4 Repositories
Python transcriptomics Libraries
A package, and script, to perform imaging transcriptomics on a neuroimaging scan.
Imaging Transcriptomics Imaging transcriptomics is a methodology that allows to identify patterns of correlation between gene expression and some prop
10 Dec 27, 2022
Single-Cell Analysis in Python. Scales to 1M cells.
Scanpy – Single-Cell Analysis in Python Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It inc
1.4k Jan 5, 2023
starfish is a Python library for processing images of image-based spatial transcriptomics.
starfish: scalable pipelines for image-based transcriptomics starfish is a Python library for processing images of image-based spatial transcriptomics
199 Dec 8, 2022
An interactive explorer for single-cell transcriptomics data
an interactive explorer for single-cell transcriptomics data cellxgene (pronounced "cell-by-gene") is an interactive data explorer for single-cell tra
424 Dec 15, 2022