Python Multimodal-imaging Resources

Disclaimer This code is provided for research and development use only. This code is not intended for use in clinical decision-making or for any other

CoCa - Pytorch Implementation of CoCa, Contrastive Captioners are Image-Text Foundation Models, in Pytorch. They were able to elegantly fit in contras

Language Models Can See: Plugging Visual Controls in Text Generation Authors: Yixuan Su, Tian Lan, Yahui Liu, Fangyu Liu, Dani Yogatama, Yan Wang, Lin

jie jie is a spatial genome aligner. This package parses true chromatin imaging signal from noise by aligning signals to a reference DNA polymer model

Paper | Blog OFA is a unified multimodal pretrained model that unifies modalities (i.e., cross-modality, vision, language) and tasks (e.g., image gene

MAGMA -- Multimodal Augmentation of Generative Models through Adapter-based Finetuning Authors repo (alphabetical) Constantin (CoEich), Mayukh (Mayukh

TorchMultimodal (Alpha Release) Introduction TorchMultimodal is a PyTorch library for training state-of-the-art multimodal multi-task models at scale.

TubeDETR: Spatio-Temporal Video Grounding with Transformers Website • STVG Demo • Paper This repository provides the code for our paper. This includes

MCSE: Multimodal Contrastive Learning of Sentence Embeddings This repository contains code and pre-trained models for our NAACL-2022 paper MCSE: Multi

MKGFormer Code for the SIGIR 2022 paper "Hybrid Transformer with Multi-level Fusion for Multimodal Knowledge Graph Completion" Model Architecture Illu

MMChat This repo contains the code and data for the LREC2022 paper MMChat: Multi-Modal Chat Dataset on Social Media. Dataset MMChat is a large-scale d

A repository for the updated version of CoinRun used to collect MUGEN, a multimodal video-audio-text dataset. This repo contains scripts to train RL agents to navigate the closed world and collect video data.

Underwater Light Field Retention : Neural Rendering for Underwater Imaging (UWNR) (Accepted by CVPR Workshop2022 NTIRE) Authors: Tian Ye†, Sixiang Che

On-the-Fly Adaptation Official Pytorch Code base for On-the-Fly Test-time Adaptation for Medical Image Segmentation Paper Introduction One major probl

SWRM Code for Findings of ACL 2022 Paper "Sentiment Word Aware Multimodal Refinement for Multimodal Sentiment Analysis with ASR Errors" Clone Clone th

SiD - Simple Deep Model Vectorwise Interpretable Attentions for Multimodal Tabul

Official repository of OFA. Paper: Unifying Architectures, Tasks, and Modalities Through a Simple Sequence-to-Sequence Learning Framework

CZU-MHAD: A multimodal dataset for human action recognition utilizing a depth camera and 10 wearable inertial sensors   In order to facilitate the res

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

FAST is an open-source cross-platform framework with the main goal of making it easier to do high-performance processing and visualization of medical images on heterogeneous systems utilizing both multi-core CPUs and GPUs. To achieve this, FAST use modern C++, OpenCL and OpenGL.

PyZebrascope - an open-source Python platform for brain-wide neural activity imaging in behaving zebrafish

Posterior temperature optimized Bayesian models for inverse problems in medical imaging Max-Heinrich Laves*, Malte Tölle*, Alexander Schlaefer, Sandy

MinkLoc++: Lidar and Monocular Image Fusion for Place Recognition Paper: MinkLoc++: Lidar and Monocular Image Fusion for Place Recognition accepted fo

SweiNet SweiNet is an uncertainty-quantifying shear wave speed (SWS) estimator for ultrasound shear wave elasticity (SWE) imaging. SweiNet takes as in

Deep High Dynamic Range Imaging Benchmark This repository is the pytorch impleme

1st place solution in CCF BDCI 2021 ULSEG challenge This is the source code of the 1st place solution for ultrasound image angioma segmentation task (

ruCLIP-SB RuCLIP-SB (Russian Contrastive Language–Image Pretraining SWIN-BERT) is a multimodal model for obtaining images and text similarities and re

Code for Multimodal Neural SLAM for Interactive Instruction Following Code structure The code is adapted from E.T. and most training as well as data p

coldcuts coldcuts is an R package that allows you to draw and plot automatically segmentations from 3D voxel arrays. The name is inspired by one of It

Ensemble Learning Priors Driven Deep Unfolding for Scalable Snapshot Compressive Imaging [PyTorch] Abstract Snapshot compressive imaging (SCI) can rec

Official code of Team Yao at Multi-Modal-Fact-Verification-2022 A Multi-Modal Fact Verification dataset released as part of the De-Factify workshop in

Evidential Softmax for Sparse Multimodal Distributions in Deep Generative Models Abstract Many applications of generative models rely on the marginali

[Project] Equivariant Imaging: Learning Beyond the Range Space Project about the

This repo supplements our Survey on Transformers in Medical Imaging Fahad Shamshad, Salman Khan, Syed Waqas Zamir, Muhammad Haris Khan, Munawar Hayat,

Multimodal Co-Attention Transformer (MCAT) for Survival Prediction in Gigapixel Whole Slide Images [ICCV 2021] © Mahmood Lab - This code is made avail

Accelerated Multi-Modal MR Imaging with Transformers Dependencies numpy==1.18.5 scikit_image==0.16.2 torchvision==0.8.1 torch==1.7.0 runstats==1.8.0 p

MT-UNet Update 2022/01/05 By another round of training based on previous weights, our model also achieved a better performance on ACDC (91.61% DSC). W

Cascaded-FCN This repository contains the pre-trained models for a Cascaded-FCN in caffe and tensorflow that segments the liver and its lesions out of

Shield: This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. Deep Learning to Improve Breast

Multimodal Temporal Context Network (MTCN) This repository implements the model proposed in the paper: Evangelos Kazakos, Jaesung Huh, Arsha Nagrani,

mmTransformer Introduction This repo is official implementation for mmTransformer in pytorch. Currently, the core code of mmTransformer is implemented

Pneumonia Detection from X-Rays Project Overview In this project, you will apply the skills that you have acquired in this 2D medical imaging course t

Quantifying Hippocampus Volume for Alzheimer's Progression Background Alzheimer's disease (AD) is a progressive neurodegenerative disorder that result

MINOS Simulator MINOS is a simulator designed to support the development of multisensory models for goal-directed navigation in complex indoor environ

MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.

Machine Learning use case in the field of Healthcare. In this project MONAI and pytorch frameworks are used for 3D Liver segmentation.

MUGE Multimodal Retrieval Baseline This repo is implemented based on the open_cl

CrowdCurio Time Series Annotator Library The CrowdCurio Time Series Annotation Library implements classification tasks for time series. Features Suppo

#NeuralTalk Warning: Deprecated. Hi there, this code is now quite old and inefficient, and now deprecated. I am leaving it on Github for educational p

ehtim (eht-imaging) Python modules for simulating and manipulating VLBI data and producing images with regularized maximum likelihood methods. This ve

Auto Vaidya An open source solution for creating end-end web app for employing the power of deep learning in various clinical scenarios like implant d

LAVT: Language-Aware Vision Transformer for Referring Image Segmentation Where we are ? 12.27 目前和原论文仍有1%左右得差距，但已经力压很多SOTA了 ckpt__448_epoch_25.pth mIoU

pysero pysero enables serological measurements with multiplexed and standard ELISA assays. The project automates estimation of antibody titers from da

There is More than Meets the Eye: Self-Supervised Multi-Object Detection and Tracking with Sound by Distilling Multimodal Knowledge MM-DistillNet is a

tedana: TE Dependent ANAlysis TE-dependent analysis (tedana) is a Python library for denoising multi-echo functional magnetic resonance imaging (fMRI)

Overview BisQue is a web-based platform specifically designed to provide researchers with organizational and quantitative analysis tools for up to 5D

Logo by Zhuoning Yuan LibAUC: A Machine Learning Library for AUC Optimization Website | Updates | Installation | Tutorial | Research | Github LibAUC a

Keyhole Imaging Code & Dataset Code associated with the paper "Keyhole Imaging: Non-Line-of-Sight Imaging and Tracking of Moving Objects Along a Singl

Multimodal Trajectory Prediction Conditioned on Lane-Graph Traversals This repository contains code for "Multimodal trajectory prediction conditioned

MT-VAE for Multimodal Human Motion Synthesis This is the code for ECCV 2018 paper MT-VAE: Learning Motion Transformations to Generate Multimodal Human

NHDRRNet-PyTorch This is the PyTorch implementation of Deep HDR Imaging via A Non-Local Network (TIP 2020). 0. Differences between Original Paper and

MT-UNet Update 2021/11/19 Thank you for your interest in our work. We have uploaded the code of our MTUNet to help peers conduct further research on i

Hiring We are hiring at all levels (including FTE researchers and interns)! If you are interested in working with us on NLP and large-scale pre-traine

Read and write TIFF files Tifffile is a Python library to store numpy arrays in TIFF (Tagged Image File Format) files, and read image and metadata fro

AHDRNet-PyTorch This is the PyTorch implementation of Attention-guided Network for Ghost-free High Dynamic Range Imaging (CVPR 2019). The official cod

Larch: Data Analysis Tools for X-ray Spectroscopy and More Documentation: http://xraypy.github.io/xraylarch Code: http://github.com/xraypy/xraylarch L

Unimodal Face Classification with Multimodal Training This is a PyTorch implementation of the following paper: Unimodal Face Classification with Multi

Robust Place Recognition using an Imaging Lidar A place recognition package using high-resolution imaging lidar. For best performance, a lidar equippe

Conceptual 12M We introduce the Conceptual 12M (CC12M), a dataset with ~12 million image-text pairs meant to be used for vision-and-language pre-train

Simulation of moving particles under microscopic imaging Install scipy numpy scikit-image tiffile Run python simulation.py Read result https://imagej

UNITER-Based Situated Coreference Resolution with Rich Multimodal Input: arXiv MMCoref_cleaned Code for the MMCoref task of the SIMMC 2.0 dataset. Pre

U-Net Brain Tumor Segmentation 🚀 ：Feb 2019 the data processing implementation in this repo is not the fastest way (code need update, contribution is

Imaging Transcriptomics Imaging transcriptomics is a methodology that allows to identify patterns of correlation between gene expression and some prop

farabio is a minimal PyTorch toolkit for out-of-the-box deep learning support in biomedical imaging. For further information, see Wikis and Docs.

English|简体中文 ERNIE是百度开创性提出的基于知识增强的持续学习语义理解框架，该框架将大数据预训练与多源丰富知识相结合，通过持续学习技术，不断吸收海量文本数据中词汇、结构、语义等方面的知识，实现模型效果不断进化。ERNIE在累积 40 余个典型 NLP 任务取得 SOTA 效果，并在 G

Iconary This is the code for our paper "Iconary: A Pictionary-Based Game for Testing Multimodal Communication with Drawings and Text". It includes the

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

ContIG: Self-supervised Multimodal Contrastive Learning for Medical Imaging with Genetics This is the code implementation of the paper "ContIG: Self-s

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

Data Consistency for Magnetic Resonance Imaging Data Consistency (DC) is crucial for generalization in multi-modal MRI data and robustness in detectin

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

End-to-End Referring Video Object Segmentation with Multimodal Transformers This repo contains the official implementation of the paper: End-to-End Re

Few-shot Deep HDR Deghosting This repository contains code and pretrained models for our paper: Self-Gated Memory Recurrent Network for Efficient Scal

tsflex is a toolkit for flexible time series processing & feature extraction, that is efficient and makes few assumptions about sequence data. Useful

CodedCam Coded Illumination for Improved Lensless Imaging Paper | Supplementary results | Data and Code are available. Coded illumination for improved

MMDA - multimodal document analysis

The repository contains the implementations for Hyperspectral Image Classification -- Traditional to Deep Models: A Survey for Future Prospects. Model

Multimodal commodity image retrieval 多模态商品图像检索 Not finished yet... introduce explain:The specific description of the project and the product image dat

This repository contains the official implementation code of the paper Transformer-based Feature Reconstruction Network for Robust Multimodal Sentiment Analysis, accepted at ACMMM 2021.

fmi Adding additional functionality to fastai's medical imaging module To learn more about medical imaging using Fastai you can view my blog Install g

Fusion Brain Challenge The English version of the document can be found here. Обновления 01.11 Мы выкладываем пример данных, аналогичных private test

pyradiomics v3.0.1 Build Status Linux macOS Windows Radiomics feature extraction in Python This is an open-source python package for the extraction of

Medical Open Network for AI MONAI is a PyTorch-based, open-source framework for deep learning in healthcare imaging, part of PyTorch Ecosystem. Its am

Clinica Software platform for clinical neuroimaging studies Homepage | Documentation | Paper | Forum | See also: AD-ML, AD-DL ClinicaDL About The Proj

Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr

Effect of Deep Transfer and Multi task Learning on Sperm Abnormality Detection Introduction This repository includes codes and models of "Effect of De

ShallowSeismicImaging Tools to imaging the shallow seismic structure, above 10 km, based on the ZH ratio measured from the ambient seismic noise, and

BicycleGAN Project Page | Paper | Video Pytorch implementation for multimodal image-to-image translation. For example, given the same night image, our

AOS: Airborne Optical Sectioning Airborne Optical Sectioning (AOS) is a wide synthetic-aperture imaging technique that employs manned or unmanned airc

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i