Scikit-Garden or skgarden is a garden for Scikit-Learn compatible decision trees and forests.

Last update: Dec 21, 2022

Related tags

Machine Learning python machine-learning tree forest scientific-computing scikit-learn-api

Overview

Scikit-Garden

Scikit-Garden or skgarden (pronounced as skarden) is a garden for Scikit-Learn compatible decision trees and forests.

Weights at different depths of a MondrianTree

Ordered prediction intervals on the Boston dataset.

Installation

Scikit-Garden depends on NumPy, SciPy, Scikit-Learn and Cython. So make sure these dependencies are installed using pip:

pip3 install setuptools numpy scipy scikit-learn cython

After that Scikit-Garden can be installed using pip.

pip install scikit-garden

Available models

Regressors

MondrianForestRegressor
ExtraTreesRegressor (with return_std support)
ExtraTreesQuantileRegressor
RandomForestRegressor (with return_std support)
RandomForestQuantileRegressor

Classifiers

MondrianForestClassifier

Usage

The estimators in Scikit-Garden are Scikit-Learn compatible and can serve as a drop-in replacement for Scikit-Learn's trees and forests.

from sklearn.datasets import load_boston
X, y = load_boston()

### Use MondrianForests for variance estimation
from skgarden import MondrianForestRegressor
mfr = MondrianForestRegressor()
mfr.fit(X, y)
y_mean, y_std = mfr.predict(X, return_std=True)

### Use QuantileForests for quantile estimation
from skgarden import RandomForestQuantileRegressor
rfqr = RandomForestQuantileRegressor(random_state=0)
rfqr.fit(X, y)
y_mean = rfqr.predict(X)
y_median = rfqr.predict(X, 50)

Important links

API Reference: https://scikit-garden.github.io/api/
Examples: https://scikit-garden.github.io/examples/

Comments

Build failure when installing as dependency

Below an extremely long log output of a failure when trying to install scikit-optimize from master without first installing scikit-garden or cython in a fresh python3.6 conda environment. Not sure I really understand why it fails, or what went wrong.

$ pip install https://github.com/scikit-optimize/scikit-optimize/archive/master.zip
Collecting https://github.com/scikit-optimize/scikit-optimize/archive/master.zip
  Downloading https://github.com/scikit-optimize/scikit-optimize/archive/master.zip (1.4MB)
    100% |████████████████████████████████| 1.4MB 790kB/s 
Requirement already satisfied: numpy in ./anaconda/envs/robot-phys/lib/python3.6/site-packages (from scikit-optimize==0.3)
Requirement already satisfied: scipy in ./anaconda/envs/robot-phys/lib/python3.6/site-packages (from scikit-optimize==0.3)
Requirement already satisfied: scikit-learn>=0.18 in ./anaconda/envs/robot-phys/lib/python3.6/site-packages (from scikit-optimize==0.3)
Collecting scikit-garden (from scikit-optimize==0.3)
  Using cached scikit-garden-0.1.2.tar.gz
    Complete output from command python setup.py egg_info:
    Unable to find pgen, not compiling formal grammar.
    warning: no files found matching '*.pyx' under directory 'Cython/Debugger/Tests'
    warning: no files found matching '*.pxd' under directory 'Cython/Debugger/Tests'
    warning: no files found matching '*.h' under directory 'Cython/Debugger/Tests'
    warning: no files found matching '*.pxd' under directory 'Cython/Utility'
    /tmp/easy_install-vnba_vee/Cython-0.25.2/Cython/Compiler/FlowControl.c: In function ‘__Pyx_PyInt_LshiftObjC’:
    /tmp/easy_install-vnba_vee/Cython-0.25.2/Cython/Compiler/FlowControl.c:39765:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                     if (unlikely(!(b < sizeof(long)*8 && a == x >> b)) && a) {
                                      ^
    /tmp/easy_install-vnba_vee/Cython-0.25.2/Cython/Compiler/FlowControl.c:608:43: note: in definition of macro ‘unlikely’
       #define unlikely(x) __builtin_expect(!!(x), 0)
                                               ^
    
    Installed /tmp/pip-build-kugr7f0w/scikit-garden/.eggs/Cython-0.25.2-py3.6-linux-x86_64.egg
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    
    import numpy as np
    cimport numpy as np
    np.import_array()
    
    from ._utils cimport log
    ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:29:0: 'skgarden/mondrian/tree/_utils.pxd' not found
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    
    import numpy as np
    cimport numpy as np
    np.import_array()
    
    from ._utils cimport log
    ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:29:0: 'skgarden/mondrian/tree/_utils/log.pxd' not found
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    import numpy as np
    cimport numpy as np
    np.import_array()
    
    from ._utils cimport log
    from ._utils cimport safe_realloc
    ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:30:0: 'skgarden/mondrian/tree/_utils/safe_realloc.pxd' not found
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    cimport numpy as np
    np.import_array()
    
    from ._utils cimport log
    from ._utils cimport safe_realloc
    from ._utils cimport sizet_ptr_to_ndarray
    ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:31:0: 'skgarden/mondrian/tree/_utils/sizet_ptr_to_ndarray.pxd' not found
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
            return {}
    
        def __setstate__(self, d):
            pass
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                           ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:54:24: 'DOUBLE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
            return {}
    
        def __setstate__(self, d):
            pass
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                                        ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:54:37: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
            return {}
    
        def __setstate__(self, d):
            pass
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                                                         ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:54:54: 'DOUBLE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    
        def __setstate__(self, d):
            pass
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                      double weighted_n_samples, SIZE_t* samples, SIZE_t start,
                                                ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:55:45: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    
        def __setstate__(self, d):
            pass
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                      double weighted_n_samples, SIZE_t* samples, SIZE_t start,
                                                                 ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:55:62: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
        def __setstate__(self, d):
            pass
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                      double weighted_n_samples, SIZE_t* samples, SIZE_t start,
                      SIZE_t end) nogil except -1:
                     ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:56:18: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    
            This method must be implemented by the subclass.
            """
            pass
    
        cdef int update(self, SIZE_t new_pos) nogil except -1:
                             ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:100:26: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
                = (\sum_i^n y_i ** 2) - n_samples * y_bar ** 2
        """
    
        cdef double sq_sum_total
    
        def __cinit__(self, SIZE_t n_outputs, SIZE_t n_samples):
                           ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:226:24: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
                = (\sum_i^n y_i ** 2) - n_samples * y_bar ** 2
        """
    
        cdef double sq_sum_total
    
        def __cinit__(self, SIZE_t n_outputs, SIZE_t n_samples):
                                             ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:226:42: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
                raise MemoryError()
    
        def __reduce__(self):
            return (type(self), (self.n_outputs, self.n_samples), self.__getstate__())
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                           ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:276:24: 'DOUBLE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
                raise MemoryError()
    
        def __reduce__(self):
            return (type(self), (self.n_outputs, self.n_samples), self.__getstate__())
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                                        ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:276:37: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
                raise MemoryError()
    
        def __reduce__(self):
            return (type(self), (self.n_outputs, self.n_samples), self.__getstate__())
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                                                         ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:276:54: 'DOUBLE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    
        def __reduce__(self):
            return (type(self), (self.n_outputs, self.n_samples), self.__getstate__())
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                      double weighted_n_samples, SIZE_t* samples, SIZE_t start,
                                                ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:277:45: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    
        def __reduce__(self):
            return (type(self), (self.n_outputs, self.n_samples), self.__getstate__())
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                      double weighted_n_samples, SIZE_t* samples, SIZE_t start,
                                                                 ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:277:62: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
        def __reduce__(self):
            return (type(self), (self.n_outputs, self.n_samples), self.__getstate__())
    
        cdef int init(self, DOUBLE_t* y, SIZE_t y_stride, DOUBLE_t* sample_weight,
                      double weighted_n_samples, SIZE_t* samples, SIZE_t start,
                      SIZE_t end) nogil except -1:
                     ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:278:18: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
            self.weighted_n_right = 0.0
            self.weighted_n_left = self.weighted_n_node_samples
            self.pos = self.end
            return 0
    
        cdef int update(self, SIZE_t new_pos) nogil except -1:
                             ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:342:26: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    
    
    cdef class ClassificationCriterion(Criterion):
        """Abstract criterion for classification."""
    
        cdef SIZE_t* n_classes
            ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:517:9: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    
    cdef class ClassificationCriterion(Criterion):
        """Abstract criterion for classification."""
    
        cdef SIZE_t* n_classes
        cdef SIZE_t sum_stride
            ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:518:9: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
        """Abstract criterion for classification."""
    
        cdef SIZE_t* n_classes
        cdef SIZE_t sum_stride
    
        def __cinit__(self, SIZE_t n_outputs,
                           ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:520:24: 'SIZE_t' is not a type identifier
    
    Error compiling Cython file:
    ------------------------------------------------------------
    ...
    
        cdef SIZE_t* n_classes
        cdef SIZE_t sum_stride
    
        def __cinit__(self, SIZE_t n_outputs,
                      np.ndarray[SIZE_t, ndim=1] n_classes):
                                      ^
    ------------------------------------------------------------
    
    skgarden/mondrian/tree/_criterion.pyx:521:35: Invalid type.
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-build-kugr7f0w/scikit-garden/setup.py", line 61, in <module>
        setup_requires=["cython"])
      File "/home/thead/anaconda/envs/robot-phys/lib/python3.6/site-packages/numpy/distutils/core.py", line 135, in setup
        config = configuration()
      File "/tmp/pip-build-kugr7f0w/scikit-garden/setup.py", line 25, in configuration
        config.add_subpackage('skgarden')
      File "/home/thead/anaconda/envs/robot-phys/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 1001, in add_subpackage
        caller_level = 2)
      File "/home/thead/anaconda/envs/robot-phys/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 970, in get_subpackage
        caller_level = caller_level + 1)
      File "/home/thead/anaconda/envs/robot-phys/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 907, in _get_configuration_from_setup_py
        config = setup_module.configuration(*args)
      File "skgarden/setup.py", line 9, in configuration
        config.add_subpackage("mondrian")
      File "/home/thead/anaconda/envs/robot-phys/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 1001, in add_subpackage
        caller_level = 2)
      File "/home/thead/anaconda/envs/robot-phys/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 970, in get_subpackage
        caller_level = caller_level + 1)
      File "/home/thead/anaconda/envs/robot-phys/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 907, in _get_configuration_from_setup_py
        config = setup_module.configuration(*args)
      File "skgarden/mondrian/setup.py", line 25, in configuration
        config.ext_modules = cythonize(config.ext_modules)
      File "/tmp/pip-build-kugr7f0w/scikit-garden/.eggs/Cython-0.25.2-py3.6-linux-x86_64.egg/Cython/Build/Dependencies.py", line 934, in cythonize
        cythonize_one(*args)
      File "/tmp/pip-build-kugr7f0w/scikit-garden/.eggs/Cython-0.25.2-py3.6-linux-x86_64.egg/Cython/Build/Dependencies.py", line 1056, in cythonize_one
        raise CompileError(None, pyx_file)
    Cython.Compiler.Errors.CompileError: skgarden/mondrian/tree/_criterion.pyx
    Appending skgarden.mondrian.tree configuration to skgarden.mondrian
    Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.tree')
    Appending skgarden.mondrian.ensemble configuration to skgarden.mondrian
    Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.ensemble')
    skgarden/mondrian/tree/_tree.pyx: cannot find cimported module '._utils'
    skgarden/mondrian/tree/_splitter.pyx: cannot find cimported module '._utils'
    skgarden/mondrian/tree/_splitter.pyx: cannot find cimported module '._criterion'
    skgarden/mondrian/tree/_criterion.pyx: cannot find cimported module '._utils'
    Compiling skgarden/mondrian/tree/_tree.pyx because it depends on /tmp/pip-build-kugr7f0w/scikit-garden/.eggs/Cython-0.25.2-py3.6-linux-x86_64.egg/Cython/Includes/cpython/method.pxd.
    Compiling skgarden/mondrian/tree/_splitter.pyx because it depends on /tmp/pip-build-kugr7f0w/scikit-garden/.eggs/Cython-0.25.2-py3.6-linux-x86_64.egg/Cython/Includes/cpython/buffer.pxd.
    Compiling skgarden/mondrian/tree/_criterion.pyx because it depends on /tmp/pip-build-kugr7f0w/scikit-garden/.eggs/Cython-0.25.2-py3.6-linux-x86_64.egg/Cython/Includes/cpython/buffer.pxd.
    Compiling skgarden/mondrian/tree/_utils.pyx because it depends on /tmp/pip-build-kugr7f0w/scikit-garden/.eggs/Cython-0.25.2-py3.6-linux-x86_64.egg/Cython/Includes/cpython/buffer.pxd.
    [1/4] Cythonizing skgarden/mondrian/tree/_criterion.pyx
    
    ----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-kugr7f0w/scikit-garden/

opened by betatim 10

Allow source install without build deps preinstall
This solves the issue where installing scikit-garden in an empty virtualenv does not work.

Adds numpy as setup requirements, and requires Cython only when running the build_ext, where Cython is needed. This pushes the Cython requirement to a point in the install where setuptools has had time to install Cython as a build requirement.

Replaces #77 which forgot to cythonize extensions.

With this PR, I can do this without errors:

# git clone https://github.com/ecederstrand/scikit-garden.git # cd scikit-garden # git checkout patch-1 python3 -m venv tmp source tmp/bin/activate python3 -m pip install wheel python3 setup.py build_ext bdist_wheel

Also added support for scikit-learn master branch, to satisfy test suite.
opened by ecederstrand 9
Remove children impurity calculation

The criterion is initialized at every call to node_reset which is sufficient to calculate the statistics of every node. This removes the impurity calculation of the left and right children which is unnecessary for a MondrainSplitter.

opened by MechCoder 5
error of import MondrianForestRegressor

Hello, I have succeeded to install scikit-garden, but when I tried to "import" :

from skgarden import MondrianForestRegressor

There was always an error : ModuleNotFoundError: No module named 'skgarden.mondrian.tree._criterion'

I didn't understand this error, so, can you please help me?

opened by vatn 4
Dependency fix
Updated the imports to their current versions. Specifically:

sklearn.externals.joblib is replaced with joblib

sklearn.utils.testing is replaced with numpy.testing

sklearn.externals.six is replaced with six

sklearn.tree.tree is replaced with sklearn.tree

presort parameter removed from calls to DecisionTreeRegressor

Replaced occurences of assert_true, assert_false, assert_greater and assert_less with their equivalent assert statements

As ForestClassifier and ForestRegressor can't be imported from sklearn anymore, the source code for these are now placed in forest.py

All unit tests in tests/, mondrian/tree/tests/, mondrian/ensemble/tests and quantile/tests run with no errors.
opened by saattrupdan 3

Setting min sample leaf for Quantile Regression Forest on Boston dataset

Hi,

I was playing around with the example Boston Data set and noticed if you change the parameter min_samples_leaf != 1, then the x_weights do not look like they are working properly and I run into the following error:

  File "playaround.py", line 23, in <module>
    upper = np.concatenate((upper, rfqr.predict(X_test, quantile=98.5)))
  File "C:\Users\jchen\AppData\Local\Continuum\Anaconda2\lib\site-packages\skgarden\quantile\ensemble.py", line 143, in predict
    self.y_train_, quantile, weights, sorter)
  File "C:\Users\jchen\AppData\Local\Continuum\Anaconda2\lib\site-packages\skgarden\quantile\utils.py", line 69, in weighted_percentile
    total = sorted_cum_weights[-1]
IndexError: index -1 is out of bounds for axis 0 with size 0

Here is the sample Boston Dataset Code:

import matplotlib.pyplot as plt
import numpy as np
from sklearn.datasets import load_boston
from sklearn.model_selection import train_test_split
from sklearn.model_selection import KFold
from skgarden import RandomForestQuantileRegressor


boston = load_boston()
X, y = boston.data, boston.target
kf = KFold(n_splits=5, random_state=0)
rfqr = RandomForestQuantileRegressor(random_state=0, min_samples_split=10, n_estimators=1000,min_samples_leaf=3)

y_true_all = []
lower = []
upper = []

for train_index, test_index in kf.split(X):
	X_train, X_test, y_train, y_test = (X[train_index], X[test_index], y[train_index], y[test_index])
	rfqr.set_params(max_features=X_train.shape[1] // 3)
	rfqr.fit(X_train, y_train)
	y_true_all = np.concatenate((y_true_all, y_test))
	upper = np.concatenate((upper, rfqr.predict(X_test, quantile=98.5)))
	lower = np.concatenate((lower, rfqr.predict(X_test, quantile=2.5)))

interval = upper - lower
sort_ind = np.argsort(interval)
y_true_all = y_true_all[sort_ind]
upper = upper[sort_ind]
lower = lower[sort_ind]
mean = (upper + lower) / 2


# Center such that the mean of the prediction interval is at 0.0
y_true_all -= mean
upper -= mean
lower -= mean

plt.plot(y_true_all, "ro")
plt.fill_between(
    np.arange(len(upper)), lower, upper, alpha=0.2, color="r",
    label="Pred. interval")
plt.xlabel("Ordered samples.")
plt.ylabel("Values and prediction intervals.")
plt.xlim([0, 500])
plt.show()

Maybe I do not understand Quantile Regression Forests and the implementation is only suppose to have min_samples_leaf = 1, but that seems to contradict min_samples_split = 10 in the Boston Data Set example. Any help would be appreciated, thanks!

opened by jeffyangchen 3

setup failure on Windows: path cannot be absolute

For example, here: https://ci.appveyor.com/project/conda-forge/staged-recipes/build/1.0.16558/job/k1u8dc61iq2n4pmk#L493

I don't have a Windows machine, but when I build locally on Linux/Mac, my scikit_garden.egg-info/SOURCES.txt includes absolute paths to numpy/core/include/numpy/{array,ufunc}object.h. This then breaks inside distutils.util.convert_path, which is a no-op on Linux/Mac but says that paths can't be absolute on Windows.

I think this is probably related to something about the recursive build setup using numpy.distutils (e.g. #23), but I'm not totally sure.

opened by djsutherland 3
Troubleshooting Installation

Hi,

I tried installing using pip install scikit-garden and ran into the following error message:

pip install scikit-garden Collecting scikit-garden Using cached scikit-garden-0.1.3.tar.gz Requirement already satisfied: numpy in c:\users\jchen\appdata\local\continuum\anaconda2\lib\site-packages (from scikit-garden) Requirement already satisfied: scipy in c:\users\jchen\appdata\local\continuum\anaconda2\lib\site-packages (from scikit-garden) Requirement already satisfied: scikit-learn>=0.18 in c:\users\jchen\appdata\local\continuum\anaconda2\lib\site-packages (from scikit-garden) Requirement already satisfied: cython in c:\users\jchen\appdata\local\continuum\anaconda2\lib\site-packages (from scikit-garden) Building wheels for collected packages: scikit-garden Running setup.py bdist_wheel for scikit-garden ... error Complete output from command C:\Users\jchen\AppData\Local\Continuum\Anaconda2\python.exe -u -c "import setuptools, tokenize;file='c:\users\jchen\appdata\local\temp\pip-build-6becp0\scikit-garden\setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" bdist_wheel -d c:\users\jchen\appdata\local\temp\tmpmvmkfopip-wheel- --python-tag cp27: Appending skgarden.mondrian.tree configuration to skgarden.mondrian Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.tree') Appending skgarden.mondrian.ensemble configuration to skgarden.mondrian Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.ensemble') Appending skgarden.mondrian configuration to skgarden Ignoring attempt to set 'name' (from 'skgarden' to 'skgarden.mondrian') Appending skgarden.quantile configuration to skgarden Ignoring attempt to set 'name' (from 'skgarden' to 'skgarden.quantile') Appending skgarden configuration to Ignoring attempt to set 'name' (from '' to 'skgarden') running bdist_wheel running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "skgarden.mondrian.tree.tree" sources building extension "skgarden.mondrian.tree.splitter" sources building extension "skgarden.mondrian.tree.criterion" sources building extension "skgarden.mondrian.tree.utils" sources build_src: building npy-pkg config files running build_py creating build creating build\lib.win-amd64-2.7 creating build\lib.win-amd64-2.7\skgarden copying skgarden\forest.py -> build\lib.win-amd64-2.7\skgarden copying skgarden\setup.py -> build\lib.win-amd64-2.7\skgarden copying skgarden_init.py -> build\lib.win-amd64-2.7\skgarden creating build\lib.win-amd64-2.7\skgarden\mondrian copying skgarden\mondrian\setup.py -> build\lib.win-amd64-2.7\skgarden\mondrian copying skgarden\mondrian_init.py -> build\lib.win-amd64-2.7\skgarden\mondrian creating build\lib.win-amd64-2.7\skgarden\quantile copying skgarden\quantile\ensemble.py -> build\lib.win-amd64-2.7\skgarden\quantile copying skgarden\quantile\setup.py -> build\lib.win-amd64-2.7\skgarden\quantile copying skgarden\quantile\tree.py -> build\lib.win-amd64-2.7\skgarden\quantile copying skgarden\quantile\utils.py -> build\lib.win-amd64-2.7\skgarden\quantile copying skgarden\quantile_init.py -> build\lib.win-amd64-2.7\skgarden\quantile creating build\lib.win-amd64-2.7\skgarden\mondrian\ensemble copying skgarden\mondrian\ensemble\forest.py -> build\lib.win-amd64-2.7\skgarden\mondrian\ensemble copying skgarden\mondrian\ensemble\setup.py -> build\lib.win-amd64-2.7\skgarden\mondrian\ensemble copying skgarden\mondrian\ensemble_init.py -> build\lib.win-amd64-2.7\skgarden\mondrian\ensemble creating build\lib.win-amd64-2.7\skgarden\mondrian\tree copying skgarden\mondrian\tree\setup.py -> build\lib.win-amd64-2.7\skgarden\mondrian\tree copying skgarden\mondrian\tree\tree.py -> build\lib.win-amd64-2.7\skgarden\mondrian\tree copying skgarden\mondrian\tree_init_.py -> build\lib.win-amd64-2.7\skgarden\mondrian\tree running build_ext customize MSVCCompiler customize MSVCCompiler using build_ext building 'skgarden.mondrian.tree._tree' extension compiling C sources creating build\temp.win-amd64-2.7 creating build\temp.win-amd64-2.7\Release creating build\temp.win-amd64-2.7\Release\skgarden creating build\temp.win-amd64-2.7\Release\skgarden\mondrian creating build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree C:\Users\jchen\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -IC:\Users\jchen\AppData\Local\Continuum\Anaconda2\lib\site-packages\numpy\core\include -IC:\Users\jchen\AppData\Local\Continuum\Anaconda2\lib\site-packages\numpy\core\include -IC:\Users\jchen\AppData\Local\Continuum\Anaconda2\include -IC:\Users\jchen\AppData\Local\Continuum\Anaconda2\PC /Tcskgarden\mondrian\tree_tree.c /Fobuild\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.obj -O3 Found executable C:\Users\jchen\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe

C:\Users\jchen\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\link.exe /DLL /nologo /INCREMENTAL:NO /LIBPATH:C:\Users\jchen\AppData\Local\Continuum\Anaconda2\libs /LIBPATH:C:\Users\jchen\AppData\Local\Continuum\Anaconda2\PCbuild\amd64 /LIBPATH:C:\Users\jchen\AppData\Local\Continuum\Anaconda2\PC\VS9.0\amd64 /EXPORT:init_tree build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.obj /OUT:build\lib.win-amd64-2.7\skgarden\mondrian\tree_tree.pyd /IMPLIB:build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.lib /MANIFESTFILE:build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.pyd.manifest Found executable C:\Users\jchen\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\link.exe _tree.obj : warning LNK4197: export 'init_tree' specified multiple times; using first specification Creating library build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.lib and object build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.exp _tree.obj : error LNK2019: unresolved external symbol fmax referenced in function __pyx_f_8skgarden_8mondrian_4tree_5_tree_4Tree_predict build\lib.win-amd64-2.7\skgarden\mondrian\tree_tree.pyd : fatal error LNK1120: 1 unresolved externals error: Command "C:\Users\jchen\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\link.exe /DLL /nologo /INCREMENTAL:NO /LIBPATH:C:\Users\jchen\AppData\Local\Continuum\Anaconda2\libs /LIBPATH:C:\Users\jchen\AppData\Local\Continuum\Anaconda2\PCbuild\amd64 /LIBPATH:C:\Users\jchen\AppData\Local\Continuum\Anaconda2\PC\VS9.0\amd64 /EXPORT:init_tree build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.obj /OUT:build\lib.win-amd64-2.7\skgarden\mondrian\tree_tree.pyd /IMPLIB:build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.lib /MANIFESTFILE:build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.pyd.manifest" failed with exit status 1120

Failed building wheel for scikit-garden Running setup.py clean for scikit-garden Failed to build scikit-garden Installing collected packages: scikit-garden Running setup.py install for scikit-garden ... error Complete output from command C:\Users\jchen\AppData\Local\Continuum\Anaconda2\python.exe -u -c "import setuptools, tokenize;file='c:\users\jchen\appdata\local\temp\pip-build-6becp0\scikit-garden\setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record c:\users\jchen\appdata\local\temp\pip-xcrp8b-record\install-record.txt --single-version-externally-managed --compile: Appending skgarden.mondrian.tree configuration to skgarden.mondrian Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.tree') Appending skgarden.mondrian.ensemble configuration to skgarden.mondrian Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.ensemble') Appending skgarden.mondrian configuration to skgarden Ignoring attempt to set 'name' (from 'skgarden' to 'skgarden.mondrian') Appending skgarden.quantile configuration to skgarden Ignoring attempt to set 'name' (from 'skgarden' to 'skgarden.quantile') Appending skgarden configuration to Ignoring attempt to set 'name' (from '' to 'skgarden') running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "skgarden.mondrian.tree.tree" sources building extension "skgarden.mondrian.tree.splitter" sources building extension "skgarden.mondrian.tree.criterion" sources building extension "skgarden.mondrian.tree.utils" sources build_src: building npy-pkg config files running build_py creating build creating build\lib.win-amd64-2.7 creating build\lib.win-amd64-2.7\skgarden copying skgarden\forest.py -> build\lib.win-amd64-2.7\skgarden copying skgarden\setup.py -> build\lib.win-amd64-2.7\skgarden copying skgarden_init.py -> build\lib.win-amd64-2.7\skgarden creating build\lib.win-amd64-2.7\skgarden\mondrian copying skgarden\mondrian\setup.py -> build\lib.win-amd64-2.7\skgarden\mondrian copying skgarden\mondrian_init.py -> build\lib.win-amd64-2.7\skgarden\mondrian creating build\lib.win-amd64-2.7\skgarden\quantile copying skgarden\quantile\ensemble.py -> build\lib.win-amd64-2.7\skgarden\quantile copying skgarden\quantile\setup.py -> build\lib.win-amd64-2.7\skgarden\quantile copying skgarden\quantile\tree.py -> build\lib.win-amd64-2.7\skgarden\quantile copying skgarden\quantile\utils.py -> build\lib.win-amd64-2.7\skgarden\quantile copying skgarden\quantile_init.py -> build\lib.win-amd64-2.7\skgarden\quantile creating build\lib.win-amd64-2.7\skgarden\mondrian\ensemble copying skgarden\mondrian\ensemble\forest.py -> build\lib.win-amd64-2.7\skgarden\mondrian\ensemble copying skgarden\mondrian\ensemble\setup.py -> build\lib.win-amd64-2.7\skgarden\mondrian\ensemble copying skgarden\mondrian\ensemble_init.py -> build\lib.win-amd64-2.7\skgarden\mondrian\ensemble creating build\lib.win-amd64-2.7\skgarden\mondrian\tree copying skgarden\mondrian\tree\setup.py -> build\lib.win-amd64-2.7\skgarden\mondrian\tree copying skgarden\mondrian\tree\tree.py -> build\lib.win-amd64-2.7\skgarden\mondrian\tree copying skgarden\mondrian\tree_init_.py -> build\lib.win-amd64-2.7\skgarden\mondrian\tree running build_ext customize MSVCCompiler customize MSVCCompiler using build_ext building 'skgarden.mondrian.tree._tree' extension compiling C sources creating build\temp.win-amd64-2.7 creating build\temp.win-amd64-2.7\Release creating build\temp.win-amd64-2.7\Release\skgarden creating build\temp.win-amd64-2.7\Release\skgarden\mondrian creating build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree C:\Users\jchen\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS- /DNDEBUG -IC:\Users\jchen\AppData\Local\Continuum\Anaconda2\lib\site-packages\numpy\core\include -IC:\Users\jchen\AppData\Local\Continuum\Anaconda2\lib\site-packages\numpy\core\include -IC:\Users\jchen\AppData\Local\Continuum\Anaconda2\include -IC:\Users\jchen\AppData\Local\Continuum\Anaconda2\PC /Tcskgarden\mondrian\tree_tree.c /Fobuild\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.obj -O3 Found executable C:\Users\jchen\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe C:\Users\jchen\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\link.exe /DLL /nologo /INCREMENTAL:NO /LIBPATH:C:\Users\jchen\AppData\Local\Continuum\Anaconda2\libs /LIBPATH:C:\Users\jchen\AppData\Local\Continuum\Anaconda2\PCbuild\amd64 /LIBPATH:C:\Users\jchen\AppData\Local\Continuum\Anaconda2\PC\VS9.0\amd64 /EXPORT:init_tree build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.obj /OUT:build\lib.win-amd64-2.7\skgarden\mondrian\tree_tree.pyd /IMPLIB:build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.lib /MANIFESTFILE:build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.pyd.manifest Found executable C:\Users\jchen\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\link.exe _tree.obj : warning LNK4197: export 'init_tree' specified multiple times; using first specification Creating library build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.lib and object build\temp.win-amd64-2.7\Release\skgarden\mondrian\tree_tree.exp

Looks like there is something wrong with Visual C++ for python. Any help would be greatly appreciated. Thanks!

opened by jeffyangchen 3

Unable to install through pip

pip installation doesn't recognize already installed numpy.

Collecting scikit-garden
  Downloading scikit-garden-0.1.3.tar.gz (317 kB)
     |████████████████████████████████| 317 kB 78.6 MB/s            
  Preparing metadata (setup.py) ... - error
  ERROR: Command errored out with exit status 1:
   command: /home/circleci/project/venv/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-xf6kw9yr/scikit-garden_2d8007f33a52439ab401c4ec290abf09/setup.py'"'"'; __file__='"'"'/tmp/pip-install-xf6kw9yr/scikit-garden_2d8007f33a52439ab401c4ec290abf09/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-92p854xv
       cwd: /tmp/pip-install-xf6kw9yr/scikit-garden_2d8007f33a52439ab401c4ec290abf09/
  Complete output (5 lines):
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "/tmp/pip-install-xf6kw9yr/scikit-garden_2d8007f33a52439ab401c4ec290abf09/setup.py", line 6, in <module>
      import numpy
  ModuleNotFoundError: No module named 'numpy'
  ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/63/0f/850592f6e8619d42086cdcc6a1731a4254f74db09878a155ab3d4cdc55ef/scikit-garden-0.1.3.tar.gz#sha256=d6fe65205f39633f17c181f552a0fc56e2f05bb2096be63f38c160fe20718d9d (from https://pypi.org/simple/scikit-garden/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
  Downloading scikit-garden-0.1.2.tar.gz (313 kB)
     |████████████████████████████████| 313 kB 83.0 MB/s            
  Preparing metadata (setup.py) ... - error
  ERROR: Command errored out with exit status 1:
   command: /home/circleci/project/venv/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-xf6kw9yr/scikit-garden_806822fed9e24f09a5555aebd9c5be89/setup.py'"'"'; __file__='"'"'/tmp/pip-install-xf6kw9yr/scikit-garden_806822fed9e24f09a5555aebd9c5be89/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-qu8tg4u8
       cwd: /tmp/pip-install-xf6kw9yr/scikit-garden_806822fed9e24f09a5555aebd9c5be89/
  Complete output (5 lines):
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "/tmp/pip-install-xf6kw9yr/scikit-garden_806822fed9e24f09a5555aebd9c5be89/setup.py", line 6, in <module>
      import numpy
  ModuleNotFoundError: No module named 'numpy'
  ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/e8/f7/38a1107426e7a9b0a2bc1a35f5325a674b5e2a804d8e67f6a20846bcb85c/scikit-garden-0.1.2.tar.gz#sha256=1ac32c80e33bcb65aa02696e98c005e5bea51acef6b012ce4153a3e9b5838ec9 (from https://pypi.org/simple/scikit-garden/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
  Downloading scikit-garden-0.1.1.tar.gz (317 kB)
     |████████████████████████████████| 317 kB 96.8 MB/s            
  Preparing metadata (setup.py) ... - error
  ERROR: Command errored out with exit status 1:
   command: /home/circleci/project/venv/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-xf6kw9yr/scikit-garden_c3cf1275d496488fbbdb2a926248c87a/setup.py'"'"'; __file__='"'"'/tmp/pip-install-xf6kw9yr/scikit-garden_c3cf1275d496488fbbdb2a926248c87a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-3ixzhpoe
       cwd: /tmp/pip-install-xf6kw9yr/scikit-garden_c3cf1275d496488fbbdb2a926248c87a/
  Complete output (5 lines):
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "/tmp/pip-install-xf6kw9yr/scikit-garden_c3cf1275d496488fbbdb2a926248c87a/setup.py", line 6, in <module>
      import numpy
  ModuleNotFoundError: No module named 'numpy'
  ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/e2/ed/00a1029cc08c7abcd75ece54dce1b1df3bed7544b507a2512199d5c7fba4/scikit-garden-0.1.1.tar.gz#sha256=6d5c7749c39a62b19eb5b8335ea7594412d7bb37a287272363855158c6ccb2b9 (from https://pypi.org/simple/scikit-garden/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
  Downloading scikit-garden-0.1.tar.gz (299 kB)
     |████████████████████████████████| 299 kB 82.6 MB/s            
  Preparing metadata (setup.py) ... - error
  ERROR: Command errored out with exit status 1:
   command: /home/circleci/project/venv/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-xf6kw9yr/scikit-garden_d39a62ffa5e340919b139872e4b8046a/setup.py'"'"'; __file__='"'"'/tmp/pip-install-xf6kw9yr/scikit-garden_d39a62ffa5e340919b139872e4b8046a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-csnck_bh
       cwd: /tmp/pip-install-xf6kw9yr/scikit-garden_d39a62ffa5e340919b139872e4b8046a/
  Complete output (5 lines):
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "/tmp/pip-install-xf6kw9yr/scikit-garden_d39a62ffa5e340919b139872e4b8046a/setup.py", line 6, in <module>
      import numpy
  ModuleNotFoundError: No module named 'numpy'
  ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/28/aa/b58d5bcd024b9b7f9737ab319c4da248154d33611e1b4167274e5f942028/scikit-garden-0.1.tar.gz#sha256=29218a2fb7687c897b2dc65032265eb7c95b267b26e1d2a40c3b29477bb326a5 (from https://pypi.org/simple/scikit-garden/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
ERROR: Could not find a version that satisfies the requirement scikit-garden (from versions: 0.1, 0.1.1, 0.1.2, 0.1.3)
ERROR: No matching distribution found for scikit-garden

Exited with code exit status 1
CircleCI received exit code 1

opened by PSSF23 2

Importing scikit-garden in requirements.txt

I want to pre-install scikit-garden vai a requirements.txt To make it future proof I would like to import it with a version such as: numpy==1.13.3 How can I do this for scikit-garden?

When installing I get the following error: ImportError: ('No module named Cython', 'Please install cython with a version >= 0.23 in order to build a scikit-garden development version.')

opened by paulVelthuisBoskabouter 2
Distribute the generated .c files on PyPI

distributing cython modules outlines a nice way to distribute the .c files via PyPI and removes the need for the user to install cython. I think they even recommend doing this.

One caveat: not sure how much of this is true if you build manylinux wheels (#19)?

opened by betatim 2
Planing to Push the latest release on PyPi?

Great project! I would like to use the partial_fit method of MondrianForest but it shows an error Mondrian Forest has no attribute partial_fit. I found that the version downloaded using pip do not contain the implementation of partial_fit. So Do you guys plan to push the latest release on Pypi?

opened by humanlee1011 0
Stalled development

Dear all,

development for this package seems to have stalled for years now, but there is still an interest from the community in the use of quantile machine learning methods in the sklearn world. I have been working on this (see PR #95 and scikit-learn/scikit-learn#19754) for a while now and have posted what I have in its own repo: https://github.com/jasperroebroek/sklearn-quantile. I do not have much knowledge on how to take this project further than where it is now (missing CI, pip, conda etc.) so help and feedback are more than welcome.

I am not sure if this is a suitable place to post a comment like this, so if it not I can of course delete it again.

Cheers, Jasper

opened by jasperroebroek 3

unable to install skgarden

Hi, I am using windows 10 and I was trying to install scikit garden. I already installed the dependencies using:

pip3 install setuptools numpy scipy scikit-learn cython

Next I tried to install scikit garden using anaconda prompt:

pip install scikit-garden

But I get the following error:

Collecting scikit-garden
  Using cached scikit-garden-0.1.3.tar.gz (317 kB)
Requirement already satisfied: numpy in c:\users\joean\anaconda3\lib\site-packages (from scikit-garden) (1.19.5)
Requirement already satisfied: scipy in c:\users\joean\anaconda3\lib\site-packages (from scikit-garden) (1.5.2)
Requirement already satisfied: scikit-learn>=0.18 in c:\users\joean\anaconda3\lib\site-packages (from scikit-garden) (0.23.2)
Requirement already satisfied: cython in c:\users\joean\anaconda3\lib\site-packages (from scikit-garden) (0.29.17)
Requirement already satisfied: threadpoolctl>=2.0.0 in c:\users\joean\anaconda3\lib\site-packages (from scikit-learn>=0.18->scikit-garden) (2.1.0)
Requirement already satisfied: joblib>=0.11 in c:\users\joean\anaconda3\lib\site-packages (from scikit-learn>=0.18->scikit-garden) (0.17.0)
Building wheels for collected packages: scikit-garden
  Building wheel for scikit-garden (setup.py): started
  Building wheel for scikit-garden (setup.py): finished with status 'error'
  Running setup.py clean for scikit-garden
Failed to build scikit-garden
Installing collected packages: scikit-garden
    Running setup.py install for scikit-garden: started
    Running setup.py install for scikit-garden: finished with status 'error'
  ERROR: Command errored out with exit status 1:
   command: 'C:\Users\joean\anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\joean\\AppData\\Local\\Temp\\pip-install-grpxsp24\\scikit-garden\\setup.py'"'"'; __file__='"'"'C:\\Users\\joean\\AppData\\Local\\Temp\\pip-install-grpxsp24\\scikit-garden\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d 'C:\Users\joean\AppData\Local\Temp\pip-wheel-qukechnm'
       cwd: C:\Users\joean\AppData\Local\Temp\pip-install-grpxsp24\scikit-garden\
  Complete output (236 lines):
  Appending skgarden.mondrian.tree configuration to skgarden.mondrian
  Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.tree')
  Appending skgarden.mondrian.ensemble configuration to skgarden.mondrian
  Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.ensemble')
  Appending skgarden.mondrian configuration to skgarden
  Ignoring attempt to set 'name' (from 'skgarden' to 'skgarden.mondrian')
  Appending skgarden.quantile configuration to skgarden
  Ignoring attempt to set 'name' (from 'skgarden' to 'skgarden.quantile')
  Appending skgarden configuration to
  Ignoring attempt to set 'name' (from '' to 'skgarden')
  running bdist_wheel
  running build
  running config_cc
  unifing config_cc, config, build_clib, build_ext, build commands --compiler options
  running config_fc
  unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
  running build_src
  build_src
  building extension "skgarden.mondrian.tree._tree" sources
  building extension "skgarden.mondrian.tree._splitter" sources
  building extension "skgarden.mondrian.tree._criterion" sources
  building extension "skgarden.mondrian.tree._utils" sources
  build_src: building npy-pkg config files
  running build_py
  creating build
  creating build\lib.win-amd64-3.8
  creating build\lib.win-amd64-3.8\skgarden
  copying skgarden\forest.py -> build\lib.win-amd64-3.8\skgarden
  copying skgarden\setup.py -> build\lib.win-amd64-3.8\skgarden
  copying skgarden\__init__.py -> build\lib.win-amd64-3.8\skgarden
  creating build\lib.win-amd64-3.8\skgarden\mondrian
  copying skgarden\mondrian\setup.py -> build\lib.win-amd64-3.8\skgarden\mondrian
  copying skgarden\mondrian\__init__.py -> build\lib.win-amd64-3.8\skgarden\mondrian
  creating build\lib.win-amd64-3.8\skgarden\quantile
  copying skgarden\quantile\ensemble.py -> build\lib.win-amd64-3.8\skgarden\quantile
  copying skgarden\quantile\setup.py -> build\lib.win-amd64-3.8\skgarden\quantile
  copying skgarden\quantile\tree.py -> build\lib.win-amd64-3.8\skgarden\quantile
  copying skgarden\quantile\utils.py -> build\lib.win-amd64-3.8\skgarden\quantile
  copying skgarden\quantile\__init__.py -> build\lib.win-amd64-3.8\skgarden\quantile
  creating build\lib.win-amd64-3.8\skgarden\mondrian\ensemble
  copying skgarden\mondrian\ensemble\forest.py -> build\lib.win-amd64-3.8\skgarden\mondrian\ensemble
  copying skgarden\mondrian\ensemble\setup.py -> build\lib.win-amd64-3.8\skgarden\mondrian\ensemble
  copying skgarden\mondrian\ensemble\__init__.py -> build\lib.win-amd64-3.8\skgarden\mondrian\ensemble
  creating build\lib.win-amd64-3.8\skgarden\mondrian\tree
  copying skgarden\mondrian\tree\setup.py -> build\lib.win-amd64-3.8\skgarden\mondrian\tree
  copying skgarden\mondrian\tree\tree.py -> build\lib.win-amd64-3.8\skgarden\mondrian\tree
  copying skgarden\mondrian\tree\__init__.py -> build\lib.win-amd64-3.8\skgarden\mondrian\tree
  running build_ext
  customize Mingw32CCompiler
  customize Mingw32CCompiler using build_ext
  building 'skgarden.mondrian.tree._tree' extension
  compiling C sources
  C compiler: gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes
  
  creating build\temp.win-amd64-3.8\Release\skgarden
  creating build\temp.win-amd64-3.8\Release\skgarden\mondrian
  creating build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree
  compile options: '-D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c'
  extra options: '-O3'
  gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c skgarden\mondrian\tree\_tree.c -o build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_tree.o -O3
  In file included from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarraytypes.h:1822:0,
                   from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarrayobject.h:12,
                   from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/arrayobject.h:4,
                   from skgarden\mondrian\tree\_tree.c:620:
  C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h:14:9: note: #pragma message: C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
   #pragma message(_WARN___LOC__"Using deprecated NumPy API, disable it with " \
           ^
  skgarden\mondrian\tree\_tree.c: In function '__pyx_f_8skgarden_8mondrian_4tree_5_tree_4Tree__get_node_ndarray':
  skgarden\mondrian\tree\_tree.c:14086:36: warning: passing argument 1 of '(PyObject * (*)(PyTypeObject *, PyArray_Descr *, int,  const npy_intp *, const npy_intp *, void *, int,  PyObject *))*(PyArray_API + 752u)' from incompatible pointer type [-Wincompatible-pointer-types]
     __pyx_t_2 = PyArray_NewFromDescr(((PyObject *)__pyx_ptype_5numpy_ndarray), ((PyArray_Descr *)__pyx_t_1), 1, __pyx_v_shape, __pyx_v_strides, ((void *)__pyx_v_self->nodes), NPY_DEFAULT, Py_None); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1073, __pyx_L1_error)
                                      ^
  skgarden\mondrian\tree\_tree.c:14086:36: note: expected 'PyTypeObject * {aka struct _typeobject *}' but argument is of type 'PyObject * {aka struct _object *}'
  skgarden\mondrian\tree\_tree.c: In function '__Pyx_ImportType':
  skgarden\mondrian\tree\_tree.c:19755:13: warning: unknown conversion type character 'z' in format [-Wformat=]
               "%s.%s size changed, may indicate binary incompatibility. "
               ^
  skgarden\mondrian\tree\_tree.c:19755:13: warning: unknown conversion type character 'z' in format [-Wformat=]
  skgarden\mondrian\tree\_tree.c:19755:13: warning: too many arguments for format [-Wformat-extra-args]
  skgarden\mondrian\tree\_tree.c: In function '__pyx_f_8skgarden_8mondrian_4tree_5_tree_4Tree_predict':
  skgarden\mondrian\tree\_tree.c:9245:51: warning: '__pyx_v_p_js' may be used uninitialized in this function [-Wmaybe-uninitialized]
               __pyx_v_p_nsy = (__pyx_v_p_nsy * (1.0 - __pyx_v_p_js));
                                                     ^
  gcc -g -shared build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_tree.o -LC:\Users\joean\anaconda3\libs -LC:\Users\joean\anaconda3\PCbuild\amd64 -lpython38 -o build\lib.win-amd64-3.8\skgarden\mondrian\tree\_tree.cp38-win_amd64.pyd
  building 'skgarden.mondrian.tree._splitter' extension
  compiling C sources
  C compiler: gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes
  
  compile options: '-D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c'
  extra options: '-O3'
  gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c skgarden\mondrian\tree\_splitter.c -o build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_splitter.o -O3
  In file included from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarraytypes.h:1822:0,
                   from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarrayobject.h:12,
                   from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/arrayobject.h:4,
                   from skgarden\mondrian\tree\_splitter.c:620:
  C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h:14:9: note: #pragma message: C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
   #pragma message(_WARN___LOC__"Using deprecated NumPy API, disable it with " \
           ^
  skgarden\mondrian\tree\_splitter.c: In function '__Pyx_ImportType':
  skgarden\mondrian\tree\_splitter.c:8657:13: warning: unknown conversion type character 'z' in format [-Wformat=]
               "%s.%s size changed, may indicate binary incompatibility. "
               ^
  skgarden\mondrian\tree\_splitter.c:8657:13: warning: unknown conversion type character 'z' in format [-Wformat=]
  skgarden\mondrian\tree\_splitter.c:8657:13: warning: too many arguments for format [-Wformat-extra-args]
  gcc -g -shared build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_splitter.o -LC:\Users\joean\anaconda3\libs -LC:\Users\joean\anaconda3\PCbuild\amd64 -lpython38 -o build\lib.win-amd64-3.8\skgarden\mondrian\tree\_splitter.cp38-win_amd64.pyd
  building 'skgarden.mondrian.tree._criterion' extension
  compiling C sources
  C compiler: gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes
  
  compile options: '-D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c'
  extra options: '-O3'
  gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c skgarden\mondrian\tree\_criterion.c -o build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_criterion.o -O3
  In file included from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarraytypes.h:1822:0,
                   from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarrayobject.h:12,
                   from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/arrayobject.h:4,
                   from skgarden\mondrian\tree\_criterion.c:620:
  C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h:14:9: note: #pragma message: C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
   #pragma message(_WARN___LOC__"Using deprecated NumPy API, disable it with " \
           ^
  skgarden\mondrian\tree\_criterion.c: In function '__Pyx_ImportType':
  skgarden\mondrian\tree\_criterion.c:10108:13: warning: unknown conversion type character 'z' in format [-Wformat=]
               "%s.%s size changed, may indicate binary incompatibility. "
               ^
  skgarden\mondrian\tree\_criterion.c:10108:13: warning: unknown conversion type character 'z' in format [-Wformat=]
  skgarden\mondrian\tree\_criterion.c:10108:13: warning: too many arguments for format [-Wformat-extra-args]
  gcc -g -shared build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_criterion.o -LC:\Users\joean\anaconda3\libs -LC:\Users\joean\anaconda3\PCbuild\amd64 -lpython38 -o build\lib.win-amd64-3.8\skgarden\mondrian\tree\_criterion.cp38-win_amd64.pyd
  building 'skgarden.mondrian.tree._utils' extension
  compiling C sources
  C compiler: gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes
  
  compile options: '-D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c'
  extra options: '-O3'
  gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c skgarden\mondrian\tree\_utils.c -o build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_utils.o -O3
  In file included from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarraytypes.h:1822:0,
                   from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarrayobject.h:12,
                   from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/arrayobject.h:4,
                   from skgarden\mondrian\tree\_utils.c:620:
  C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h:14:9: note: #pragma message: C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
   #pragma message(_WARN___LOC__"Using deprecated NumPy API, disable it with " \
           ^
  skgarden\mondrian\tree\_utils.c: In function '__Pyx_ImportType':
  skgarden\mondrian\tree\_utils.c:7697:13: warning: unknown conversion type character 'z' in format [-Wformat=]
               "%s.%s size changed, may indicate binary incompatibility. "
               ^
  skgarden\mondrian\tree\_utils.c:7697:13: warning: unknown conversion type character 'z' in format [-Wformat=]
  skgarden\mondrian\tree\_utils.c:7697:13: warning: too many arguments for format [-Wformat-extra-args]
  gcc -g -shared build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_utils.o -LC:\Users\joean\anaconda3\libs -LC:\Users\joean\anaconda3\PCbuild\amd64 -lpython38 -o build\lib.win-amd64-3.8\skgarden\mondrian\tree\_utils.cp38-win_amd64.pyd
  installing to build\bdist.win-amd64\wheel
  running install
  running install_lib
  creating build\bdist.win-amd64
  creating build\bdist.win-amd64\wheel
  creating build\bdist.win-amd64\wheel\skgarden
  copying build\lib.win-amd64-3.8\skgarden\forest.py -> build\bdist.win-amd64\wheel\.\skgarden
  creating build\bdist.win-amd64\wheel\skgarden\mondrian
  creating build\bdist.win-amd64\wheel\skgarden\mondrian\ensemble
  copying build\lib.win-amd64-3.8\skgarden\mondrian\ensemble\forest.py -> build\bdist.win-amd64\wheel\.\skgarden\mondrian\ensemble
  copying build\lib.win-amd64-3.8\skgarden\mondrian\ensemble\setup.py -> build\bdist.win-amd64\wheel\.\skgarden\mondrian\ensemble
  copying build\lib.win-amd64-3.8\skgarden\mondrian\ensemble\__init__.py -> build\bdist.win-amd64\wheel\.\skgarden\mondrian\ensemble
  copying build\lib.win-amd64-3.8\skgarden\mondrian\setup.py -> build\bdist.win-amd64\wheel\.\skgarden\mondrian
  creating build\bdist.win-amd64\wheel\skgarden\mondrian\tree
  copying build\lib.win-amd64-3.8\skgarden\mondrian\tree\setup.py -> build\bdist.win-amd64\wheel\.\skgarden\mondrian\tree
  copying build\lib.win-amd64-3.8\skgarden\mondrian\tree\tree.py -> build\bdist.win-amd64\wheel\.\skgarden\mondrian\tree
  copying build\lib.win-amd64-3.8\skgarden\mondrian\tree\_criterion.cp38-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\skgarden\mondrian\tree
  copying build\lib.win-amd64-3.8\skgarden\mondrian\tree\_splitter.cp38-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\skgarden\mondrian\tree
  copying build\lib.win-amd64-3.8\skgarden\mondrian\tree\_tree.cp38-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\skgarden\mondrian\tree
  copying build\lib.win-amd64-3.8\skgarden\mondrian\tree\_utils.cp38-win_amd64.pyd -> build\bdist.win-amd64\wheel\.\skgarden\mondrian\tree
  copying build\lib.win-amd64-3.8\skgarden\mondrian\tree\__init__.py -> build\bdist.win-amd64\wheel\.\skgarden\mondrian\tree
  copying build\lib.win-amd64-3.8\skgarden\mondrian\__init__.py -> build\bdist.win-amd64\wheel\.\skgarden\mondrian
  creating build\bdist.win-amd64\wheel\skgarden\quantile
  copying build\lib.win-amd64-3.8\skgarden\quantile\ensemble.py -> build\bdist.win-amd64\wheel\.\skgarden\quantile
  copying build\lib.win-amd64-3.8\skgarden\quantile\setup.py -> build\bdist.win-amd64\wheel\.\skgarden\quantile
  copying build\lib.win-amd64-3.8\skgarden\quantile\tree.py -> build\bdist.win-amd64\wheel\.\skgarden\quantile
  copying build\lib.win-amd64-3.8\skgarden\quantile\utils.py -> build\bdist.win-amd64\wheel\.\skgarden\quantile
  copying build\lib.win-amd64-3.8\skgarden\quantile\__init__.py -> build\bdist.win-amd64\wheel\.\skgarden\quantile
  copying build\lib.win-amd64-3.8\skgarden\setup.py -> build\bdist.win-amd64\wheel\.\skgarden
  copying build\lib.win-amd64-3.8\skgarden\__init__.py -> build\bdist.win-amd64\wheel\.\skgarden
  running install_egg_info
  running egg_info
  writing scikit_garden.egg-info\PKG-INFO
  writing dependency_links to scikit_garden.egg-info\dependency_links.txt
  writing requirements to scikit_garden.egg-info\requires.txt
  writing top-level names to scikit_garden.egg-info\top_level.txt
  reading manifest file 'scikit_garden.egg-info\SOURCES.txt'
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "C:\Users\joean\AppData\Local\Temp\pip-install-grpxsp24\scikit-garden\setup.py", line 36, in <module>
      setup(configuration=configuration,
    File "C:\Users\joean\anaconda3\lib\site-packages\numpy\distutils\core.py", line 169, in setup
      return old_setup(**new_attr)
    File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\__init__.py", line 153, in setup
      return distutils.core.setup(**attrs)
    File "C:\Users\joean\anaconda3\lib\distutils\core.py", line 148, in setup
      dist.run_commands()
    File "C:\Users\joean\anaconda3\lib\distutils\dist.py", line 966, in run_commands
      self.run_command(cmd)
    File "C:\Users\joean\anaconda3\lib\distutils\dist.py", line 985, in run_command
      cmd_obj.run()
    File "C:\Users\joean\anaconda3\lib\site-packages\wheel\bdist_wheel.py", line 326, in run
      self.run_command('install')
    File "C:\Users\joean\anaconda3\lib\distutils\cmd.py", line 313, in run_command
      self.distribution.run_command(command)
    File "C:\Users\joean\anaconda3\lib\distutils\dist.py", line 985, in run_command
      cmd_obj.run()
    File "C:\Users\joean\anaconda3\lib\site-packages\numpy\distutils\command\install.py", line 60, in run
      r = self.setuptools_run()
    File "C:\Users\joean\anaconda3\lib\site-packages\numpy\distutils\command\install.py", line 34, in setuptools_run
      return distutils_install.run(self)
    File "C:\Users\joean\anaconda3\lib\distutils\command\install.py", line 557, in run
      self.run_command(cmd_name)
    File "C:\Users\joean\anaconda3\lib\distutils\cmd.py", line 313, in run_command
      self.distribution.run_command(command)
    File "C:\Users\joean\anaconda3\lib\distutils\dist.py", line 985, in run_command
      cmd_obj.run()
    File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\install_egg_info.py", line 34, in run
      self.run_command('egg_info')
    File "C:\Users\joean\anaconda3\lib\distutils\cmd.py", line 313, in run_command
      self.distribution.run_command(command)
    File "C:\Users\joean\anaconda3\lib\distutils\dist.py", line 985, in run_command
      cmd_obj.run()
    File "C:\Users\joean\anaconda3\lib\site-packages\numpy\distutils\command\egg_info.py", line 25, in run
      _egg_info.run(self)
    File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\egg_info.py", line 298, in run
      self.find_sources()
    File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\egg_info.py", line 305, in find_sources
      mm.run()
    File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\egg_info.py", line 536, in run
      self.add_defaults()
    File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\egg_info.py", line 580, in add_defaults
      self.read_manifest()
    File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\sdist.py", line 190, in read_manifest
      self.filelist.append(line)
    File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\egg_info.py", line 478, in append
      path = convert_path(item)
    File "C:\Users\joean\anaconda3\lib\distutils\util.py", line 122, in convert_path
      raise ValueError("path '%s' cannot be absolute" % pathname)
  ValueError: path '/usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h' cannot be absolute
  ----------------------------------------
  ERROR: Failed building wheel for scikit-garden
    ERROR: Command errored out with exit status 1:
     command: 'C:\Users\joean\anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\joean\\AppData\\Local\\Temp\\pip-install-grpxsp24\\scikit-garden\\setup.py'"'"'; __file__='"'"'C:\\Users\\joean\\AppData\\Local\\Temp\\pip-install-grpxsp24\\scikit-garden\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\joean\AppData\Local\Temp\pip-record-nbrs0_3s\install-record.txt' --single-version-externally-managed --compile --install-headers 'C:\Users\joean\anaconda3\Include\scikit-garden'
         cwd: C:\Users\joean\AppData\Local\Temp\pip-install-grpxsp24\scikit-garden\
    Complete output (205 lines):
    Appending skgarden.mondrian.tree configuration to skgarden.mondrian
    Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.tree')
    Appending skgarden.mondrian.ensemble configuration to skgarden.mondrian
    Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.ensemble')
    Appending skgarden.mondrian configuration to skgarden
    Ignoring attempt to set 'name' (from 'skgarden' to 'skgarden.mondrian')
    Appending skgarden.quantile configuration to skgarden
    Ignoring attempt to set 'name' (from 'skgarden' to 'skgarden.quantile')
    Appending skgarden configuration to
    Ignoring attempt to set 'name' (from '' to 'skgarden')
    running install
    running build
    running config_cc
    unifing config_cc, config, build_clib, build_ext, build commands --compiler options
    running config_fc
    unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
    running build_src
    build_src
    building extension "skgarden.mondrian.tree._tree" sources
    building extension "skgarden.mondrian.tree._splitter" sources
    building extension "skgarden.mondrian.tree._criterion" sources
    building extension "skgarden.mondrian.tree._utils" sources
    build_src: building npy-pkg config files
    running build_py
    creating build
    creating build\lib.win-amd64-3.8
    creating build\lib.win-amd64-3.8\skgarden
    copying skgarden\forest.py -> build\lib.win-amd64-3.8\skgarden
    copying skgarden\setup.py -> build\lib.win-amd64-3.8\skgarden
    copying skgarden\__init__.py -> build\lib.win-amd64-3.8\skgarden
    creating build\lib.win-amd64-3.8\skgarden\mondrian
    copying skgarden\mondrian\setup.py -> build\lib.win-amd64-3.8\skgarden\mondrian
    copying skgarden\mondrian\__init__.py -> build\lib.win-amd64-3.8\skgarden\mondrian
    creating build\lib.win-amd64-3.8\skgarden\quantile
    copying skgarden\quantile\ensemble.py -> build\lib.win-amd64-3.8\skgarden\quantile
    copying skgarden\quantile\setup.py -> build\lib.win-amd64-3.8\skgarden\quantile
    copying skgarden\quantile\tree.py -> build\lib.win-amd64-3.8\skgarden\quantile
    copying skgarden\quantile\utils.py -> build\lib.win-amd64-3.8\skgarden\quantile
    copying skgarden\quantile\__init__.py -> build\lib.win-amd64-3.8\skgarden\quantile
    creating build\lib.win-amd64-3.8\skgarden\mondrian\ensemble
    copying skgarden\mondrian\ensemble\forest.py -> build\lib.win-amd64-3.8\skgarden\mondrian\ensemble
    copying skgarden\mondrian\ensemble\setup.py -> build\lib.win-amd64-3.8\skgarden\mondrian\ensemble
    copying skgarden\mondrian\ensemble\__init__.py -> build\lib.win-amd64-3.8\skgarden\mondrian\ensemble
    creating build\lib.win-amd64-3.8\skgarden\mondrian\tree
    copying skgarden\mondrian\tree\setup.py -> build\lib.win-amd64-3.8\skgarden\mondrian\tree
    copying skgarden\mondrian\tree\tree.py -> build\lib.win-amd64-3.8\skgarden\mondrian\tree
    copying skgarden\mondrian\tree\__init__.py -> build\lib.win-amd64-3.8\skgarden\mondrian\tree
    running build_ext
    customize Mingw32CCompiler
    customize Mingw32CCompiler using build_ext
    building 'skgarden.mondrian.tree._tree' extension
    compiling C sources
    C compiler: gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes
    
    creating build\temp.win-amd64-3.8\Release\skgarden
    creating build\temp.win-amd64-3.8\Release\skgarden\mondrian
    creating build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree
    compile options: '-D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c'
    extra options: '-O3'
    gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c skgarden\mondrian\tree\_tree.c -o build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_tree.o -O3
    In file included from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarraytypes.h:1822:0,
                     from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarrayobject.h:12,
                     from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/arrayobject.h:4,
                     from skgarden\mondrian\tree\_tree.c:620:
    C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h:14:9: note: #pragma message: C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
     #pragma message(_WARN___LOC__"Using deprecated NumPy API, disable it with " \
             ^
    skgarden\mondrian\tree\_tree.c: In function '__pyx_f_8skgarden_8mondrian_4tree_5_tree_4Tree__get_node_ndarray':
    skgarden\mondrian\tree\_tree.c:14086:36: warning: passing argument 1 of '(PyObject * (*)(PyTypeObject *, PyArray_Descr *, int,  const npy_intp *, const npy_intp *, void *, int,  PyObject *))*(PyArray_API + 752u)' from incompatible pointer type [-Wincompatible-pointer-types]
       __pyx_t_2 = PyArray_NewFromDescr(((PyObject *)__pyx_ptype_5numpy_ndarray), ((PyArray_Descr *)__pyx_t_1), 1, __pyx_v_shape, __pyx_v_strides, ((void *)__pyx_v_self->nodes), NPY_DEFAULT, Py_None); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 1073, __pyx_L1_error)
                                        ^
    skgarden\mondrian\tree\_tree.c:14086:36: note: expected 'PyTypeObject * {aka struct _typeobject *}' but argument is of type 'PyObject * {aka struct _object *}'
    skgarden\mondrian\tree\_tree.c: In function '__Pyx_ImportType':
    skgarden\mondrian\tree\_tree.c:19755:13: warning: unknown conversion type character 'z' in format [-Wformat=]
                 "%s.%s size changed, may indicate binary incompatibility. "
                 ^
    skgarden\mondrian\tree\_tree.c:19755:13: warning: unknown conversion type character 'z' in format [-Wformat=]
    skgarden\mondrian\tree\_tree.c:19755:13: warning: too many arguments for format [-Wformat-extra-args]
    skgarden\mondrian\tree\_tree.c: In function '__pyx_f_8skgarden_8mondrian_4tree_5_tree_4Tree_predict':
    skgarden\mondrian\tree\_tree.c:9245:51: warning: '__pyx_v_p_js' may be used uninitialized in this function [-Wmaybe-uninitialized]
                 __pyx_v_p_nsy = (__pyx_v_p_nsy * (1.0 - __pyx_v_p_js));
                                                       ^
    gcc -g -shared build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_tree.o -LC:\Users\joean\anaconda3\libs -LC:\Users\joean\anaconda3\PCbuild\amd64 -lpython38 -o build\lib.win-amd64-3.8\skgarden\mondrian\tree\_tree.cp38-win_amd64.pyd
    building 'skgarden.mondrian.tree._splitter' extension
    compiling C sources
    C compiler: gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes
    
    compile options: '-D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c'
    extra options: '-O3'
    gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c skgarden\mondrian\tree\_splitter.c -o build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_splitter.o -O3
    In file included from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarraytypes.h:1822:0,
                     from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarrayobject.h:12,
                     from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/arrayobject.h:4,
                     from skgarden\mondrian\tree\_splitter.c:620:
    C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h:14:9: note: #pragma message: C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
     #pragma message(_WARN___LOC__"Using deprecated NumPy API, disable it with " \
             ^
    skgarden\mondrian\tree\_splitter.c: In function '__Pyx_ImportType':
    skgarden\mondrian\tree\_splitter.c:8657:13: warning: unknown conversion type character 'z' in format [-Wformat=]
                 "%s.%s size changed, may indicate binary incompatibility. "
                 ^
    skgarden\mondrian\tree\_splitter.c:8657:13: warning: unknown conversion type character 'z' in format [-Wformat=]
    skgarden\mondrian\tree\_splitter.c:8657:13: warning: too many arguments for format [-Wformat-extra-args]
    gcc -g -shared build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_splitter.o -LC:\Users\joean\anaconda3\libs -LC:\Users\joean\anaconda3\PCbuild\amd64 -lpython38 -o build\lib.win-amd64-3.8\skgarden\mondrian\tree\_splitter.cp38-win_amd64.pyd
    building 'skgarden.mondrian.tree._criterion' extension
    compiling C sources
    C compiler: gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes
    
    compile options: '-D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c'
    extra options: '-O3'
    gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c skgarden\mondrian\tree\_criterion.c -o build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_criterion.o -O3
    In file included from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarraytypes.h:1822:0,
                     from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarrayobject.h:12,
                     from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/arrayobject.h:4,
                     from skgarden\mondrian\tree\_criterion.c:620:
    C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h:14:9: note: #pragma message: C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
     #pragma message(_WARN___LOC__"Using deprecated NumPy API, disable it with " \
             ^
    skgarden\mondrian\tree\_criterion.c: In function '__Pyx_ImportType':
    skgarden\mondrian\tree\_criterion.c:10108:13: warning: unknown conversion type character 'z' in format [-Wformat=]
                 "%s.%s size changed, may indicate binary incompatibility. "
                 ^
    skgarden\mondrian\tree\_criterion.c:10108:13: warning: unknown conversion type character 'z' in format [-Wformat=]
    skgarden\mondrian\tree\_criterion.c:10108:13: warning: too many arguments for format [-Wformat-extra-args]
    gcc -g -shared build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_criterion.o -LC:\Users\joean\anaconda3\libs -LC:\Users\joean\anaconda3\PCbuild\amd64 -lpython38 -o build\lib.win-amd64-3.8\skgarden\mondrian\tree\_criterion.cp38-win_amd64.pyd
    building 'skgarden.mondrian.tree._utils' extension
    compiling C sources
    C compiler: gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes
    
    compile options: '-D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c'
    extra options: '-O3'
    gcc -g -DDEBUG -DMS_WIN64 -O0 -Wall -Wstrict-prototypes -D__MSVCRT_VERSION__=0x1916 -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\lib\site-packages\numpy\core\include -IC:\Users\joean\anaconda3\include -IC:\Users\joean\anaconda3\include -c skgarden\mondrian\tree\_utils.c -o build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_utils.o -O3
    In file included from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarraytypes.h:1822:0,
                     from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/ndarrayobject.h:12,
                     from C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/arrayobject.h:4,
                     from skgarden\mondrian\tree\_utils.c:620:
    C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h:14:9: note: #pragma message: C:\Users\joean\anaconda3\lib\site-packages\numpy\core\include/numpy/npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
     #pragma message(_WARN___LOC__"Using deprecated NumPy API, disable it with " \
             ^
    skgarden\mondrian\tree\_utils.c: In function '__Pyx_ImportType':
    skgarden\mondrian\tree\_utils.c:7697:13: warning: unknown conversion type character 'z' in format [-Wformat=]
                 "%s.%s size changed, may indicate binary incompatibility. "
                 ^
    skgarden\mondrian\tree\_utils.c:7697:13: warning: unknown conversion type character 'z' in format [-Wformat=]
    skgarden\mondrian\tree\_utils.c:7697:13: warning: too many arguments for format [-Wformat-extra-args]
    gcc -g -shared build\temp.win-amd64-3.8\Release\skgarden\mondrian\tree\_utils.o -LC:\Users\joean\anaconda3\libs -LC:\Users\joean\anaconda3\PCbuild\amd64 -lpython38 -o build\lib.win-amd64-3.8\skgarden\mondrian\tree\_utils.cp38-win_amd64.pyd
    running install_lib
    copying build\lib.win-amd64-3.8\skgarden\mondrian\tree\_criterion.cp38-win_amd64.pyd -> C:\Users\joean\anaconda3\Lib\site-packages\skgarden\mondrian\tree
    copying build\lib.win-amd64-3.8\skgarden\mondrian\tree\_splitter.cp38-win_amd64.pyd -> C:\Users\joean\anaconda3\Lib\site-packages\skgarden\mondrian\tree
    copying build\lib.win-amd64-3.8\skgarden\mondrian\tree\_tree.cp38-win_amd64.pyd -> C:\Users\joean\anaconda3\Lib\site-packages\skgarden\mondrian\tree
    copying build\lib.win-amd64-3.8\skgarden\mondrian\tree\_utils.cp38-win_amd64.pyd -> C:\Users\joean\anaconda3\Lib\site-packages\skgarden\mondrian\tree
    running install_egg_info
    running egg_info
    writing scikit_garden.egg-info\PKG-INFO
    writing dependency_links to scikit_garden.egg-info\dependency_links.txt
    writing requirements to scikit_garden.egg-info\requires.txt
    writing top-level names to scikit_garden.egg-info\top_level.txt
    reading manifest file 'scikit_garden.egg-info\SOURCES.txt'
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "C:\Users\joean\AppData\Local\Temp\pip-install-grpxsp24\scikit-garden\setup.py", line 36, in <module>
        setup(configuration=configuration,
      File "C:\Users\joean\anaconda3\lib\site-packages\numpy\distutils\core.py", line 169, in setup
        return old_setup(**new_attr)
      File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\__init__.py", line 153, in setup
        return distutils.core.setup(**attrs)
      File "C:\Users\joean\anaconda3\lib\distutils\core.py", line 148, in setup
        dist.run_commands()
      File "C:\Users\joean\anaconda3\lib\distutils\dist.py", line 966, in run_commands
        self.run_command(cmd)
      File "C:\Users\joean\anaconda3\lib\distutils\dist.py", line 985, in run_command
        cmd_obj.run()
      File "C:\Users\joean\anaconda3\lib\site-packages\numpy\distutils\command\install.py", line 60, in run
        r = self.setuptools_run()
      File "C:\Users\joean\anaconda3\lib\site-packages\numpy\distutils\command\install.py", line 34, in setuptools_run
        return distutils_install.run(self)
      File "C:\Users\joean\anaconda3\lib\distutils\command\install.py", line 557, in run
        self.run_command(cmd_name)
      File "C:\Users\joean\anaconda3\lib\distutils\cmd.py", line 313, in run_command
        self.distribution.run_command(command)
      File "C:\Users\joean\anaconda3\lib\distutils\dist.py", line 985, in run_command
        cmd_obj.run()
      File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\install_egg_info.py", line 34, in run
        self.run_command('egg_info')
      File "C:\Users\joean\anaconda3\lib\distutils\cmd.py", line 313, in run_command
        self.distribution.run_command(command)
      File "C:\Users\joean\anaconda3\lib\distutils\dist.py", line 985, in run_command
        cmd_obj.run()
      File "C:\Users\joean\anaconda3\lib\site-packages\numpy\distutils\command\egg_info.py", line 25, in run
        _egg_info.run(self)
      File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\egg_info.py", line 298, in run
        self.find_sources()
      File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\egg_info.py", line 305, in find_sources
        mm.run()
      File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\egg_info.py", line 536, in run
        self.add_defaults()
      File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\egg_info.py", line 580, in add_defaults
        self.read_manifest()
      File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\sdist.py", line 190, in read_manifest
        self.filelist.append(line)
      File "C:\Users\joean\anaconda3\lib\site-packages\setuptools\command\egg_info.py", line 478, in append
        path = convert_path(item)
      File "C:\Users\joean\anaconda3\lib\distutils\util.py", line 122, in convert_path
        raise ValueError("path '%s' cannot be absolute" % pathname)
    ValueError: path '/usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h' cannot be absolute
    ----------------------------------------
ERROR: Command errored out with exit status 1: 'C:\Users\joean\anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\joean\\AppData\\Local\\Temp\\pip-install-grpxsp24\\scikit-garden\\setup.py'"'"'; __file__='"'"'C:\\Users\\joean\\AppData\\Local\\Temp\\pip-install-grpxsp24\\scikit-garden\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\joean\AppData\Local\Temp\pip-record-nbrs0_3s\install-record.txt' --single-version-externally-managed --compile --install-headers 'C:\Users\joean\anaconda3\Include\scikit-garden' Check the logs for full command output.

How to fix this issue?

opened by joeanton719 1

Cannot install scikit-garden on Ubuntu

Hello,

I managed to install scikit-garden on my Linux but it fails on my Ubuntu:

2020-12-08T18:45:02.0025765Z Collecting scikit-garden==0.1.3 (from -r /root//sku_potential_forecast/requirements.txt (line 15))
2020-12-08T18:45:02.1003720Z   Downloading https://files.pythonhosted.org/packages/63/0f/850592f6e8619d42086cdcc6a1731a4254f74db09878a155ab3d4cdc55ef/scikit-garden-0.1.3.tar.gz (317kB)
2020-12-08T18:45:05.5509924Z     Complete output from command python setup.py egg_info:
2020-12-08T18:45:05.5514464Z     /tmp/pip-install-6sv7xy9u/scikit-garden/.eggs/Cython-3.0a6-py3.6-linux-x86_64.egg/Cython/Compiler/Main.py:344: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-install-6sv7xy9u/scikit-garden/skgarden/mondrian/tree/_criterion.pxd
2020-12-08T18:45:05.5515246Z       tree = Parsing.p_module(s, pxd, full_module_name)
2020-12-08T18:45:05.5518317Z     
2020-12-08T18:45:05.5518784Z     Error compiling Cython file:
2020-12-08T18:45:05.5519630Z     ------------------------------------------------------------
2020-12-08T18:45:05.5520321Z     ...
2020-12-08T18:45:05.5520560Z     
2020-12-08T18:45:05.5520802Z     # See _utils.pyx for details.
2020-12-08T18:45:05.5521042Z     
2020-12-08T18:45:05.5521284Z     import numpy as np
2020-12-08T18:45:05.5521532Z     cimport numpy as np
2020-12-08T18:45:05.5522492Z     from _tree cimport Node
2020-12-08T18:45:05.5522946Z     ^
2020-12-08T18:45:05.5523652Z     ------------------------------------------------------------
2020-12-08T18:45:05.5524080Z     
2020-12-08T18:45:05.5524712Z     skgarden/mondrian/tree/_utils.pxd:13:0: '_tree.pxd' not found
2020-12-08T18:45:05.5525131Z     
2020-12-08T18:45:05.5525440Z     Error compiling Cython file:
2020-12-08T18:45:05.5526342Z     ------------------------------------------------------------
2020-12-08T18:45:05.5526681Z     ...
2020-12-08T18:45:05.5526887Z     
2020-12-08T18:45:05.5527126Z     # See _utils.pyx for details.
2020-12-08T18:45:05.5527446Z     
2020-12-08T18:45:05.5527833Z     import numpy as np
2020-12-08T18:45:05.5528083Z     cimport numpy as np
2020-12-08T18:45:05.5529211Z     from _tree cimport Node
2020-12-08T18:45:05.5529396Z     ^
2020-12-08T18:45:05.5530122Z     ------------------------------------------------------------
2020-12-08T18:45:05.5530353Z     
2020-12-08T18:45:05.5530764Z     skgarden/mondrian/tree/_utils.pxd:13:0: '_tree/Node.pxd' not found
2020-12-08T18:45:05.5530981Z     
2020-12-08T18:45:05.5531160Z     Error compiling Cython file:
2020-12-08T18:45:05.5531583Z     ------------------------------------------------------------
2020-12-08T18:45:05.5532182Z     ...
2020-12-08T18:45:05.5532505Z         (DTYPE_t*)
2020-12-08T18:45:05.5532658Z         (SIZE_t*)
2020-12-08T18:45:05.5532819Z         (unsigned char*)
2020-12-08T18:45:05.5532998Z         (DOUBLE_t*)
2020-12-08T18:45:05.5533317Z         (DOUBLE_t**)
2020-12-08T18:45:05.5533463Z         (Node*)
2020-12-08T18:45:05.5533776Z         ^
2020-12-08T18:45:05.5534606Z     ------------------------------------------------------------
2020-12-08T18:45:05.5534832Z     
2020-12-08T18:45:05.5535279Z     skgarden/mondrian/tree/_utils.pxd:40:5: 'Node' is not a type identifier
2020-12-08T18:45:05.5535495Z     
2020-12-08T18:45:05.5535667Z     Error compiling Cython file:
2020-12-08T18:45:05.5536072Z     ------------------------------------------------------------
2020-12-08T18:45:05.5536269Z     ...
2020-12-08T18:45:05.5536412Z         (SIZE_t*)
2020-12-08T18:45:05.5536563Z         (unsigned char*)
2020-12-08T18:45:05.5536716Z         (DOUBLE_t*)
2020-12-08T18:45:05.5536886Z         (DOUBLE_t**)
2020-12-08T18:45:05.5537391Z         (Node*)
2020-12-08T18:45:05.5537707Z         (Node**)
2020-12-08T18:45:05.5538044Z         ^
2020-12-08T18:45:05.5538465Z     ------------------------------------------------------------
2020-12-08T18:45:05.5538685Z     
2020-12-08T18:45:05.5539141Z     skgarden/mondrian/tree/_utils.pxd:41:5: 'Node' is not a type identifier
2020-12-08T18:45:05.5539387Z     
2020-12-08T18:45:05.5539568Z     Error compiling Cython file:
2020-12-08T18:45:05.5540047Z     ------------------------------------------------------------
2020-12-08T18:45:05.5540278Z     ...
2020-12-08T18:45:05.5540425Z         (SIZE_t*)
2020-12-08T18:45:05.5540614Z         (unsigned char*)
2020-12-08T18:45:05.5540787Z         (DOUBLE_t*)
2020-12-08T18:45:05.5540955Z         (DOUBLE_t**)
2020-12-08T18:45:05.5541136Z         (Node*)
2020-12-08T18:45:05.5541292Z         (Node**)
2020-12-08T18:45:05.5542348Z        ^
2020-12-08T18:45:05.5543040Z     ------------------------------------------------------------
2020-12-08T18:45:05.5543296Z     
2020-12-08T18:45:05.5543543Z     skgarden/mondrian/tree/_utils.pxd:41:4: Type specified multiple times
2020-12-08T18:45:05.5543813Z     
2020-12-08T18:45:05.5544002Z     Error compiling Cython file:
2020-12-08T18:45:05.5545000Z     ------------------------------------------------------------
2020-12-08T18:45:05.5545378Z     ...
2020-12-08T18:45:05.5545593Z             self.sum_total = NULL
2020-12-08T18:45:05.5545793Z             self.sum_left = NULL
2020-12-08T18:45:05.5546153Z             self.sum_right = NULL
2020-12-08T18:45:05.5546335Z             self.n_classes = NULL
2020-12-08T18:45:05.5546497Z     
2020-12-08T18:45:05.5546667Z             safe_realloc(&self.n_classes, n_outputs)
2020-12-08T18:45:05.5546865Z                        ^
2020-12-08T18:45:05.5547315Z     ------------------------------------------------------------
2020-12-08T18:45:05.5547510Z     
2020-12-08T18:45:05.5547723Z     skgarden/mondrian/tree/_criterion.pyx:554:20: ambiguous overloaded method
2020-12-08T18:45:05.5548409Z     
2020-12-08T18:45:05.5548576Z     Error compiling Cython file:
2020-12-08T18:45:05.5549057Z     ------------------------------------------------------------
2020-12-08T18:45:05.5549276Z     ...
2020-12-08T18:45:05.5549426Z             self.sum_total = NULL
2020-12-08T18:45:05.5549624Z             self.sum_left = NULL
2020-12-08T18:45:05.5549804Z             self.sum_right = NULL
2020-12-08T18:45:05.5549986Z             self.n_classes = NULL
2020-12-08T18:45:05.5550157Z     
2020-12-08T18:45:05.5550326Z             safe_realloc(&self.n_classes, n_outputs)
2020-12-08T18:45:05.5550669Z            ^
2020-12-08T18:45:05.5551087Z     ------------------------------------------------------------
2020-12-08T18:45:05.5554072Z     
2020-12-08T18:45:05.5554327Z     skgarden/mondrian/tree/_criterion.pyx:554:8: Invalid use of fused types, type cannot be specialized
2020-12-08T18:45:05.5554676Z     Traceback (most recent call last):
2020-12-08T18:45:05.5555071Z       File "<string>", line 1, in <module>
2020-12-08T18:45:05.5555672Z       File "/tmp/pip-install-6sv7xy9u/scikit-garden/setup.py", line 61, in <module>
2020-12-08T18:45:05.5555965Z         setup_requires=["cython"])
2020-12-08T18:45:05.5556446Z       File "/opt/conda/lib/python3.6/site-packages/numpy/distutils/core.py", line 135, in setup
2020-12-08T18:45:05.5556743Z         config = configuration()
2020-12-08T18:45:05.5557200Z       File "/tmp/pip-install-6sv7xy9u/scikit-garden/setup.py", line 25, in configuration
2020-12-08T18:45:05.5557649Z         config.add_subpackage('skgarden')
2020-12-08T18:45:05.5558187Z       File "/opt/conda/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 1020, in add_subpackage
2020-12-08T18:45:05.5558478Z         caller_level = 2)
2020-12-08T18:45:05.5558970Z       File "/opt/conda/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 989, in get_subpackage
2020-12-08T18:45:05.5559298Z         caller_level = caller_level + 1)
2020-12-08T18:45:05.5559855Z       File "/opt/conda/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 926, in _get_configuration_from_setup_py
2020-12-08T18:45:05.5560384Z         config = setup_module.configuration(*args)
2020-12-08T18:45:05.5560621Z       File "skgarden/setup.py", line 9, in configuration
2020-12-08T18:45:05.5560845Z         config.add_subpackage("mondrian")
2020-12-08T18:45:05.5561363Z       File "/opt/conda/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 1020, in add_subpackage
2020-12-08T18:45:05.5561912Z         caller_level = 2)
2020-12-08T18:45:05.5562440Z       File "/opt/conda/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 989, in get_subpackage
2020-12-08T18:45:05.5562757Z         caller_level = caller_level + 1)
2020-12-08T18:45:05.5563853Z       File "/opt/conda/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 926, in _get_configuration_from_setup_py
2020-12-08T18:45:05.5564215Z         config = setup_module.configuration(*args)
2020-12-08T18:45:05.5564480Z       File "skgarden/mondrian/setup.py", line 25, in configuration
2020-12-08T18:45:05.5565080Z         config.ext_modules = cythonize(config.ext_modules)
2020-12-08T18:45:05.5565735Z       File "/tmp/pip-install-6sv7xy9u/scikit-garden/.eggs/Cython-3.0a6-py3.6-linux-x86_64.egg/Cython/Build/Dependencies.py", line 1110, in cythonize
2020-12-08T18:45:05.5566245Z         cythonize_one(*args)
2020-12-08T18:45:05.5566843Z       File "/tmp/pip-install-6sv7xy9u/scikit-garden/.eggs/Cython-3.0a6-py3.6-linux-x86_64.egg/Cython/Build/Dependencies.py", line 1277, in cythonize_one
2020-12-08T18:45:05.5567320Z         raise CompileError(None, pyx_file)
2020-12-08T18:45:05.5567718Z     Cython.Compiler.Errors.CompileError: skgarden/mondrian/tree/_criterion.pyx
2020-12-08T18:45:05.5568031Z     Appending skgarden.mondrian.tree configuration to skgarden.mondrian
2020-12-08T18:45:05.5568591Z     Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.tree')
2020-12-08T18:45:05.5568923Z     Appending skgarden.mondrian.ensemble configuration to skgarden.mondrian
2020-12-08T18:45:05.5569692Z     Ignoring attempt to set 'name' (from 'skgarden.mondrian' to 'skgarden.mondrian.ensemble')
2020-12-08T18:45:05.5570465Z     Compiling skgarden/mondrian/tree/_tree.pyx because it depends on /tmp/pip-install-6sv7xy9u/scikit-garden/.eggs/Cython-3.0a6-py3.6-linux-x86_64.egg/Cython/Includes/cpython/weakref.pxd.
2020-12-08T18:45:05.5571357Z     Compiling skgarden/mondrian/tree/_splitter.pyx because it depends on /tmp/pip-install-6sv7xy9u/scikit-garden/.eggs/Cython-3.0a6-py3.6-linux-x86_64.egg/Cython/Includes/cpython/type.pxd.
2020-12-08T18:45:05.5572944Z     Compiling skgarden/mondrian/tree/_criterion.pyx because it depends on /tmp/pip-install-6sv7xy9u/scikit-garden/.eggs/Cython-3.0a6-py3.6-linux-x86_64.egg/Cython/Includes/cpython/type.pxd.
2020-12-08T18:45:05.5573841Z     Compiling skgarden/mondrian/tree/_utils.pyx because it depends on /tmp/pip-install-6sv7xy9u/scikit-garden/.eggs/Cython-3.0a6-py3.6-linux-x86_64.egg/Cython/Includes/cpython/type.pxd.
2020-12-08T18:45:05.5614691Z     [1/4] Cythonizing skgarden/mondrian/tree/_criterion.pyx

I just ran "pip install scikit-garden". I'm on python 3.6.5. From what I understand, pxd files seem to be missing from the installation package. This issue looks like this one on scikit-learn: https://github.com/scikit-learn/scikit-learn/issues/2057

Mark

opened by Mark531 0