8 Repositories
Python nanopore Libraries
Snakemake worflow to process and filter long read data from Oxford Nanopore Technologies.
Nanopore-Workflow Snakemake workflow to process and filter long read data from Oxford Nanopore Technologies. It is designed to compare whole human gen
5 May 13, 2022
Find Transposon Element insertions using long reads (nanopore), by alignment directly. (minimap2)
find_te_ins find_te_ins is designed to find Transposon Element (TE) insertions using long reads (nanopore), by alignment directly. (minimap2) Install
1 Feb 9, 2022
ONT Analysis Toolkit (OAT)
A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.
6 Jun 14, 2022
Methylation/modified base calling separated from basecalling.
Remora Methylation/modified base calling separated from basecalling. Remora primarily provides an API to call modified bases for basecaller programs s
72 Jan 5, 2023
MHtyper is an end-to-end pipeline for recognized the Forensic microhaplotypes in Nanopore sequencing data.
MHtyper is an end-to-end pipeline for recognized the Forensic microhaplotypes in Nanopore sequencing data. It is implemented using Python.
6 Jun 27, 2022
A pipeline that creates consensus sequences from a Nanopore reads. I
A pipeline that creates consensus sequences from a Nanopore reads. It clusters reads that are similar to each other and creates a consensus that is then identified using BLAST.
2 May 15, 2022
Stitch together Nanopore tiled amplicon data without polishing a reference
Stitch together Nanopore tiled amplicon data using a reference guided approach Tiled amplicon data, like those produced from primers designed with pri
14 Aug 30, 2022
A modular single-molecule analysis interface
MOSAIC: A modular single-molecule analysis interface MOSAIC is a single molecule analysis toolbox that automatically decodes multi-state nanopore data
35 Dec 13, 2022