41 Repositories
Python napari-crop Libraries
Automated bug/error reporting for napari
napari-error-monitor Want to help out napari? Install this plugin! This plugin will automatically send error reports to napari (via sentry.io) wheneve
GTK and Python based, simple multiple image editor tool
System Monitoring Center GTK3 and Python3 based, simple multiple image editor tool. Note: Development of this application is not completed yet. The ap
Napari sklearn decomposition
napari-sklearn-decomposition A simple plugin to use with napari This napari plug
Simple mathematical operations on image, point and surface layers.
napari-math This package provides a GUI interfrace for simple mathematical operations on image, point and surface layers. addition subtraction multipl
Interfaces between napari and pymeshlab library to allow import, export and construction of surfaces.
napari-pymeshlab Interfaces between napari and the pymeshlab library to allow import, export and construction of surfaces. This is a WIP and feature r
Source code for the plant extraction workflow introduced in the paper “Agricultural Plant Cataloging and Establishment of a Data Framework from UAV-based Crop Images by Computer Vision”
Plant extraction workflow Source code for the plant extraction workflow introduced in the paper "Agricultural Plant Cataloging and Establishment of a
Automatically download and crop key information from the arxiv daily paper. (cpu version)
Automatically download and crop key information from the arxiv daily paper. (cpu version)
Predicting Global Crop Yield for World Hunger
Crop Yield And Global Famine - The fifth project I created during my time at General Assembly. I completed this project with three other classmates in the span of three weeks. Most of my work was directly related to the modeling and EDA.
Plugin adapted from Ultralytics to bring YOLOv5 into Napari
napari-yolov5 Plugin adapted from Ultralytics to bring YOLOv5 into Napari. Training and detection can be done using the GUI. Training dataset must be
A discord bot to crop an NFT image living on the Solana blockchain.
NFT Discord Cropper This discord bot crops an NFT in your set measures by getting it through the .cache file which has been used to make a candy machi
Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images
napari-3d-ortho-viewer Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images This napari plugin was generated with Cookiecutter using @nap
A simple plugin to view APR images in napari
napari-apr-viewer A simple plugin to view APR images in napari This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-
A simple image-level annotation tool supporting multi-channel images for napari.
napari-labelimg4classification A simple image-level annotation tool supporting multi-channel images for napari. This napari plugin was generated with
Napari simpleitk image processing
napari-simpleitk-image-processing (n-SimpleITK) Process images using SimpleITK in napari Usage Filters of this napari plugin can be found in the Tools
✂️ EyeLipCropper is a Python tool to crop eyes and mouth ROIs of the given video.
EyeLipCropper EyeLipCropper is a Python tool to crop eyes and mouth ROIs of the given video. The whole process consists of three parts: frame extracti
Code for paper "Context-self contrastive pretraining for crop type semantic segmentation"
Code for paper "Context-self contrastive pretraining for crop type semantic segmentation" Setting up a python environment Follow the instruction in ht
Napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)
iterseg napari plugin for iteratively improving unet-watershed segmentation This napari plugin was generated with Cookiecutter using @napari's cookiec
A meta plugin for processing timelapse data timepoint by timepoint in napari
napari-time-slicer A meta plugin for processing timelapse data timepoint by timepoint. It enables a list of napari plugins to process 2D+t or 3D+t dat
Face recognize and crop them
Face Recognize Cropping Module Source 아이디어 Face Alignment with OpenCV and Python Requirement 필요 라이브러리 imutil dlib python-opence (cv2) Usage 사용 방법 open
A suite of useful tools based on 3D interactivity in napari
napari-threedee A suite of useful tools based on 3D interactivity in napari This napari plugin was generated with Cookiecutter using @napari's cookiec
Sample data for the napari image viewer.
napari-demo-data Sample data for the napari image viewer. This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugi
A napari plugin to inspect data within a cisTEM project
napari-cistem A plugin to inspect data within a cisTEM project This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-na
A python script editor for napari based on PyQode.
napari-script-editor A python script editor for napari based on PyQode. This napari plugin was generated with Cookiecutter using with @napari's cookie
A method to perform unsupervised cross-region adaptation of crop classifiers trained with satellite image time series.
TimeMatch Official source code of TimeMatch: Unsupervised Cross-region Adaptation by Temporal Shift Estimation by Joachim Nyborg, Charlotte Pelletier,
Small python-gtk application, which helps the user to merge or split pdf documents and rotate, crop and rearrange their pages using an interactive and intuitive graphical interface
Small python-gtk application, which helps the user to merge or split pdf documents and rotate, crop and rearrange their pages using an interactive and intuitive graphical interface
A napari plugin for visualising and interacting with electron cryotomograms
napari-subboxer A napari plugin for visualising and interacting with electron cryotomograms. Installation You can install napari-subboxer via pip: pip
Text layer for bio-image annotation.
napari-text-layer Napari text layer for bio-image annotation. Installation You can install using pip: pip install napari-text-layer Keybindings and m
A customized interface for single cell track visualisation based on pcnaDeep and napari.
pcnaDeep-napari A customized interface for single cell track visualisation based on pcnaDeep and napari. 👀 Under construction You can get test image
Automatically download and crop key information from the arxiv daily paper.
Arxiv daily 速览 功能:按关键词筛选arxiv每日最新paper,自动获取摘要,自动截取文中表格和图片。 1 测试环境 Ubuntu 16+ Python3.7 torch 1.9 Colab GPU 2 使用演示 首先下载权重baiduyun 提取码:il87,放置于code/Pars
A napari plugin for visualising and interacting with electron cryotomograms.
napari-tomoslice A napari plugin for visualising and interacting with electron cryotomograms. Installation You can install napari-tomoslice via pip: p
GPU-accelerated image processing using cupy and CUDA
napari-cupy-image-processing GPU-accelerated image processing using cupy and CUDA This napari plugin was generated with Cookiecutter using with @napar
Napari plugin for loading Bitplane Imaris files .ims
napari-imaris-loader Napari plugin for loading Bitplane Imaris files '.ims'. Notes: For this plugin to work "File/Preferences/Experimental/Render Imag
Crop regions in napari manually
napari-crop Crop regions in napari manually Usage Create a new shapes layer to annotate the region you would like to crop: Use the rectangle tool to a
impy is an all-in-one image analysis library, equipped with parallel processing, GPU support, GUI based tools and so on.
impy is All You Need in Image Analysis impy is an all-in-one image analysis library, equipped with parallel processing, GPU support, GUI based tools a
Deep Crop Rotation
Deep Crop Rotation Paper (to come very soon!) We propose a deep learning approach to modelling both inter- and intra-annual patterns for parcel classi
A utility for quickly cropping large collections of images.
Crop Tool A utility for quickly cropping large collections of images. Inspired by Derrick Schultz's dataset-tools. Setup It's suggested that you use A
CropImage is a simple toolkit for image cropping, detecting and cropping main body from pictures.
CropImage is a simple toolkit for image cropping, detecting and cropping main body from pictures. Support face and saliency detection.
Django helper application to easily and non-destructively crop arbitrarily large images in admin and frontend.
django-image-cropping django-image-cropping is an app for cropping uploaded images via Django's admin backend using Jcrop. Screenshot: django-image-cr
Collection of useful (to me) python scripts for interacting with napari
Napari scripts A collection of napari related tools in various state of disrepair/functionality. Browse_LIF_widget.py This module can be imported, for
Minimal implementation of PAWS (https://arxiv.org/abs/2104.13963) in TensorFlow.
PAWS-TF 🐾 Implementation of Semi-Supervised Learning of Visual Features by Non-Parametrically Predicting View Assignments with Support Samples (PAWS)
Image augmentation for machine learning experiments.
imgaug This python library helps you with augmenting images for your machine learning projects. It converts a set of input images into a new, much lar