Python Napari-cistem Resources

napari-error-monitor Want to help out napari? Install this plugin! This plugin will automatically send error reports to napari (via sentry.io) wheneve

napari-sklearn-decomposition A simple plugin to use with napari This napari plug

napari-math This package provides a GUI interfrace for simple mathematical operations on image, point and surface layers. addition subtraction multipl

napari-pymeshlab Interfaces between napari and the pymeshlab library to allow import, export and construction of surfaces. This is a WIP and feature r

napari-yolov5 Plugin adapted from Ultralytics to bring YOLOv5 into Napari. Training and detection can be done using the GUI. Training dataset must be

napari-3d-ortho-viewer Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images This napari plugin was generated with Cookiecutter using @nap

napari-apr-viewer A simple plugin to view APR images in napari This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-

napari-labelimg4classification A simple image-level annotation tool supporting multi-channel images for napari. This napari plugin was generated with

napari-simpleitk-image-processing (n-SimpleITK) Process images using SimpleITK in napari Usage Filters of this napari plugin can be found in the Tools

iterseg napari plugin for iteratively improving unet-watershed segmentation This napari plugin was generated with Cookiecutter using @napari's cookiec

napari-time-slicer A meta plugin for processing timelapse data timepoint by timepoint. It enables a list of napari plugins to process 2D+t or 3D+t dat

napari-threedee A suite of useful tools based on 3D interactivity in napari This napari plugin was generated with Cookiecutter using @napari's cookiec

napari-demo-data Sample data for the napari image viewer. This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugi

napari-cistem A plugin to inspect data within a cisTEM project This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-na

napari-script-editor A python script editor for napari based on PyQode. This napari plugin was generated with Cookiecutter using with @napari's cookie

napari-subboxer A napari plugin for visualising and interacting with electron cryotomograms. Installation You can install napari-subboxer via pip: pip

napari-text-layer Napari text layer for bio-image annotation. Installation You can install using pip: pip install napari-text-layer Keybindings and m

pcnaDeep-napari A customized interface for single cell track visualisation based on pcnaDeep and napari. 👀 Under construction You can get test image

napari-tomoslice A napari plugin for visualising and interacting with electron cryotomograms. Installation You can install napari-tomoslice via pip: p

napari-cupy-image-processing GPU-accelerated image processing using cupy and CUDA This napari plugin was generated with Cookiecutter using with @napar

napari-imaris-loader Napari plugin for loading Bitplane Imaris files '.ims'. Notes: For this plugin to work "File/Preferences/Experimental/Render Imag

napari-crop Crop regions in napari manually Usage Create a new shapes layer to annotate the region you would like to crop: Use the rectangle tool to a

impy is All You Need in Image Analysis impy is an all-in-one image analysis library, equipped with parallel processing, GPU support, GUI based tools a

Napari scripts A collection of napari related tools in various state of disrepair/functionality. Browse_LIF_widget.py This module can be imported, for