Python Bayesian Resources

Bayesian Algorithm Execution (BAX) Code for the paper: Bayesian Algorithm Execution: Estimating Computable Properties of Black-box Functions Using Mut

Evidential Deep Learning for Guided Molecular Property Prediction and Discovery Ava Soleimany*, Alexander Amini*, Samuel Goldman*, Daniela Rus, Sangee

Bonsai is a wrapper for the XGBoost and Catboost model training pipelines that leverages Bayesian optimization for computationally efficient hyperparameter tuning.

Dangers of Bayesian Model Averaging under Covariate Shift This repository contains the code to reproduce the experiments in the paper Dangers of Bayes

SalsaNext: Fast, Uncertainty-aware Semantic Segmentation of LiDAR Point Clouds for Autonomous Driving Abstract In this paper, we introduce SalsaNext f

PosteriorStacker Combines Bayesian analyses from many datasets. Introduction Method Tutorial Output plot and files Introduction Fitting a model to a d

Few-shot Relation Extraction via Bayesian Meta-learning on Relation Graphs This is an implemetation of the paper Few-shot Relation Extraction via Baye

Bayesian optimization in JAX

PyMC3 is a Python package for Bayesian statistical modeling and Probabilistic Machine Learning focusing on advanced Markov chain Monte Carlo (MCMC) an

ArviZ (pronounced "AR-vees") is a Python package for exploratory analysis of Bayesian models. Includes functions for posterior analysis, data storage, model checking, comparison and diagnostics

OCTIS : Optimizing and Comparing Topic Models is Simple! OCTIS (Optimizing and Comparing Topic models Is Simple) aims at training, analyzing and compa

Bayesian Image Reconstruction using Deep Generative Models R. Marinescu, D. Moyer, P. Golland For technical inquiries, please create a Github issue. F

Bayesian-Torch is a library of neural network layers and utilities extending the core of PyTorch to enable the user to perform stochastic variational inference in Bayesian deep neural networks. Bayesian-Torch is designed to be flexible and seamless in extending a deterministic deep neural network architecture to corresponding Bayesian form by simply replacing the deterministic layers with Bayesian layers.

AutoOED is an optimal experiment design platform powered with automated machine learning to accelerate the discovery of optimal solutions. Our platform solves multi-objective optimization problems and automatically guides the design of experiment to be evaluated.

PClean: A Domain-Specific Probabilistic Programming Language for Bayesian Data Cleaning Warning: This is a rapidly evolving research prototype.

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ZhuSuan is a Python probabilistic programming library for Bayesian deep learning, which conjoins the complimentary advantages of Bayesian methods and

Pingouin is an open-source statistical package written in Python 3 and based mostly on Pandas and NumPy. Some of its main features are listed below. F

Edward is a Python library for probabilistic modeling, inference, and criticism. It is a testbed for fast experimentation and research with probabilis

Bayesian Active Learning (BaaL) BaaL is an active learning library developed at ElementAI. This repository contains techniques and reusable components

Disclaimer This project is stable and being incubated for long-term support. It may contain new experimental code, for which APIs are subject to chang

Bayesian inference in HSMMs and HMMs This is a Python library for approximate unsupervised inference in Bayesian Hidden Markov Models (HMMs) and expli

Bambi BAyesian Model-Building Interface in Python Overview Bambi is a high-level Bayesian model-building interface written in Python. It's built on to

pgmpy pgmpy is a python library for working with Probabilistic Graphical Models. Documentation and list of algorithms supported is at our official sit

Website | Documentation (release) | Documentation (develop) | Glossary Table of Contents What does GPflow do? Installation Getting Started with GPflow

FilterPy - Kalman filters and other optimal and non-optimal estimation filters in Python. NOTE: Imminent drop of support of Python 2.7, 3.4. See secti

Getting Started | Documentation | Community | Contributing Pyro is a flexible, scalable deep probabilistic programming library built on PyTorch. Notab

TensorFlow Probability TensorFlow Probability is a library for probabilistic reasoning and statistical analysis in TensorFlow. As part of the TensorFl

PyDLM Welcome to pydlm, a flexible time series modeling library for python. This library is based on the Bayesian dynamic linear model (Harrison and W

Summit Summit is a set of tools for optimising chemical processes. We’ve started by targeting reactions. What is Summit? Currently, reaction optimisat

BIGPrior: Towards Decoupling Learned Prior Hallucination and Data Fidelity in Image Restoration Authors: Majed El Helou, and Sabine Süsstrunk {Note: p

Infinitely Deep Bayesian Neural Networks with SDEs This library contains JAX and Pytorch implementations of neural ODEs and Bayesian layers for stocha

Note: This package is for use with GPFlow 1. For Bayesian optimization using GPFlow 2 please see Trieste, a joint effort with Secondmind. GPflowOpt GP

Scikit-Optimize Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very) expensive and noisy black-box functions. It implements

SafeOpt - Safe Bayesian Optimization This code implements an adapted version of the safe, Bayesian optimization algorithm, SafeOpt [1], [2]. It also p

Bayesian Optimization Pure Python implementation of bayesian global optimization with gaussian processes. PyPI (pip): $ pip install bayesian-optimizat

SMAC v3 Project Copyright (C) 2016-2018 AutoML Group Attention: This package is a reimplementation of the original SMAC tool (see reference below). Ho

BoTorch is a library for Bayesian Optimization built on PyTorch. BoTorch is currently in beta and under active development! Why BoTorch ? BoTorch Prov

MXFusion | | | | Tutorials | Documentation | Contribution Guide MXFusion is a modular deep probabilistic programming library. With MXFusion Modules yo

PyVarInf PyVarInf provides facilities to easily train your PyTorch neural network models using variational inference. Bayesian Deep Learning with Vari

Aboleth A bare-bones TensorFlow framework for Bayesian deep learning and Gaussian process approximation [1] with stochastic gradient variational Bayes

Gelato Bayesian dessert for Lasagne Recent results in Bayesian statistics for constructing robust neural networks have proved that it is one of the be

Getting Started | Documentation | Community | Contributing Pyro is a flexible, scalable deep probabilistic programming library built on PyTorch. Notab

auto-sklearn auto-sklearn is an automated machine learning toolkit and a drop-in replacement for a scikit-learn estimator. Find the documentation here

Time series analysis today is an important cornerstone of quantitative science in many disciplines, including natural and life sciences as well as eco

Modular Active Learning framework for Python3 Page contents Introduction Active learning from bird's-eye view modAL in action From zero to one in a fe

A Python library that helps data scientists to infer causation rather than observing correlation.

Neural Tangents ICLR 2020 Video | Paper | Quickstart | Install guide | Reference docs | Release notes Overview Neural Tangents is a high-level neural

UltraOpt : Distributed Asynchronous Hyperparameter Optimization better than HyperOpt. UltraOpt is a simple and efficient library to minimize expensive

PyMC3 is a Python package for Bayesian statistical modeling and Probabilistic Machine Learning focusing on advanced Markov chain Monte Carlo (MCMC) an

BayesO: A Bayesian optimization framework in Python Simple, but essential Bayesian optimization package. http://bayeso.org Online documentation Instal

numpy-ml Ever wish you had an inefficient but somewhat legible collection of machine learning algorithms implemented exclusively in NumPy? No? Install

Introduction neonrvm is an open source machine learning library for performing regression tasks using RVM technique. It is written in C programming la

Modular Active Learning framework for Python3 Page contents Introduction Active learning from bird's-eye view modAL in action From zero to one in a fe

Python package for Bayesian Machine Learning with scikit-learn API Installing & Upgrading package pip install https://github.com/AmazaspShumik/sklearn

pgmpy pgmpy is a python library for working with Probabilistic Graphical Models. Documentation and list of algorithms supported is at our official sit

Pebl is a python library and command line application for learning the structure of a Bayesian network given prior knowledge and observations. Pebl in

Spearmint Spearmint is a software package to perform Bayesian optimization. The Software is designed to automatically run experiments (thus the code n

Bayesian inference in HSMMs and HMMs This is a Python library for approximate unsupervised inference in Bayesian Hidden Markov Models (HMMs) and expli

Bayesian Methods for Hackers Using Python and PyMC The Bayesian method is the natural approach to inference, yet it is hidden from readers behind chap