Python Flame-graphs Resources

By default, networkx has problems with drawing self-loops in graphs. It makes it hard to draw a graph with self-loops or to make a nicely looking chord diagram. This repository provides some code to draw self-loops nicely

Fast k-NN graph construction for slow metrics

Convolutional Networks with Adaptive Inference Graphs (ConvNet-AIG) This repository contains a PyTorch implementation of the paper Convolutional Netwo

ncem Features Repository for the manuscript Fischer, D. S., Schaar, A. C. and Theis, F. Learning cell communication from spatial graphs of cells. 2021

PyKEEN PyKEEN (Python KnowlEdge EmbeddiNgs) is a Python package designed to train and evaluate knowledge graph embedding models (incorporating multi-m

Rapid Neural Architecture Search by Learning to Generate Graphs from Datasets This is the official PyTorch implementation for the paper Rapid Neural A

Box is a text-based visual programming language inspired by Unreal Engine blueprint function graphs. $ cat factorial.box ┌─ƒ(Factorial)───┐

Graph Transformer - Pytorch Implementation of Graph Transformer in Pytorch, for potential use in replicating Alphafold2. This was recently used by bot

Query Embedding on Hyper-Relational Knowledge Graphs This repository contains the code used for the experiments in the paper Query Embedding on Hyper-

NodePiece - Compositional and Parameter-Efficient Representations for Large Knowledge Graphs NodePiece is a "tokenizer" for reducing entity vocabulary

NoW Evaluation This is the official repository for evaluation on the NoW Benchmark Dataset. The goal of the NoW benchmark is to introduce a standard e

GraphSum This repo contains the data and code for the G2G model in the paper: Extracting Summary Knowledge Graphs from Long Documents. The other basel

MPLP: Metapath-Based Label Propagation for Heterogenous Graphs Results on MAG240M Here, we demonstrate the following performance on the MAG240M datase

Neural Deformation Graphs Project Page | Paper | Video Neural Deformation Graphs for Globally-consistent Non-rigid Reconstruction Aljaž Božič, Pablo P

rust-mdbg: Minimizer-space de Bruijn graphs (mdBG) for whole-genome assembly rust-mdbg is an ultra-fast minimizer-space de Bruijn graph (mdBG) impleme

BGraph BGraph is a tool designed to generate dependencies graphs from Android.bp soong files. Overview BGraph (for Build-Graphs) is a project aimed at

SysInfo SysInfo is an app developed in python which gives Basic System Info , and some detailed graphs of system performance . Installation Download t

Factor graphs + nonlinear optimization in JAX

A lightweight (serverless) native python parallel processing framework based on simple decorators and call graphs, supporting both control flow and dataflow execution paradigms as well as de-centralized CPU & GPU scheduling.

language-models-are-knowledge-graphs-pytorch Language models are open knowledge graphs ( work in progress ) A non official reimplementation of Languag

Matern Gaussian Processes on Graphs This repo provides an extension for gpflow with Matérn kernels, inducing variables and trainable models implemente

Few-shot Relation Extraction via Bayesian Meta-learning on Relation Graphs This is an implemetation of the paper Few-shot Relation Extraction via Baye

python_graphs This package is for computing graph representations of Python programs for machine learning applications. It includes the following modu

Continuous Query Decomposition This repository contains the official implementation for our ICLR 2021 (Oral) paper, Complex Query Answering with Neura

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

Beyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs Jiong Zhu, Yujun Yan, Lingxiao Zhao, Mark Heimann, Leman Akoglu,

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

(Comet-) ATOMIC 2020: On Symbolic and Neural Commonsense Knowledge Graphs Paper Jena D. Hwang, Chandra Bhagavatula, Ronan Le Bras, Jeff Da, Keisuke Sa

Structure-Aware-BART This repo contains codes for the following paper: Jiaao Chen, Diyi Yang:Structure-Aware Abstractive Conversation Summarization vi

Neighbor Averaging over Relation Subgraphs (NARS) NARS is an algorithm for node classification on heterogeneous graphs, based on scalable neighbor ave

QA-GNN: Question Answering using Language Models and Knowledge Graphs This repo provides the source code & data of our paper: QA-GNN: Reasoning with L

peartree 🍐 🌳 peartree is a library for converting GTFS feed schedules into a representative directed network graph. The tool uses Partridge to conve

OSMnx OSMnx is a Python package that lets you download geospatial data from OpenStreetMap and model, project, visualize, and analyze real-world street

New Benchmarks for Learning on Non-Homophilous Graphs Here are the codes and datasets accompanying the paper: New Benchmarks for Learning on Non-Homop

DeepSceneTextReader This is a c++ project deploying a deep scene text reading pipeline. It reads text from natural scene images. Prerequsites The proj

TensorFlow Fold TensorFlow Fold is a library for creating TensorFlow models that consume structured data, where the structure of the computation graph

Deploy tensorflow graphs for fast evaluation and export to tensorflow-less environments running numpy. Now with tensorflow 1.0 support. Evaluation usa

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

webview_d3 This is some PoC code to render graphs created with NetworkX natively using D3.js and pywebview. The main benifit of this approac

A command line stock market / portfolio tracker originally insipred by Ericm's Stonks program, featuring unicode for incredibly high detailed graphs even in a terminal.

nx_altair Draw NetworkX graphs with Altair nx_altair offers a similar draw API to NetworkX but returns Altair Charts instead. If you'd like to contrib

nx_altair Draw NetworkX graphs with Altair nx_altair offers a similar draw API to NetworkX but returns Altair Charts instead. If you'd like to contrib

vprof vprof is a Python package providing rich and interactive visualizations for various Python program characteristics such as running time and memo

CyGNet This repository reproduces the AAAI'21 paper “Learning from History: Modeling Temporal Knowledge Graphs with Sequential Copy-Generation Network

PyCG - Practical Python Call Graphs PyCG generates call graphs for Python code using static analysis. It efficiently supports Higher order functions T

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

StellarGraph Machine Learning Library StellarGraph is a Python library for machine learning on graphs and networks. Table of Contents Introduction Get

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

Documentation | External Resources | Datasets PyTorch Geometric Temporal is a temporal (dynamic) extension library for PyTorch Geometric. The library

vprof vprof is a Python package providing rich and interactive visualizations for various Python program characteristics such as running time and memo

Pyflame: A Ptracing Profiler For Python (This project is deprecated and not maintained.) Pyflame is a high performance profiling tool that generates f

Project Abandoned Many apologies. I've stopped maintaining this project due to personal time constraints. Blog post with more information. I'm happy t