Python Graph-optimization Resources

KFAC-JAX - Second Order Optimization with Approximate Curvature in JAX Installation | Quickstart | Documentation | Examples | Citing KFAC-JAX KFAC-JAX

LinkBERT: A Knowledgeable Language Model Pretrained with Document Links This repo provides the model, code & data of our paper: LinkBERT: Pretraining

NEW RELEASE How Nebullvm Works • Tutorials • Benchmarks • Installation • Get Started • Optimization Examples Discord | Website | LinkedIn | Twitter Ne

DeltaConv [Paper] [Project page] Code for the SIGGRAPH 2022 paper "DeltaConv: Anisotropic Operators for Geometric Deep Learning on Point Clouds" by Ru

Multi-Graph Fusion Networks for Urban Region Embedding (IJCAI-22) This is the implementation of Multi-Graph Fusion Networks for Urban Region Embedding

Drug Interaction Prediction with Tigerlily Documentation | Example Notebook | Youtube Video | Project Report Tigerlily is a TigerGraph based system de

Structured Sparse R-CNN for Direct Scene Graph Generation Our paper Structured Sparse R-CNN for Direct Scene Graph Generation has been accepted by CVP

PrimeKG Website | bioRxiv Paper | Harvard Dataverse Precision Medicine Knowledge Graph (PrimeKG) presents a holistic view of diseases. PrimeKG integra

Graph Stochastic Attention (GSAT) The official implementation of GSAT for our paper: Interpretable and Generalizable Graph Learning via Stochastic Att

SignLangGNN When GNNs 💜 MediaPipe. This is a starter project where I tried to implement some traditional image classification problem i.e. the ASL si

Intrusion-Detection-System-Using-CNN-and-Transfer-Learning This is the code for the paper entitled "A Transfer Learning and Optimized CNN Based Intrus

Description This repository contains code accompanying the following paper on the Make-It robotic flow chemistry platform developed by the Jensen Rese

GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation [OpenReview] [arXiv] [Code] The official implementation of GeoDiff: A Geome

Cooper About Cooper is a toolkit for Lagrangian-based constrained optimization in Pytorch. This library aims to encourage and facilitate the study of

CAKE ACL 2022: CAKE: A Scalable Commonsense-Aware Framework For Multi-View Knowledge Graph Completion Introduction This is the PyTorch implementation

30-Days-of-ML-Kaggle 🔥 About the Hands On Program 💻 Machine learning beginner → Kaggle competitor in 30 days. Non-coders welcome The program starts

Hugging Face Optimum 🤗 Optimum is an extension of 🤗 Transformers, providing a set of performance optimization tools enabling maximum efficiency to t

PyGOD is a Python library for graph outlier detection (anomaly detection). This exciting yet challenging field has many key applications, e.g., detect

PyGCL is a PyTorch-based open-source Graph Contrastive Learning (GCL) library, which features modularized GCL components from published papers, standa

OptiCL OptiCL is an end-to-end framework for mixed-integer optimization (MIO) with data-driven learned constraints. We address a problem setting in wh

AMRBART An implementation for ACL2022 paper "Graph Pre-training for AMR Parsing and Generation". You may find our paper here (Arxiv). Requirements pyt

MKGFormer Code for the SIGIR 2022 paper "Hybrid Transformer with Multi-level Fusion for Multimodal Knowledge Graph Completion" Model Architecture Illu

DeepGNN Overview DeepGNN is a framework for training machine learning models on large scale graph data. DeepGNN contains all the necessary features in

sne4onnx A very simple tool for situations where optimization with onnx-simplifier would exceed the Protocol Buffers upper file size limit of 2GB, or

Intention Adaptive Graph Neural Network (IAGNN) This is the official repository of paper Intention Adaptive Graph Neural Network for Category-Aware Se

Twingrind This project brings profiling to TwinCAT PLCs. The general idea of the implementation is as follows. Twingrind is a TwinCAT library that inc

Athena Portfolio optimization is the process of selecting the best portfolio (asset distribution), out of the set of all portfolios being considered,

Diversifying Commonsense Reasoning Generation on Knowledge Graph Introduction -- This is the pytorch implementation of our ACL 2022 paper "Diversifyin

SDM - Lab 1 @ UPC 👨🏻‍💻 Table of contents Introduction Property Graph Dataset 1. Introduction This repo is all about what we have done in SDM lab 1

EasyMCDM - Quick Installation methods Install with PyPI Once you have created your Python environment (Python 3.6+) you can simply type: pip3 install

Black-Box-Defense This repository contains the code and models necessary to replicate the results of our recent paper: How to Robustify Black-Box ML M

On Size-Oriented Long-Tailed Graph Classification of Graph Neural Networks We provide the code (in PyTorch) and datasets for our paper "On Size-Orient

Black-Box-Defense This repository contains the code and models necessary to replicate the results of our recent paper: How to Robustify Black-Box ML M

Multi-view graph embedding clustering network: Joint self-supervision and block diagonal representation Simple implementation of our paper MVGC. The d

Commit Bot Automatically generate GitHub activity! We've all wanted to be the developer that commits every day, but that requires a lot of work. Let's

autolfads-tf2 A TensorFlow 2.0 implementation of LFADS and AutoLFADS. Installati

SGMC: Spectral Graph Matrix Completion Code for AAAI21 paper "Scalable and Explainable 1-Bit Matrix Completion via Graph Signal Learning". Data Format

GraphLily: A Graph Linear Algebra Overlay on HBM-Equipped FPGAs GraphLily is the first FPGA overlay for graph processing. GraphLily supports a rich se

B2EA: An Evolutionary Algorithm Assisted by Two Bayesian Optimization Modules for Neural Architecture Search This is the offical implementation of the

Graph Data Science: an abstraction layer in Python for building knowledge graphs, integrated with popular graph libraries – atop Pandas, RDFlib, pySHACL, RAPIDS, NetworkX, iGraph, PyVis, pslpython, pyarrow, etc.

TGIN Tensorflow implementation of our method: "Triangle Graph Interest Network for Click-through Rate Prediction". Files in the folder dataset/ electr

MarkovGNN This is the official PyTorch-Geometric implementation of MarkovGNN paper under the title "MarkovGNN: Graph Neural Networks on Markov Diffusi

TorchMD-net TorchMD-Net provides state-of-the-art graph neural networks and equivariant transformer neural networks potentials for learning molecular

OMLT is a Python package for representing machine learning models (neural networks and gradient-boosted trees) within the Pyomo optimization environment.

AutoLGBM LightGBM + Optuna: no brainer auto train lightgbm directly from CSV files auto tune lightgbm using optuna auto serve best lightgbm model usin

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

Code for CCA-SSG model proposed in the NeurIPS 2021 paper From Canonical Correlation Analysis to Self-supervised Graph Neural Networks.

Awesome AutoDL A curated list of automated deep learning related resources. Inspired by awesome-deep-vision, awesome-adversarial-machine-learning, awe

The project has set itself the goal of analyzing the thoughts and interaction of Italian users through the social posts expressed through the Twitter platform on the day of the entry into force of the new measures. In particular, we want to research the reference hubs present on the network, but also the sentiment and emotions of peoples with respect to the new limitations.

Nonlinear Optimization Algorithms During my time as Scientific Assistant at the Karlsruhe Institute of Technology (Germany) I implemented various Opti

Large-scale Knowledge Graph Construction with Prompting across tasks (predictive and generative), and modalities (language, image, vision + language, etc.)

FIRA is a learning-based commit message generation approach, which first represents code changes via fine-grained graphs and then learns to generate commit messages automatically.

BoxPlotGraphAutomation Automatization of BoxPlot graph usin Python / Excel. This file is an automation of BoxPlot-Graph using python graph library mat

A Graph Learning library for Humans These novel algorithms include but are not limited to: A graph construction and graph searching class can be found

HAIS_2GNN: 3D Visual Grounding with Graph and Attention This repository is for the HAIS_2GNN research project. Tao Gu, Yue Chen Introduction The motiv

MOEA-HH An open-source hyper-heuristic framework for multi-objective optimization. Introduction The multi-objective optimization technique is widely u

A tool to get a minimalist view of any architecture This tool has only be tested with the models included in this repo. Therefore, I can't guarantee t

This is the repository for codes for ML, domain generation, graph generation of Asymmetric Buckling Columns (ABC) dataset in the paper "Learning Mechanically Driven Emergent Behavior with Message Passing Neural Networks".

Graph Coloring - Weighted Vertex Coloring Problem This project proposes several local searches and an MCTS algorithm for the weighted vertex coloring

Code Impementation for "Mold into a Graph: Efficient Bayesian Optimization over Mixed Spaces" This repo contains the implementation of GEBO algorithm.

Graph Convolution Simulator (GCS) Source code for "Understanding Knowledge Integration in Language Models with Graph Convolutions" Requirements: PyTor

Fliscopt FLIght SCheduling OPTimization 🛫 or fliscopt is a simple optimization library for flight scheduling and related problems in the discrete dom

ES_OTN_Public Carlos Güemes Palau, Paul Almasan, Pere Barlet Ros, Albert Cabellos Aparicio Contact us: [email protected], contactus@bn

Python-AmongUsProblem Project in which we modelise an Among Us problem using graph theories. The rules are as following: Total of 100 players 10 playe

TGraM Multi-Object Tracking in Satellite Videos with Graph-Based Multi-Task Modeling, Qibin He, Xian Sun, Zhiyuan Yan, Beibei Li, Kun Fu Abstract Rece

Current gate-based quantum computers have the potential to provide a computational advantage if algorithms use quantum hardware efficiently.

Crypto Portfolio Clustering Crypto Portfolio Clustering with and without optimization techniques (elbow method, PCA). Analysis This is an anlysis of c

Expense Tracker is a very good tool to keep track of your expenseditures and the total money you saved.

LabGraph is a a Python-first framework used to build sophisticated research systems with real-time streaming, graph API, and parallelism.

Automating reinforcement learning architecture design for code optimization. Che

QVC Optimizer Review Code for the paper "An Empirical Review of Optimization Techniques for Quantum Variational Circuits". Each of the python files ca

Iterative refinement graph neural network for antibody sequence-structure co-des

RRT-Algorithm-Visualisation This is a project that aims to develop upon the RRT

GraphNLI: A Graph-based Natural Language Inference Model for Polarity Prediction in Online Debates Vibhor Agarwal, Sagar Joglekar, Anthony P. Young an

Tutorial on Amortized Optimization This repository contains the source code for the paper Tutorial on amortized optimization for learning to optimize

Equivariant Subgraph Aggregation Networks (ESAN) This repository contains the official code of the paper Equivariant Subgraph Aggregation Networks (IC

Hatchet Hatchet is a Python-based library that allows Pandas dataframes to be indexed by structured tree and graph data. It is intended for analyzing

DIR-GNN "Discovering Invariant Rationales for Graph Neural Networks" (ICLR 2022)

Live Demo (currently not running, on it) Espial is an engine for automated organization and discovery in knowledge bases. It can be adapted to run wit

TorchGRL TorchGRL is the source code for our paper Graph Convolution-Based Deep Reinforcement Learning for Multi-Agent Decision-Making in Mixed Traffi

LINUX-AOS (Automatic Optimization System)

GNN_PPI Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction". Lear

machine-learning-with-graphs My solutions for Stanford University course CS224W: Machine Learning with Graphs Fall 2021 colabs Course materials can be

An implementation of the Fibonacci method for gradient descent, featuring a TKinter GUI for inputting the function / parameters to be examined and a matplotlib plot of the function and results.

Bayesian Modeling and Uncertainty Quantification for Learning to Optimize: What, Why, and How TensorFlow implementation for Bayesian Modeling and Unce

GenGNN: A Generic FPGA Framework for Graph Neural Network Acceleration Stefan Abi-Karam*, Yuqi He*, Rishov Sarkar*, Lakshmi Sathidevi, Zihang Qiao, Co

Approximate Multiplier by HEAM What's HEAM? HEAM is a general optimization method to generate high-efficiency approximate multipliers for specific app

OntoProtein This is the implement of the paper "OntoProtein: Protein Pretraining With Ontology Embedding". OntoProtein is an effective method that mak

ReLSO Improved Fitness Optimization Landscapes for Sequence Design Description Citation How to run Training models Original data source Description In

On Evaluation Metrics for Graph Generative Models Authors: Rylee Thompson, Boris Knyazev, Elahe Ghalebi, Jungtaek Kim, Graham Taylor This is the offic

GNDC For submission to IEEE TKDE. Overview Here we provide the implementation of GND-Nets (Graph Neural Diffusion Networks) in TensorFlow. The reposit

Author Name Disambiguation with Knowledge Graph Embeddings using Literals This is the repository for the master thesis project on Knowledge Graph Embe

AI for TSP Competition Goal In the AI for TSP competition we try to solve optimization problems using machine learning. The competition will be hosted

Born-Infeld (BI) for AI: Energy-Conserving Descent (ECD) for Optimization This repository contains the code for the BBI optimizer, introduced in the p

shap-hypetune A python package for simultaneous Hyperparameters Tuning and Features Selection for Gradient Boosting Models. Overview Hyperparameters t

GreaseLM: Graph REASoning Enhanced Language Models This repo provides the source code & data of our paper "GreaseLM: Graph REASoning Enhanced Language

TGRNet: A Table Graph Reconstruction Network for Table Structure Recognition Xue, Wenyuan, et al. "TGRNet: A Table Graph Reconstruction Network for Ta

STAR_KGC This repo contains the source code of the paper accepted by WWW'2021. "Structure-Augmented Text Representation Learning for Efficient Knowled

CSKG: The CommonSense Knowledge Graph CSKG is a commonsense knowledge graph that combines seven popular sources into a consolidated representation: AT

Graph Analysis From Scratch Goal In this notebook we wanted to implement some functionalities to analyze a weighted graph only by using algorithms imp