15 Repositories
Python rna Libraries
MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-seq data
MarcoPolo is a method to discover differentially expressed genes in single-cell RNA-seq data without depending on prior clustering Overview MarcoPolo
13 Dec 18, 2022
scAR (single-cell Ambient Remover) is a package for data denoising in single-cell omics.
scAR scAR (single cell Ambient Remover) is a package for denoising multiple single cell omics data. It can be used for multiple tasks, such as, sgRNA
19 Nov 28, 2022
nextPARS, a novel Illumina-based implementation of in-vitro parallel probing of RNA structures.
nextPARS, a novel Illumina-based implementation of in-vitro parallel probing of RNA structures. Here you will find the scripts necessary to produce th
0 Jan 20, 2022
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in
917 Jan 3, 2023
A Parameter-free Deep Embedded Clustering Method for Single-cell RNA-seq Data
A Parameter-free Deep Embedded Clustering Method for Single-cell RNA-seq Data Overview Clustering analysis is widely utilized in single-cell RNA-seque
3 May 8, 2022
ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
ScisorWiz: Vizualizer for Differential Isoform Expression README ScisorWiz is a linux-based R-package for visualizing differential isoform expression
6 Oct 4, 2022
A Protein-RNA Interface Predictor Based on Semantics of Sequences
PRIP PRIP：A Protein-RNA Interface Predictor Based on Semantics of Sequences installation gensim==3.8.3 matplotlib==3.1.3 xgboost==1.3.3 prettytable==2
0 Mar 25, 2022
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Scripts for "Current best-practices in single-cell RNA-seq: a tutorial" This repository is complementary to the publication: M.D. Luecken, F.J. Theis,
968 Dec 28, 2022
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
English | 简体中文 Latest News 2021.10.25 Paper "Docking-based Virtual Screening with Multi-Task Learning" is accepted by BIBM 2021. 2021.07.29 PaddleHeli
633 Jan 4, 2023
AptaMat is a simple script which aims to measure differences between DNA or RNA secondary structures.
AptaMAT Purpose AptaMat is a simple script which aims to measure differences between DNA or RNA secondary structures. The method is based on the compa
3 Nov 3, 2022
Bioinformatics tool for exploring RNA-Protein interactions
Explore RNA-Protein interactions. RNPFind is a bioinformatics tool. It takes an RNA transcript as input and gives a list of RNA binding protein (RBP)
3 Jan 27, 2022
ToeholdTools is a Python package and desktop app designed to facilitate analyzing and designing toehold switches, created as part of the 2021 iGEM competition.
ToeholdTools Category Status Repository Package Build Quality A library for the analysis of toehold switch riboregulators created by the iGEM team Cit
0 Dec 1, 2021
Biomarker identification for COVID-19 Severity in BALF cells Single-cell RNA-seq data
scBALF Covid-19 dataset Analysis Here is the Github page that has the codes for the bioinformatics pipeline described in the paper COVID-Datathon: Bio
2 May 21, 2022
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in
915 Dec 29, 2022
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in
917 Jan 3, 2023