Python Graph-optimization Resources

Solid is a Python framework for gradient-free optimization. It contains basic versions of many of the most common optimization algorithms that do not

Scikit-Optimize Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very) expensive and noisy black-box functions. It implements

SafeOpt - Safe Bayesian Optimization This code implements an adapted version of the safe, Bayesian optimization algorithm, SafeOpt [1], [2]. It also p

Bayesian Optimization Pure Python implementation of bayesian global optimization with gaussian processes. PyPI (pip): $ pip install bayesian-optimizat

hyperopt-sklearn Hyperopt-sklearn is Hyperopt-based model selection among machine learning algorithms in scikit-learn. See how to use hyperopt-sklearn

Hyperopt: Distributed Hyperparameter Optimization Hyperopt is a Python library for serial and parallel optimization over awkward search spaces, which

Optunity is a library containing various optimizers for hyperparameter tuning. Hyperparameter tuning is a recurrent problem in many machine learning t

SMAC v3 Project Copyright (C) 2016-2018 AutoML Group Attention: This package is a reimplementation of the original SMAC tool (see reference below). Ho

BoTorch is a library for Bayesian Optimization built on PyTorch. BoTorch is currently in beta and under active development! Why BoTorch ? BoTorch Prov

monkeys "If an army of monkeys were strumming on typewriters they might write all the books in the British Museum." monkeys is a framework designed to

skggm : Gaussian graphical models using the scikit-learn API In the last decade, learning networks that encode conditional independence relationships

Welcome to Spektral Spektral is a Python library for graph deep learning, based on the Keras API and TensorFlow 2. The main goal of this project is to

This project is now archived. It's been fun working on it, but it's time for me to move on. Thank you for all the support and feedback over the last c

Documentation | Paper | Colab Notebooks | External Resources | OGB Examples PyTorch Geometric (PyG) is a geometric deep learning extension library for

MLBox is a powerful Automated Machine Learning python library. It provides the following features: Fast reading and distributed data preprocessing/cle

auto-sklearn auto-sklearn is an automated machine learning toolkit and a drop-in replacement for a scikit-learn estimator. Find the documentation here

Master status: Development status: Package information: TPOT stands for Tree-based Pipeline Optimization Tool. Consider TPOT your Data Science Assista

Operating system Build Status Linux/Mac Windows tick tick is a Python 3 module for statistical learning, with a particular emphasis on time-dependent

Little Ball of Fur is a graph sampling extension library for Python. Please look at the Documentation, relevant Paper, Promo video and External Resour

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

[Due to the time taken @ uni, work + hell breaking loose in my life, since things have calmed down a bit, will continue commiting!!!] [By the way, I'm

Modular Active Learning framework for Python3 Page contents Introduction Active learning from bird's-eye view modAL in action From zero to one in a fe

Optimization for Oriented Object Detection via Representation Invariance Loss By Qi Ming, Zhiqiang Zhou, Lingjuan Miao, Xue Yang, and Yunpeng Dong. Th

EGNN - Pytorch Implementation of E(n)-Equivariant Graph Neural Networks, in Pytorch. May be eventually used for Alphafold2 replication. This

E(n)-Equivariant Transformer (wip) Implementation of E(n)-Equivariant Transformer, which extends the ideas from Welling's E(n)-Equivariant G

MazeRL is an application oriented Deep Reinforcement Learning (RL) framework, addressing real-world decision problems. Our vision is to cover the complete development life cycle of RL applications ranging from simulation engineering up to agent development, training and deployment.

libmaths was created not only as a learning experience for me, but as a way to make mathematical models in seconds for Python users using mat

Predicting Patient Outcomes with Graph Representation Learning This repository contains the code used for Predicting Patient Outcomes with Graph Repre

Notion Graph View Export Notion pages to a Roam Research like graph view.

A PyTorch implementation of "Pathfinder Discovery Networks for Neural Message Passing" (WebConf 2021). Abstract In this work we propose Pathfind

This is the official PyTorch implementation of our paper: "Joint Object Detection and Multi-Object Tracking with Graph Neural Networks". Our project website and video demos are here.

A command line stock market / portfolio tracker originally insipred by Ericm's Stonks program, featuring unicode for incredibly high detailed graphs even in a terminal.

Plots is a graph plotting app for GNOME. Plots makes it easy to visualise mathematical formulae. In addition to basic arithmetic operations, it supports trigonometric, hyperbolic, exponential and logarithmic functions, as well as arbitrary sums and products.Plots is designed to integrate well with the GNOME desktop and takes advantage of modern hardware using OpenGL, and currently supports OpenGL 3.3+.

PyTextRank PyTextRank is a Python implementation of TextRank as a spaCy pipeline extension, used to: extract the top-ranked phrases from text document

plotly.py Latest Release User forum PyPI Downloads License Data Science Workspaces Our recommended IDE for Plotly’s Python graphing library is Dash En

ec2-spot-converter This tool converts existing AWS EC2 instances back and forth between On-Demand and 'persistent' Spot billing models while preservin

This is a Pytorch implementation of the paper: Self-Supervised Graph Transformer on Large-Scale Molecular Data.

PyTextRank PyTextRank is a Python implementation of TextRank as a spaCy pipeline extension, used to: extract the top-ranked phrases from text document

plotly.py Latest Release User forum PyPI Downloads License Data Science Workspaces Our recommended IDE for Plotly’s Python graphing library is Dash En

Overview | Tutorials | Examples | Installation | FAQ | How to Cite Welcome to ktrain News and Announcements 2020-11-08: ktrain v0.25.x is released and

vprof vprof is a Python package providing rich and interactive visualizations for various Python program characteristics such as running time and memo

THE PROJECT IS ARCHIVED Forks: https://github.com/orsinium/forks DepHell -- project management for Python. Why it is better than all other tools: Form

This project is no longer maintained March 2020 Update: Please go see the amazing Pysa tutorial that should get you up to speed finding security vulne

Neo4j Bolt Driver for Python This repository contains the official Neo4j driver for Python. Each driver release (from 4.0 upwards) is built specifical

jsonpickle jsonpickle is a library for the two-way conversion of complex Python objects and JSON. jsonpickle builds upon the existing JSON encoders, s

OpenGraph is a module of python for parsing the Open Graph Protocol, you can read more about the specification at http://ogp.me/ Installation $ pip in

Django Facebook by Thierry Schellenbach (mellowmorning.com) Status Django and Facebook are both rapidly changing at the moment. Meanwhile, I'm caught

This is a simple graph database in SQLite, inspired by "SQLite as a document database".

Graph Transformer Architecture Source code for the paper "A Generalization of Transformer Networks to Graphs" by Vijay Prakash Dwivedi and Xavier Bres

UltraOpt : Distributed Asynchronous Hyperparameter Optimization better than HyperOpt. UltraOpt is a simple and efficient library to minimize expensive

Animating the Optimization Trajectory of Neural Nets loss-landscape-anim lets you create animated optimization path in a 2D slice of the loss landscap

🚀 Gated Graph Transformers Gated Graph Transformers for graph-level property prediction, i.e. graph classification and regression. Associated article

Adjacent Attention Network An implementation of a simple transformer that is equivalent to graph neural network where the message passing is done with

Context Matters: Graph-based Self-supervised Representation Learning for Medical Images Official PyTorch implementation for paper Context Matters: Gra

Facebook Python SDK This client library is designed to support the Facebook Graph API and the official Facebook JavaScript SDK, which is the canonical

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

Opytimizer: A Nature-Inspired Python Optimizer Welcome to Opytimizer. Did you ever reach a bottleneck in your computational experiments? Are you tired

Determined: Deep Learning Training Platform Determined is an open-source deep learning training platform that makes building models fast and easy. Det

MLJAR Automated Machine Learning Documentation: https://supervised.mljar.com/ Source Code: https://github.com/mljar/mljar-supervised Table of Contents

BayesO: A Bayesian optimization framework in Python Simple, but essential Bayesian optimization package. http://bayeso.org Online documentation Instal

Neuraxle Pipelines Code Machine Learning Pipelines - The Right Way. Neuraxle is a Machine Learning (ML) library for building machine learning pipeline

MiraiML Mirai: future in japanese. MiraiML is an asynchronous engine for continuous & autonomous machine learning, built for real-time usage. Usage In

StellarGraph Machine Learning Library StellarGraph is a Python library for machine learning on graphs and networks. Table of Contents Introduction Get

Modular Active Learning framework for Python3 Page contents Introduction Active learning from bird's-eye view modAL in action From zero to one in a fe

Xcessiv Xcessiv is a tool to help you create the biggest, craziest, and most excessive stacked ensembles you can think of. Stacked ensembles are simpl

Master status: Development status: Package information: TPOT stands for Tree-based Pipeline Optimization Tool. Consider TPOT your Data Science Assista

Spearmint Spearmint is a software package to perform Bayesian optimization. The Software is designed to automatically run experiments (thus the code n

auto_ml Automated machine learning for production and analytics Installation pip install auto_ml Getting started from auto_ml import Predictor from au

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

Little Ball of Fur is a graph sampling extension library for Python. Please look at the Documentation, relevant Paper, Promo video and External Resour

Documentation | External Resources | Datasets PyTorch Geometric Temporal is a temporal (dynamic) extension library for PyTorch Geometric. The library

scikit-opt Swarm Intelligence in Python (Genetic Algorithm, Particle Swarm Optimization, Simulated Annealing, Ant Colony Algorithm, Immune Algorithm,A

Ray provides a simple, universal API for building distributed applications. Ray is packaged with the following libraries for accelerating machine lear

vprof vprof is a Python package providing rich and interactive visualizations for various Python program characteristics such as running time and memo

Pythonic Data Structures and Algorithms Minimal and clean example implementations of data structures and algorithms in Python 3. Contributing Thanks f