A library for uncertainty quantification based on PyTorch

Overview

Torchuq [logo here]

TorchUQ is an extensive library for uncertainty quantification (UQ) based on pytorch. TorchUQ currently supports 10 representations for uncertainty, and around 50 different methods for uncertainty evaluation and visualization, calibration and conformal prediction.

Why TorchUQ

TorchUQ is a one-stop solution for uncertainty quantification (UQ).

Accurate uncertainty quantification (UQ) is extremely important in high-stakes applications such as autonomous driving, healthcare, and public policy --- prediction models in such applications should know what they do not know. UQ also finds numerous applications in active learning, statistical inference, or in natural science and engineering applications that are rife with sources of uncertainty.

For practitioners

Torchuq aims to provide an easy to use arsenal of uncertainty quantification methods. Torchuq is designed for the following benefits:

Plug and Play: Simple unified interface to access a large arsenal of UQ methods.

Built on PyTorch: Native GPU & auto-diff support, seamless integration with deep learning pipelines.

Documentation: Detailed tutorial to walk through popular UQ algorithms. Extensive documentation.

Extensive and Extensible: Supports calibration, conformal, multi-calibration and forecast evaluation. Easy to add new methods.

For researchers

Torchuq aims to provide a easy to use platform for conducting and distributing research on uncertainty quantification. Torchuq is designed for the following benefits:

Baseline implementation: TorchUQ provides high quality implementation of many popular baseline methods to standardize comparison.

Benchmark datasets: a large set of datasets used in recent UQ papers with a one-line interface to retrieve these datasets.

Distribute your research: you are welcome to distribute your algorithm via the TorchUQ interface. For details see [link].

Installation

First download the torchuq from pypi. To run the code, you can install the dependencies with the follwoing command

pip3 install requirements

pypi package link to come

Quickstart

import torchuq
from torchuq.evaluate import distribution 
from torchuq.transform.conformal import ConformalCalibrator 
from torchuq.dataset import create_example_regression  

In this very simple example, we create a synthetic prediction (which is a set of Gaussian distributions) and recalibrate them with conformal calibration.

predictions, labels = create_example_regression()

The example predictions are intentially incorrect (i.e. the label is not drawn from the predictions). We will recalibrate the distribution with a powerful recalibration algorithm called conformal calibration. It takes as input the predictions and the labels, and learns a recalibration map that can be applied to new data (here for illustration purposes we apply it to the original data).

calibrator = ConformalCalibrator(input_type='distribution', interpolation='linear')
calibrator.train(predictions, labels)
adjusted_predictions = calibrator(predictions)

We can plot these distribution predictions as a sequence of density functions, and the labels as the cross-shaped markers. As shown by the plot, the original predictions have systematically incorrect variance and mean, which is fixed by the recalibration algorithm.

distribution.plot_density_sequence(predictions, labels, smooth_bw=10)
distribution.plot_density_sequence(adjusted_predictions, labels, smooth_bw=10)

plot_original plot_calibrate

What's Next?

A good way to start is to read about the basic design philosophy and usage of the package, then go through these tutorials. All the tutorials are interactive jupyter notebooks. You can either download them to run locally or view them here.

You might also like...
Code for Deterministic Neural Networks with Appropriate Inductive Biases Capture Epistemic and Aleatoric Uncertainty
Code for Deterministic Neural Networks with Appropriate Inductive Biases Capture Epistemic and Aleatoric Uncertainty

Deep Deterministic Uncertainty This repository contains the code for Deterministic Neural Networks with Appropriate Inductive Biases Capture Epistemic

noisy labels; missing labels; semi-supervised learning; entropy; uncertainty; robustness and generalisation.

ProSelfLC: CVPR 2021 ProSelfLC: Progressive Self Label Correction for Training Robust Deep Neural Networks For any specific discussion or potential fu

[CVPR'21] MonoRUn: Monocular 3D Object Detection by Reconstruction and Uncertainty Propagation
[CVPR'21] MonoRUn: Monocular 3D Object Detection by Reconstruction and Uncertainty Propagation

MonoRUn MonoRUn: Monocular 3D Object Detection by Reconstruction and Uncertainty Propagation. CVPR 2021. [paper] Hansheng Chen, Yuyao Huang, Wei Tian*

Sync2Gen Code for ICCV 2021 paper: Scene Synthesis via Uncertainty-Driven Attribute Synchronization
Sync2Gen Code for ICCV 2021 paper: Scene Synthesis via Uncertainty-Driven Attribute Synchronization

Sync2Gen Code for ICCV 2021 paper: Scene Synthesis via Uncertainty-Driven Attribute Synchronization 0. Environment Environment: python 3.6 and cuda 10

 Estimating and Exploiting the Aleatoric Uncertainty in Surface Normal Estimation
Estimating and Exploiting the Aleatoric Uncertainty in Surface Normal Estimation

Estimating and Exploiting the Aleatoric Uncertainty in Surface Normal Estimation

TensorFlow implementation of
TensorFlow implementation of "A Simple Baseline for Bayesian Uncertainty in Deep Learning"

TensorFlow implementation of "A Simple Baseline for Bayesian Uncertainty in Deep Learning"

 Relative Uncertainty Learning for Facial Expression Recognition
Relative Uncertainty Learning for Facial Expression Recognition

Relative Uncertainty Learning for Facial Expression Recognition The official implementation of the following paper at NeurIPS2021: Title: Relative Unc

Code of Adverse Weather Image Translation with Asymmetric and Uncertainty aware GAN
Code of Adverse Weather Image Translation with Asymmetric and Uncertainty aware GAN

Adverse Weather Image Translation with Asymmetric and Uncertainty-aware GAN (AU-GAN) Official Tensorflow implementation of Adverse Weather Image Trans

A Weakly Supervised Amodal Segmenter with Boundary Uncertainty Estimation

Paper Khoi Nguyen, Sinisa Todorovic "A Weakly Supervised Amodal Segmenter with Boundary Uncertainty Estimation", accepted to ICCV 2021 Our code is mai

Owner
TorchUQ
TorchUQ
Fast and scalable uncertainty quantification for neural molecular property prediction, accelerated optimization, and guided virtual screening.

Evidential Deep Learning for Guided Molecular Property Prediction and Discovery Ava Soleimany*, Alexander Amini*, Samuel Goldman*, Daniela Rus, Sangee

Alexander Amini 75 Dec 15, 2022
A python toolbox for predictive uncertainty quantification, calibration, metrics, and visualization

Website, Tutorials, and Docs    Uncertainty Toolbox A python toolbox for predictive uncertainty quantification, calibration, metrics, and visualizatio

Uncertainty Toolbox 1.4k Dec 28, 2022
TensorFlow implementation for Bayesian Modeling and Uncertainty Quantification for Learning to Optimize: What, Why, and How

Bayesian Modeling and Uncertainty Quantification for Learning to Optimize: What, Why, and How TensorFlow implementation for Bayesian Modeling and Unce

Shen Lab at Texas A&M University 8 Sep 2, 2022
A library for uncertainty representation and training in neural networks.

Epistemic Neural Networks A library for uncertainty representation and training in neural networks. Introduction Many applications in deep learning re

DeepMind 211 Dec 12, 2022
the code for paper "Energy-Based Open-World Uncertainty Modeling for Confidence Calibration"

EOW-Softmax This code is for the paper "Energy-Based Open-World Uncertainty Modeling for Confidence Calibration". Accepted by ICCV21. Usage Commnd exa

Yezhen Wang 36 Dec 2, 2022
Official PyTorch implementation of UACANet: Uncertainty Aware Context Attention for Polyp Segmentation

UACANet: Uncertainty Aware Context Attention for Polyp Segmentation Official pytorch implementation of UACANet: Uncertainty Aware Context Attention fo

Taehun Kim 85 Dec 14, 2022
git git《Transformer Meets Tracker: Exploiting Temporal Context for Robust Visual Tracking》(CVPR 2021) GitHub:git2] 《Masksembles for Uncertainty Estimation》(CVPR 2021) GitHub:git3]

Transformer Meets Tracker: Exploiting Temporal Context for Robust Visual Tracking Ning Wang, Wengang Zhou, Jie Wang, and Houqiang Li Accepted by CVPR

NingWang 236 Dec 22, 2022
The repo of the preprinting paper "Labels Are Not Perfect: Inferring Spatial Uncertainty in Object Detection"

Inferring Spatial Uncertainty in Object Detection A teaser version of the code for the paper Labels Are Not Perfect: Inferring Spatial Uncertainty in

ZINING WANG 21 Mar 3, 2022
Uncertainty-aware Semantic Segmentation of LiDAR Point Clouds for Autonomous Driving

SalsaNext: Fast, Uncertainty-aware Semantic Segmentation of LiDAR Point Clouds for Autonomous Driving Abstract In this paper, we introduce SalsaNext f

null 308 Jan 4, 2023
Aerial Single-View Depth Completion with Image-Guided Uncertainty Estimation (RA-L/ICRA 2020)

Aerial Depth Completion This work is described in the letter "Aerial Single-View Depth Completion with Image-Guided Uncertainty Estimation", by Lucas

ETHZ V4RL 70 Dec 22, 2022