Rendering for Underwater Imaging (UWNR) (Accepted by CVPR Workshop2022 NTIRE) Authors: Tian Ye†, Sixiang Che

Adansons Base is a data management tool that organizes metadata of unstructured data and creates and organizes datasets. It makes dataset creation more effective and helps find essential insights from training results and improves AI performance.

Kaggle Competition: Forest Cover Type Prediction In this project we predict the forest cover type (the predominant kind of tree cover) using the carto

Project: Text Analysis - This project aims to conduct a text information retrieval and text mining on medical research publication regarding Covid19 -

On-the-Fly Adaptation Official Pytorch Code base for On-the-Fly Test-time Adaptation for Medical Image Segmentation Paper Introduction One major probl

datasets_sql A 🤗 Datasets extension package that provides support for executing arbitrary SQL queries on HF datasets. It uses DuckDB as a SQL engine

VHub - An API that permits uploading of vulnerability datasets and return of the serialized data

Code and Datasets from the paper "Self-supervised contrastive learning for volcanic unrest detection from InSAR data" You can download the pretrained

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

Crowd-Kit: Computational Quality Control for Crowdsourcing Documentation Crowd-Kit is a powerful Python library that implements commonly-used aggregat

FAST is an open-source cross-platform framework with the main goal of making it easier to do high-performance processing and visualization of medical images on heterogeneous systems utilizing both multi-core CPUs and GPUs. To achieve this, FAST use modern C++, OpenCL and OpenGL.

Datasets and pretrained Models for StyleGAN3 ... Dear arfiticial friend, this is a collection of artistic datasets and models that we have put togethe

Gretel Trainer This code is designed to help users successfully train synthetic models on complex datasets with high row and column counts. The code w

Multi-atlas segmentation (MAS) is a promising framework for medical image segmentation. Generally, MAS methods register multiple atlases, i.e., medical images with corresponding labels, to a target image;

A small python package that allows the user to look up common medical abbreviations.

ExORL: Exploratory Data for Offline Reinforcement Learning This is an original PyTorch implementation of the ExORL framework from Don't Change the Alg

pyrelational is a python active learning library developed by Relation Therapeutics for rapidly implementing active learning pipelines from data management, model development (and Bayesian approximation), to creating novel active learning strategies.

I³ Tracker for Essential Open Innovation Datasets This repository is set up to track, version, and contribute updates to the I³ Essential Open Innovat

Brainda Welcome! First and foremost, Welcome! Thank you for visiting the Brainda repository which was initially released at this repo and reorganized

PyZebrascope - an open-source Python platform for brain-wide neural activity imaging in behaving zebrafish

AD Datasets Complete* and curated list of autonomous driving related datasets Contributing Contributions are very welcome! To add or update a dataset:

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation By Qing Xu, Wenting Duan and Na He Requirements pytorch==1.1

Posterior temperature optimized Bayesian models for inverse problems in medical imaging Max-Heinrich Laves*, Malte Tölle*, Alexander Schlaefer, Sandy

TailCalibX : Feature Generation for Long-tail Classification by Rahul Vigneswaran, Marc T. Law, Vineeth N. Balasubramanian, Makarand Tapaswi [arXiv] [

SweiNet SweiNet is an uncertainty-quantifying shear wave speed (SWS) estimator for ultrasound shear wave elasticity (SWE) imaging. SweiNet takes as in

Awesome Pretrained StyleGAN2 A collection of pre-trained StyleGAN2 models trained on different datasets at different resolution. Note the readme is a

Awesome AI for Art & Design An awesome list of AI for art and design - resources, and popular datasets and how we may apply computer vision tasks to a

Deep High Dynamic Range Imaging Benchmark This repository is the pytorch impleme

Medical natural language parsing and utility library A natural language medical

List of Land Cover datasets in the GEE Catalog A list of all the Land Cover (or discrete) datasets in Google Earth Engine. Values, Colors and Descript

1st place solution in CCF BDCI 2021 ULSEG challenge This is the source code of the 1st place solution for ultrasound image angioma segmentation task (

Medical-Insurance-Project-OOP Python Classes: Medical Insurance Project using Object Oriented Programming Concepts Classes are an incredibly useful pr

YOLOv5 Auto Annotator Annotate datasets with a semi-trained or fully trained YOLOv5 model Prerequisites Ubuntu =20.04 Python =3.7 System dependencie

SegTransVAE: Hybrid CNN - Transformer with Regularization for medical image segmentation This repo is the official implementation for SegTransVAE. Seg

miseval: a metric library for Medical Image Segmentation EVALuation The open-source and free to use Python package miseval was developed to establish

coldcuts coldcuts is an R package that allows you to draw and plot automatically segmentations from 3D voxel arrays. The name is inspired by one of It

Ensemble Learning Priors Driven Deep Unfolding for Scalable Snapshot Compressive Imaging [PyTorch] Abstract Snapshot compressive imaging (SCI) can rec

An Analysis on Ensemble Learning optimized Medical Image Classification with Deep Convolutional Neural Networks Novel and high-performance medical ima

We provide a notebook that shows how to import the IITB English-Hindi Parallel Corpus from the HuggingFace datasets repository. The notebook also shows how to segment the corpus using BPE tokenization which can be used to train an English-Hindi MT System.

Semantic Segmentation Easy to use and customizable SOTA Semantic Segmentation models with abundant datasets in PyTorch Features Applicable to followin

Graviti Python SDK Graviti Python SDK is a python library to access Graviti Data

[Project] Equivariant Imaging: Learning Beyond the Range Space Project about the

Toward Model Interpretability in Medical NLP LING380: Topics in Computational Linguistics Final Project James Cross ([email protected]) and Daniel Kim

This repo supplements our Survey on Transformers in Medical Imaging Fahad Shamshad, Salman Khan, Syed Waqas Zamir, Muhammad Haris Khan, Munawar Hayat,

Introduction: X-Ray Report Generation This repository is for our EMNLP 2021 paper "Automated Generation of Accurate & Fluent Medical X-ray Reports". O

RATCHET: RAdiological Text Captioning for Human Examined Thoraxes RATCHET is a Medical Transformer for Chest X-ray Diagnosis and Reporting. Based on t

Accelerated Multi-Modal MR Imaging with Transformers Dependencies numpy==1.18.5 scikit_image==0.16.2 torchvision==0.8.1 torch==1.7.0 runstats==1.8.0 p

Is it Time to Replace CNNs with Transformers for Medical Images? Accepted at ICCV-2021: Workshop on Computer Vision for Automated Medical Diagnosis (C

MT-UNet Update 2022/01/05 By another round of training based on previous weights, our model also achieved a better performance on ACDC (91.61% DSC). W

LeViT_UNet For medical image segmentation Our model is based on LeViT (https://github.com/facebookresearch/LeViT). You'd better gitclone its codes. Th

TransFuse This repo holds the code of TransFuse: Fusing Transformers and CNNs for Medical Image Segmentation Requirements Pytorch=1.6.0, 1.9.0 (=1.

Introduction This repository contains the modified caffe library and network architectures for our paper "Automated Melanoma Recognition in Dermoscopy

Cascaded-FCN This repository contains the pre-trained models for a Cascaded-FCN in caffe and tensorflow that segments the liver and its lesions out of

Shield: This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. Deep Learning to Improve Breast

Medical Data for Machine Learning This is a curated list of medical data for machine learning. This list is provided for informational purposes only,

Awesome Satellite Imagery Datasets List of aerial and satellite imagery datasets with annotations for computer vision and deep learning. Newest datase

HistoSeg : Quick attention with multi-loss function for multi-structure segmentation in digital histology images Histological Image Segmentation This

SI_EXPLAINER_tg_bot This bot is an assistant for medical professionals in interpreting the results of patient clustering. ABOUT This chatbot was devel

An interactive App to play with Spotify data, both from the Spotify Web API and from CSV datasets.

All about AI with Cheat-Sheets(+100 Cheat-sheets), Free Online Books, Courses, Videos and Lectures, Papers, Tutorials, Researchers, Websites, Datasets

T‘rex Park is a Youzan sponsored project. Offering Chinese NLP and image models pretrained from E-commerce datasets (product titles, images, comments, etc.).

Th2En & Th2Zh: The large-scale datasets for Thai text cross-lingual summarization 📥 Download Datasets 📥 Download Trained Models INTRODUCTION TH2ZH (

MedViLL This repository provides the code for MedViLL(Medical Vision Language Learner). Our proposed architecture MedViLL is a single BERT-based model

UnifiedSKG 📚 : Unifying and Multi-Tasking Structured Knowledge Grounding with Text-to-Text Language Models Code for paper UnifiedSKG: Unifying and Mu

NeWT: Natural World Tasks This repository contains resources for working with the NeWT dataset. ❗ At this time the binary tasks are not publicly avail

The repository collects many various multi-modal transformer architectures, including image transformer, video transformer, image-language transformer, video-language transformer and related datasets. Additionally, it also collects many useful tutorials and tools in these related domains.

Few-Shot-Intent-Detection Few-Shot-Intent-Detection is a repository designed for few-shot intent detection with/without Out-of-Scope (OOS) intents. It

Tabular-AutoML AutoML Package for tabular datasets Tabular dataset tuning is now hassle free! Run one liner command and get best tuning and processed

NLP PubMed Medical Research Paper Abstract (Randomized Controlled Trial) A natural language processing model for sequential sentence classification in

Compartmental epidemic model to assess undocumented infections: applications to SARS-CoV-2 epidemics in Brazil - Datasets and Codes The codes for simu

On Sampling Collaborative Filtering Datasets This repository contains the implementation of many popular sampling strategies, along with various expli

🎮 Awesome Game Datasets In computer science, Artificial Intelligence (AI) is intelligence demonstrated by machines. Its definition, AI research as th

Pneumonia Detection from X-Rays Project Overview In this project, you will apply the skills that you have acquired in this 2D medical imaging course t

Patient Selection for Diabetes Drug Testing Project Overview EHR data is becoming a key source of real-world evidence (RWE) for the pharmaceutical ind

Quantifying Hippocampus Volume for Alzheimer's Progression Background Alzheimer's disease (AD) is a progressive neurodegenerative disorder that result

Cross-level Contrastive Learning and Consistency Constraint for Semi-supervised Medical Image Introduction This repository contains the PyTorch implem

MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.

Continual learning datasets Introduction This repository contains PyTorch image

Machine Learning use case in the field of Healthcare. In this project MONAI and pytorch frameworks are used for 3D Liver segmentation.

Introduction This is an implementation of our paper Supervised 3D Pre-training on Large-scale 2D Natural Image Datasets for 3D Medical Image Analysis.

ASL-Skeleton3D and ASL-Phono Datasets Generator The ASL-Skeleton3D contains a representation based on mapping into the three-dimensional space the coo

Repository for papers: Benchmark: Effect of Prior-based Losses on Segmentation Performance: A Benchmark Midl: A Surprisingly Effective Perimeter-based

HOW TO USE THIS PROJECT A Review of Deep Learning Techniques for Markerless Human Motion on Synthetic Datasets Based on DeepLabCut toolbox, we run wit

Pedestron Pedestron is a MMdetection based repository, that focuses on the advancement of research on pedestrian detection. We provide a list of detec