7 Repositories
Python snakemake Libraries
Snakemake worflow to process and filter long read data from Oxford Nanopore Technologies.
Nanopore-Workflow Snakemake workflow to process and filter long read data from Oxford Nanopore Technologies. It is designed to compare whole human gen
5 May 13, 2022
Hg002-qc-snakemake - HG002 QC Snakemake
HG002 QC Snakemake To Run Resources and data specified within snakefile (hg002QC
2 Feb 16, 2022
Trio Assembly Snakemake Workflow
Trio Assembly Snakemake Workflow Input HiFi reads for child in bam format Either
1 Jan 28, 2022
Snakemake workflow for converting FASTQ files to self-contained CRAM files with maximum lossless compression.
Snakemake workflow: name A Snakemake workflow for description Usage The usage of this workflow is described in the Snakemake Workflow Catalog. If
1 Dec 16, 2021
HiFi DeepVariant + WhatsHap workflowHiFi DeepVariant + WhatsHap workflow
HiFi DeepVariant + WhatsHap workflow Workflow steps align HiFi reads to reference with pbmm2 call small variants with DeepVariant, using two-pass meth
2 May 14, 2022
A Snakemake workflow for standardised sc/snRNAseq analysis
single_snake_sequencing - sc/snRNAseq Snakemake Workflow A Snakemake workflow for standardised sc/snRNAseq analysis. Every single cell analysis is sli
1 Nov 2, 2021
An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
Germline Mutation Calling This Snakemake workflow follows the GATK best-practice recommandations to call small germline variants. The pipeline require
12 Dec 24, 2022