Python Microscopy-dl-suite-tf Resources

SOFIMA SOFIMA (Scalable Optical Flow-based Image Montaging and Alignment) is a tool for stitching, aligning and warping large 2d, 3d and 4d microscopy

The Cairo bitwise integer library (cairo-bitwise-int v0.1.1) The Cairo smart tes

Card game A suite of card games written in the Python language. Features coming

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.

A DOM-based G-Suite password sprayer and user enumerator

Semantic Segmentation Suite in TensorFlow. Implement, train, and test new Semantic Segmentation models easily!

Overview Repository is a suite of tools for manipulating debian packages. At a h

Segment axon and myelin from microscopy data using deep learning. Written in Python. Using the TensorFlow framework. Based on a convolutional neural network architecture. Pixels are classified as either axon, myelin or background.

NoSQL-Attack-Suite This suite consists of two different scripts, made to automate attacks against NoSQL databases. The first one looks for a NoSQL Aut

The Qis|krypt⟩ is a software suite of protocols of quantum cryptography and quantum communications, as well, other protocols and algorithms, built using IBM’s open-source Software Development Kit for quantum computing Qiskit. ⚛️ 🔐

Turing Change Point Detection Benchmark Welcome to the repository for the Turing Change Point Detection Benchmark, a benchmark evaluation of change po

pytest_pyramid pytest_pyramid provides basic fixtures for testing pyramid applications with pytest test suite. By default, pytest_pyramid will create

cocos2d-x Win32 Others cocos2d-x is a multi-platform framework for building 2d games, interactive books, demos and other graphical applications. It is

Deep Learning segmentation suite dessigned for 2D microscopy image segmentation This repository provides researchers with a code to try different enco

Description Scout Suite is an open source multi-cloud security-auditing tool, which enables security posture assessment of cloud environments. Using t

gACSON gACSON software is to visualize, segment, and analyze the morphology of neurons in three-dimensional electron microscopy images. If you use any

TaskBench500 The TaskBench500 dataset and code for generating tasks. Data The TaskBench dataset is available under wget http://web.mit.edu/bzl/www/Tas

TaskBench500 The TaskBench500 dataset and code for generating tasks. Data The TaskBench dataset is available under wget http://web.mit.edu/bzl/www/Tas

PyCellID (building...) Functions to analyze Cell-ID single-cell cytometry data using python language. Dependecies for this project. attrs(=21.1.0) fo

ClearML - Auto-Magical Suite of tools to streamline your ML workflow Experiment Manager, MLOps and Data-Management ClearML Formerly known as Allegro T

DeepOBS - A Deep Learning Optimizer Benchmark Suite DeepOBS is a benchmarking suite that drastically simplifies, automates and improves the evaluation

Hive Burp Suite Extension Description Hive extension for Burp Suite. This extension allows you to send data from Burp to Hive in one click. Create iss

This a simple tool XSS Detection Suite for CTFs games

pyUpSet A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al. Contents Purpose How to install How it work

CIDRE About CIDRE is a retrospective illumination correction method for optical microscopy. It is designed to correct collections of images by buildin

BaSiC Matlab code accompanying A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images by Tingying Peng, Kurt Thorn, Timm Schr

ClearML - Auto-Magical Suite of tools to streamline your ML workflow Experiment Manager, MLOps and Data-Management ClearML Formerly known as Allegro T

Introduction The field of connectomics aims to reconstruct the wiring diagram of the brain by mapping the neural connections at the level of individua

Cytokit Cytokit is a collection of tools for quantifying and analyzing properties of individual cells in large fluorescent microscopy datasets with a

TProxer A Burp Suite extension made to automate the process of finding reverse proxy path based SSRF. How • Install • Todo • Join Discord How it works

FCPS Fundamental Clustering Problems Suite The package provides over sixty state-of-the-art clustering algorithms for unsupervised machine learning pu

Sparse deconvolution Python v0.3.0 Official Python implementation of the 'Sparse deconvolution', and the CPU (NumPy) and GPU (CuPy) calculation backen

CNE-OVS-SIT - OVS System Integration Test Suite Introduction User guide Discussion Introduction CNE-OVS-SIT is a test suite for OVS end-to-end functio

napari-threedee A suite of useful tools based on 3D interactivity in napari This napari plugin was generated with Cookiecutter using @napari's cookiec

VOLTS Voip Open Linear Tester Suite Functional tests for VoIP systems based on voip_patrol and docker 10'000 ft. view System is designed to run simple

ParamsExtractor A burp-suite plugin that extract all parameters name from in-scope requests. You can run the plugin while you are working on the targe

Documentation OWPHydroTools GitHub pages documentation Motivation We developed OWPHydroTools with data scientists in mind. We attempted to ensure the

A suite of benchmarks for CPU and GPU performance of the most popular high-performance libraries for Python :rocket:

Ritchie Formula Repo Documentation Contribute to the Ritchie community This repository contains rit formulas which can be executed by the ritchie-cli.

PortScanner Simple Port Scanner script written in Python, plans is to expand upon this script to turn it into a GUI based pen testing suite. #IMPORTAN

DataExtractor A simple Burp Suite extension to extract datas from source code. Features in scope parsing file extensions to ignore files exclusion bas

unblocker Burp Suite extension for encoding/decoding EVM calldata 0x00_prerequisites Burp Suite Java 8+ Python 2.7 0x01_installation clone this reposi

AICSImageIO Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python Features Supports reading metadata and imaging

MIMIC-III Benchmarks Python suite to construct benchmark machine learning datasets from the MIMIC-III clinical database. Currently, the benchmark data

Visions And these visions of data types, they kept us up past the dawn. Visions provides an extensible suite of tools to support common data analysis

WobblyStitcher Introduction A scalable implementation of WobblyStitcher Dependencies $ python -m pip install numpy scikit-image Visualization ImageJ

This repo contains code for running the evaluations and reproducing the results from the Jurassic-1 Technical Paper (see blog post), with current support for running the tasks through both the AI21 Studio API and OpenAI's GPT3 API.

A suite of utilities for AWS Lambda Functions that makes tracing with AWS X-Ray, structured logging and creating custom metrics asynchronously easier

Malcolm is a powerful, easily deployable network traffic analysis tool suite for full packet capture artifacts (PCAP files) and Zeek logs.

Burp GraphQL Logger A very simple, straightforward extension that logs GraphQL operations as a comment in the Proxy view. To enable the highlight, unc

FREAK Suite designed for passive recon Usage: python3 setup.py python3 freak.py warning This tool will throw error if you doesn't provide valid api ke

S2AND This repository provides access to the S2AND dataset and S2AND reference model described in the paper S2AND: A Benchmark and Evaluation System f

QuanTaichi: A Compiler for Quantized Simulations (SIGGRAPH 2021) Yuanming Hu, Jiafeng Liu, Xuanda Yang, Mingkuan Xu, Ye Kuang, Weiwei Xu, Qiang Dai, W

pytest-pytorch What is it? pytest-pytorch is a lightweight pytest-plugin that enhances the developer experience when working with the PyTorch test sui

Master status: Development status: Package information: scikit-rebate This package includes a scikit-learn-compatible Python implementation of ReBATE,

Odemis Odemis (Open Delmic Microscope Software) is the open-source microscopy software of Delmic B.V. Odemis is used for controlling microscopes of De

How to install Windows Mac OS X Fedora Ubuntu How to Build Debian and Ubuntu Fedora All Other Linux Distros Mac OS X Windows What is MusiKernel? MusiK

EmbedSeg Introduction This repository hosts the version of the code used for the preprint Embedding-based Instance Segmentation of Microscopy Images.

csvkit is a suite of command-line tools for converting to and working with CSV, the king of tabular file formats. It is inspired by pdftk, GDAL and th