118 Repositories
Python healthcare-imaging Libraries
Cancer metastasis detection with neural conditional random field (NCRF)
NCRF Prerequisites Data Whole slide images Annotations Patch images Model Training Testing Tissue mask Probability map Tumor localization FROC evaluat
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening Introduction This is an implementation of the model used for breast
Kaggle | 9th place single model solution for TGS Salt Identification Challenge
UNet for segmenting salt deposits from seismic images with PyTorch. General We, tugstugi and xuyuan, have participated in the Kaggle competition TGS S
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
PyTorch implementation of ARM-Net: Adaptive Relation Modeling Network for Structured Data.
A ready-to-use framework of latest models for structured (tabular) data learning with PyTorch. Applications include recommendation, CRT prediction, healthcare analytics, and etc.
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
What is nnDetection? Simultaneous localisation and categorization of objects in medical images, also referred to as medical object detection, is of hi
[ICML 2021, Long Talk] Delving into Deep Imbalanced Regression
Delving into Deep Imbalanced Regression This repository contains the implementation code for paper: Delving into Deep Imbalanced Regression Yuzhe Yang
A medical imaging framework for Pytorch
Welcome to MedicalTorch MedicalTorch is an open-source framework for PyTorch, implementing an extensive set of loaders, pre-processors and datasets fo
Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT
CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT CheXbert is an accurate, automated dee
The code release of paper 'Domain Generalization for Medical Imaging Classification with Linear-Dependency Regularization' NIPS 2020.
Domain Generalization for Medical Imaging Classification with Linear Dependency Regularization The code release of paper 'Domain Generalization for Me
Pneumonia Detection using machine learning - with PyTorch
Pneumonia Detection Pneumonia Detection using machine learning. Training was done in colab: DEMO: Result (Confusion Matrix): Data I uploaded my datase
3D medical imaging reconstruction software
InVesalius InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesaliu
Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation"
Medical-Transformer Pytorch Code for the paper "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" About this repo: This repo
3D Reconstruction Software
Meshroom is a free, open-source 3D Reconstruction Software based on the AliceVision Photogrammetric Computer Vision framework. Learn more details abou
Easy and comprehensive assessment of predictive power, with support for neuroimaging features
Documentation: https://raamana.github.io/neuropredict/ News As of v0.6, neuropredict now supports regression applications i.e. predicting continuous t
Machine learning for NeuroImaging in Python
nilearn Nilearn enables approachable and versatile analyses of brain volumes. It provides statistical and machine-learning tools, with instructive doc
The friendly PIL fork (Python Imaging Library)
Pillow Python Imaging Library (Fork) Pillow is the friendly PIL fork by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lund