CSKG is a commonsense knowledge graph that combines seven popular sources into a consolidated representation

USC ISI I2

Last update: Dec 12, 2022

Related tags

Overview

CSKG: The CommonSense Knowledge Graph

CSKG is a commonsense knowledge graph that combines seven popular sources into a consolidated representation:

ATOMIC
ConceptNet
FrameNet
Roget
Visual Genome
Wikidata (We use the Wikidata-CS subset)
WordNet

CSKG is represented as a hyper-relational graph, by using the KGTK data model and file specification. Its creation is entirely supported by KGTK operations.

CSKG is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.

Getting started

Documentation

https://cskg.readthedocs.io/en/latest/

Data

Embeddings

CSKG embeddings on google drive
CSKG is integrated into PyKeen which allows easy computation of various (currently 25) state-of-the-art graph embeddings

More info

Consolidating your own CSKG

Setup your conda environment

conda create --name mowgli --file requirements.txt
conda activate mowgli

Download and store individual sources, except WordNet and FrameNet. By default, these should be stored in the input directory.
Download the mappings from this folder and place them inside the input directory
Customize and run create_cskg.sh.

How to cite

@article{ilievski2021cskg,
  title={CSKG: The CommonSense Knowledge Graph},
  author={Ilievski, Filip and Szekely, Pedro and Zhang, Bin},
  journal={Extended Semantic Web Conference (ESWC)},
  year={2021}
}

Comments

Analyse CSKG Notebook: broken pipe errors while running zcat commands, kgtk queries and head commands
Issues while running Analyse CSKG Notebook:

In the first cell in that sets up environment variables and paths, the files mentioned in the code do not exist. I changed those paths to other files available in the shared drive folder kg = "cskg_connected.kgtk.gz" (changed to “cskg.tsv.gz”) nkg = "cskg-normalized.kgtk.gz" (changed to “cskg_connected_normalized.tsv.gz”)

The zcat commands, kgtk query and head commands do not give the desired results due to several errors including broken pipe, as shown in screencapture3.pdf attached herewith.
opened by jaleedkhan 4
Bump nbconvert from 6.0.7 to 6.3.0
Bumps nbconvert from 6.0.7 to 6.3.0.

Commits

cefe0bf Release 6.3.0

a534fb9 Release 6.3.0b0

87920c5 Add changelog for 6.3.0 (#1669)

dd6d9c7 add slide numbering (#1654)

5d2c5e2 Update state filter (#1664)

11ea593 fix: avoid closing the script tag early by escaping a forward slash (#1665)

968c5fb Fix HTML templates mentioned in help docs (#1653)

35c4d07 Add a new output filter that excludes widgets if there is no state (#1643)

c663c75 6.2.0

fd1dd15 6.2.0rc2

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dependencies
opened by dependabot[bot] 1
Bump ujson from 4.0.1 to 5.2.0
Bumps ujson from 4.0.1 to 5.2.0.

Release notes

Sourced from ujson's releases.

5.2.0

Added

Support parsing NaN, Infinity and -Infinity (#514) @Erotemic

Support dynamically linking against system double-conversion library (#508) @musicinmybrain

Add env var to control stripping debug info (#507) @musicinmybrain

Add JSONDecodeError (#498) @JustAnotherArchivist

Fixed

Fix buffer overflows (CVE-2021-45958) (#519) @JustAnotherArchivist

Upgrade Black to fix Click (#515) @hugovk

simplify exception handling on integer overflow (#510) @RouquinBlanc

Remove dead code that used to handle the separate int type in Python 2 (#509) @JustAnotherArchivist

Fix exceptions on encoding list or dict elements and non-overflow errors on int handling getting silenced (#505) @JustAnotherArchivist

5.1.0

Changed

Strip debugging symbols from Linux binaries (#493) @bwoodsend

5.0.0

Added

Use cibuildwheel to build wheels (#491) @bwoodsend

Removed

Drop support for soon-EOL Python 3.6 (#490) @hugovk

Fixed

Install Twine to upload to PyPI (#492) @hugovk

4.3.0

Added

Enable Windows on ARM64 target (#488) @nsait-linaro

4.2.0

Added

Add a default keyword argument to dumps (#470) @garenchan

Add support for Python 3.10 (#472) @hugovk

Build 32-bit wheels for Windows (#481) @hugovk

Build PyPy3 wheels for manylinux (#475) @hugovk

Build wheels for musl aarch64 (aka ARM) Linux (musllinux_1_1_aarch64) (#478) @bwoodsend

Build wheels for musl Linux (musllinux_1_1_x86_64) (#476) @bwoodsend

Changed

... (truncated)

Commits

f6860f1 Remove shebang

c0ff7b1 python -m pytest

362fed3 Clearer pytest command

82917c0 actions/checkout@v3

3c095f1 Widen tests to cover more possible buffer overflows

f4d2c87 Refactor buffer reservations to ensure sufficient space on all additions

1846e08 Add fuzz test to CI/CD.

5875168 Fix some more seg-faults on encoding.

1a39406 Remove the hidden JSON_NO_EXTRA_WHITESPACE compile knob.

20aa1a6 Add a fuzzing test to search for segfaults in encoding.

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dependencies
opened by dependabot[bot] 1
Bump pillow from 8.3.2 to 9.0.0
Bumps pillow from 8.3.2 to 9.0.0.

Release notes

Sourced from pillow's releases.

9.0.0

https://pillow.readthedocs.io/en/stable/releasenotes/9.0.0.html

Changes

Restrict builtins for ImageMath.eval() #5923 [@radarhere]

Ensure JpegImagePlugin stops at the end of a truncated file #5921 [@radarhere]

Fixed ImagePath.Path array handling #5920 [@radarhere]

Remove consecutive duplicate tiles that only differ by their offset #5919 [@radarhere]

Removed redundant part of condition #5915 [@radarhere]

Explicitly enable strip chopping for large uncompressed TIFFs #5517 [@kmilos]

Use the Windows method to get TCL functions on Cygwin #5807 [@DWesl]

Changed error type to allow for incremental WebP parsing #5404 [@radarhere]

Improved I;16 operations on big endian #5901 [@radarhere]

Ensure that BMP pixel data offset does not ignore palette #5899 [@radarhere]

Limit quantized palette to number of colors #5879 [@radarhere]

Use latin1 encoding to decode bytes #5870 [@radarhere]

Fixed palette index for zeroed color in FASTOCTREE quantize #5869 [@radarhere]

When saving RGBA to GIF, make use of first transparent palette entry #5859 [@radarhere]

Pass SAMPLEFORMAT to libtiff #5848 [@radarhere]

Added rounding when converting P and PA #5824 [@radarhere]

Improved putdata() documentation and data handling #5910 [@radarhere]

Exclude carriage return in PDF regex to help prevent ReDoS #5912 [@radarhere]

Image.NONE is only used for resampling and dithers #5908 [@radarhere]

Fixed freeing pointer in ImageDraw.Outline.transform #5909 [@radarhere]

Add Tidelift alignment action and badge #5763 [@aclark4life]

Replaced further direct invocations of setup.py #5906 [@radarhere]

Added ImageShow support for xdg-open #5897 [@m-shinder]

Fixed typo #5902 [@radarhere]

Switched from deprecated "setup.py install" to "pip install ." #5896 [@radarhere]

Support 16-bit grayscale ImageQt conversion #5856 [@cmbruns]

Fixed raising OSError in _safe_read when size is greater than SAFEBLOCK #5872 [@radarhere]

Convert subsequent GIF frames to RGB or RGBA #5857 [@radarhere]

WebP: Fix memory leak during decoding on failure #5798 [@ilai-deutel]

Do not prematurely return in ImageFile when saving to stdout #5665 [@infmagic2047]

Added support for top right and bottom right TGA orientations #5829 [@radarhere]

Corrected ICNS file length in header #5845 [@radarhere]

Block tile TIFF tags when saving #5839 [@radarhere]

Added line width argument to ImageDraw polygon #5694 [@radarhere]

Do not redeclare class each time when converting to NumPy #5844 [@radarhere]

Only prevent repeated polygon pixels when drawing with transparency #5835 [@radarhere]

Fix pushes_fd method signature #5833 [@hoodmane]

Add support for pickling TrueType fonts #5826 [@hugovk]

Only prefer command line tools SDK on macOS over default MacOSX SDK #5828 [@radarhere]

Fix compilation on 64-bit Termux #5793 [@landfillbaby]

Replace 'setup.py sdist' with '-m build --sdist' #5785 [@hugovk]

Use declarative package configuration #5784 [@hugovk]

Use title for display in ImageShow #5788 [@radarhere]

Fix for PyQt6 #5775 [@hugovk]

... (truncated)

Changelog

Sourced from pillow's changelog.

9.0.0 (2022-01-02)

Restrict builtins for ImageMath.eval(). CVE-2022-22817 #5923 [radarhere]

Ensure JpegImagePlugin stops at the end of a truncated file #5921 [radarhere]

Fixed ImagePath.Path array handling. CVE-2022-22815, CVE-2022-22816 #5920 [radarhere]

Remove consecutive duplicate tiles that only differ by their offset #5919 [radarhere]

Improved I;16 operations on big endian #5901 [radarhere]

Limit quantized palette to number of colors #5879 [radarhere]

Fixed palette index for zeroed color in FASTOCTREE quantize #5869 [radarhere]

When saving RGBA to GIF, make use of first transparent palette entry #5859 [radarhere]

Pass SAMPLEFORMAT to libtiff #5848 [radarhere]

Added rounding when converting P and PA #5824 [radarhere]

Improved putdata() documentation and data handling #5910 [radarhere]

Exclude carriage return in PDF regex to help prevent ReDoS #5912 [hugovk]

Fixed freeing pointer in ImageDraw.Outline.transform #5909 [radarhere]

Added ImageShow support for xdg-open #5897 [m-shinder, radarhere]

Support 16-bit grayscale ImageQt conversion #5856 [cmbruns, radarhere]

Convert subsequent GIF frames to RGB or RGBA #5857 [radarhere]

... (truncated)

Commits

82541b6 9.0.0 version bump

cae5ac4 Merge pull request #5924 from radarhere/cves

ed4cf78 CVEs TBD

d7f60d1 Merge pull request #5923 from radarhere/imagemath_eval

8531b01 Restrict builtins for ImageMath.eval

1efb1d9 Merge pull request #5922 from radarhere/releasenotes

f6c7871 Added release notes for #5919, #5920 and #5921

032d2dc Update CHANGES.rst [ci skip]

baae9ec Merge pull request #5921 from radarhere/jpeg_eoi

1059eb5 If appended EOI did not work, do not keep trying

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dependencies
opened by dependabot[bot] 1
Where can I find mappings file?

I tried to reproduce creating CSKG procedure, by running consolidation/create_cskg.sh. But I can't find any input/mappings/*.csv files in this repository for further step.

Could you provide wn_wn_mappings.csv, fn_cn_mappings.csv and wn_wdt_mappings.csv?

opened by dreamingjudith 1
Playing with CSKG Grounding Notebook: 'grounding/groundcn' and 'grounding/groundcskg' folders empty causing failed imports
Issues while running Playing with CSKG Grounding Notebook:

Numberbatch file and BERT embeddings were downloaded and placed into the directory ../output/embeddings, and gunzip-ed.

Needed to install pygraphviz package before running the notebook: !apt-get update -y !apt-get install -y graphviz libgraphviz-dev graphviz-dev pkg-config !python -m pip install pygraphviz

The ‘groundcn’ and ‘groundcskg’ folders in the ‘../grounding/’ folder are empty and do not contain ‘graphify’, due to which “from groundcn.graphify import graphify”, “from groundcn.graphify import link” and “from groundcskg.graphify import link” throw the ModuleNotFoundError error and rest of the code does not execute, as shown in screencapture5.pdf attached herewith.
opened by jaleedkhan 1

Two exceptions in tutorial/Playing with grounding.ipynb notebook: "KeyError: 'token_embedders'" and "ConfigurationError: key "token_embedders" is required at location "model.text_field_embedder.""

Hi, I am not able to parse questions and answers and ground them to ConceptNet/CSKG after doing the necessary setup/installation. I am using the https://github.com/usc-isi-i2/cskg/blob/master/tutorial/Playing%20with%20grounding.ipynb notebook for this purpose. This notebook uses 'groundcn' and 'groundcskg' directories which are not present in the CSKG GitHub repo ( https://github.com/usc-isi-i2/cskg/).

2021-08-29 23:53:45,240 - INFO - faiss.loader - Loading faiss with AVX2 support.
2021-08-29 23:53:45,317 - INFO - faiss.loader - Successfully loaded faiss with AVX2 support.
2021-08-29 23:53:46,040 - INFO - allennlp.common.plugins - Plugin allennlp_models available
2021-08-29 23:53:46,603 - INFO - allennlp.common.file_utils - cache of https://s3-us-west-2.amazonaws.com/allennlp/models/coref-model-2018.02.05.tar.gz is up-to-date
2021-08-29 23:53:46,609 - INFO - allennlp.models.archival - loading archive file https://s3-us-west-2.amazonaws.com/allennlp/models/coref-model-2018.02.05.tar.gz from cache at /root/.allennlp/cache/b37780f4ed0365ac7b155e8b33e2c64c80658a2615a99eabe298a9980914bc92.1ad851a2740b5abf5c5806bc254ecfaa4f4865bcb09ce64d09bfab6db423a686
2021-08-29 23:53:46,610 - INFO - allennlp.models.archival - extracting archive file /root/.allennlp/cache/b37780f4ed0365ac7b155e8b33e2c64c80658a2615a99eabe298a9980914bc92.1ad851a2740b5abf5c5806bc254ecfaa4f4865bcb09ce64d09bfab6db423a686 to temp dir /tmp/tmpywzyqu_q
2021-08-29 23:53:47,333 - INFO - allennlp.common.params - dataset_reader.type = coref
2021-08-29 23:53:47,334 - INFO - allennlp.common.params - dataset_reader.max_instances = None
2021-08-29 23:53:47,334 - INFO - allennlp.common.params - dataset_reader.manual_distributed_sharding = False
2021-08-29 23:53:47,339 - INFO - allennlp.common.params - dataset_reader.manual_multiprocess_sharding = False
2021-08-29 23:53:47,339 - INFO - allennlp.common.params - dataset_reader.max_span_width = 10
2021-08-29 23:53:47,340 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.type = characters
2021-08-29 23:53:47,341 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.namespace = token_characters
2021-08-29 23:53:47,342 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.character_tokenizer = <allennlp.data.tokenizers.character_tokenizer.CharacterTokenizer object at 0x7fc78540f250>
2021-08-29 23:53:47,342 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.start_tokens = None
2021-08-29 23:53:47,343 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.end_tokens = None
2021-08-29 23:53:47,343 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.min_padding_length = 0
2021-08-29 23:53:47,344 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.token_min_padding_length = 0
/opt/conda/lib/python3.7/site-packages/allennlp/data/token_indexers/token_characters_indexer.py:60: UserWarning: You are using the default value (0) of `min_padding_length`, which can cause some subtle bugs (more info see https://github.com/allenai/allennlp/issues/1954). Strongly recommend to set a value, usually the maximum size of the convolutional layer size when using CnnEncoder.
  UserWarning,
2021-08-29 23:53:47,348 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.type = single_id
2021-08-29 23:53:47,349 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.namespace = tokens
2021-08-29 23:53:47,350 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.lowercase_tokens = False
2021-08-29 23:53:47,351 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.start_tokens = None
2021-08-29 23:53:47,353 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.end_tokens = None
2021-08-29 23:53:47,353 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.feature_name = text
2021-08-29 23:53:47,354 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.default_value = THIS IS A REALLY UNLIKELY VALUE THAT HAS TO BE A STRING
2021-08-29 23:53:47,354 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.token_min_padding_length = 0
2021-08-29 23:53:47,355 - INFO - allennlp.common.params - dataset_reader.wordpiece_modeling_tokenizer = None
2021-08-29 23:53:47,356 - INFO - allennlp.common.params - dataset_reader.max_sentences = None
2021-08-29 23:53:47,356 - INFO - allennlp.common.params - dataset_reader.remove_singleton_clusters = False
2021-08-29 23:53:47,357 - INFO - allennlp.common.params - dataset_reader.type = coref
2021-08-29 23:53:47,358 - INFO - allennlp.common.params - dataset_reader.max_instances = None
2021-08-29 23:53:47,358 - INFO - allennlp.common.params - dataset_reader.manual_distributed_sharding = False
2021-08-29 23:53:47,359 - INFO - allennlp.common.params - dataset_reader.manual_multiprocess_sharding = False
2021-08-29 23:53:47,360 - INFO - allennlp.common.params - dataset_reader.max_span_width = 10
2021-08-29 23:53:47,360 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.type = characters
2021-08-29 23:53:47,361 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.namespace = token_characters
2021-08-29 23:53:47,361 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.character_tokenizer = <allennlp.data.tokenizers.character_tokenizer.CharacterTokenizer object at 0x7fc78540f250>
2021-08-29 23:53:47,362 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.start_tokens = None
2021-08-29 23:53:47,363 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.end_tokens = None
2021-08-29 23:53:47,363 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.min_padding_length = 0
2021-08-29 23:53:47,363 - INFO - allennlp.common.params - dataset_reader.token_indexers.token_characters.token_min_padding_length = 0
2021-08-29 23:53:47,364 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.type = single_id
2021-08-29 23:53:47,366 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.namespace = tokens
2021-08-29 23:53:47,366 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.lowercase_tokens = False
2021-08-29 23:53:47,367 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.start_tokens = None
2021-08-29 23:53:47,367 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.end_tokens = None
2021-08-29 23:53:47,368 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.feature_name = text
2021-08-29 23:53:47,368 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.default_value = THIS IS A REALLY UNLIKELY VALUE THAT HAS TO BE A STRING
2021-08-29 23:53:47,370 - INFO - allennlp.common.params - dataset_reader.token_indexers.tokens.token_min_padding_length = 0
2021-08-29 23:53:47,370 - INFO - allennlp.common.params - dataset_reader.wordpiece_modeling_tokenizer = None
2021-08-29 23:53:47,371 - INFO - allennlp.common.params - dataset_reader.max_sentences = None
2021-08-29 23:53:47,371 - INFO - allennlp.common.params - dataset_reader.remove_singleton_clusters = False
2021-08-29 23:53:47,372 - INFO - allennlp.common.params - type = from_instances
2021-08-29 23:53:47,373 - INFO - allennlp.data.vocabulary - Loading token dictionary from /tmp/tmpywzyqu_q/vocabulary.
2021-08-29 23:53:47,420 - INFO - allennlp.common.params - model.type = coref
2021-08-29 23:53:47,422 - INFO - allennlp.common.params - model.regularizer = None
2021-08-29 23:53:47,422 - INFO - allennlp.common.params - model.text_field_embedder.type = basic
2021-08-29 23:53:47,423 - INFO - allennlp.models.archival - removing temporary unarchived model dir at /tmp/tmpywzyqu_q
---------------------------------------------------------------------------
KeyError                                  Traceback (most recent call last)
/opt/conda/lib/python3.7/site-packages/allennlp/common/params.py in pop(self, key, default, keep_as_dict)
    237             try:
--> 238                 value = self.params.pop(key)
    239             except KeyError:

KeyError: 'token_embedders'

During handling of the above exception, another exception occurred:

ConfigurationError                        Traceback (most recent call last)
<ipython-input-12-0f753a47034e> in <module>
----> 1 parse_trees=graphify.graphify_dataset(sentences)

~/cskg/grounding/graphify/graphify.py in graphify_dataset(sentences, output_file)
    275         spacy_parser = spacy.load(SPACY_MODEL, disable=['parser', 'tagger'])
    276 
--> 277     coref_predictor = Predictor.from_path(COREF_MODEL, cuda_device=CUDA_DEVICE)
    278     srl_predictor = Predictor.from_path(SRL_MODEL, cuda_device=CUDA_DEVICE)
    279 

/opt/conda/lib/python3.7/site-packages/allennlp/predictors/predictor.py in from_path(cls, archive_path, predictor_name, cuda_device, dataset_reader_to_load, frozen, import_plugins, overrides, **kwargs)
    364             plugins.import_plugins()
    365         return Predictor.from_archive(
--> 366             load_archive(archive_path, cuda_device=cuda_device, overrides=overrides),
    367             predictor_name,
    368             dataset_reader_to_load=dataset_reader_to_load,

/opt/conda/lib/python3.7/site-packages/allennlp/models/archival.py in load_archive(archive_file, cuda_device, overrides, weights_file)
    225             config.duplicate(), serialization_dir
    226         )
--> 227         model = _load_model(config.duplicate(), weights_path, serialization_dir, cuda_device)
    228 
    229         # Load meta.

/opt/conda/lib/python3.7/site-packages/allennlp/models/archival.py in _load_model(config, weights_path, serialization_dir, cuda_device)
    273         weights_file=weights_path,
    274         serialization_dir=serialization_dir,
--> 275         cuda_device=cuda_device,
    276     )
    277 

/opt/conda/lib/python3.7/site-packages/allennlp/models/model.py in load(cls, config, serialization_dir, weights_file, cuda_device)
    417             # get_model_class method, that recurses whenever it finds a from_archive model type.
    418             model_class = Model
--> 419         return model_class._load(config, serialization_dir, weights_file, cuda_device)
    420 
    421     def extend_embedder_vocab(self, embedding_sources_mapping: Dict[str, str] = None) -> None:

/opt/conda/lib/python3.7/site-packages/allennlp/models/model.py in _load(cls, config, serialization_dir, weights_file, cuda_device)
    316         remove_keys_from_params(model_params)
    317         model = Model.from_params(
--> 318             vocab=vocab, params=model_params, serialization_dir=serialization_dir
    319         )
    320 

/opt/conda/lib/python3.7/site-packages/allennlp/common/from_params.py in from_params(cls, params, constructor_to_call, constructor_to_inspect, **extras)
    591                     constructor_to_call=constructor_to_call,
    592                     constructor_to_inspect=constructor_to_inspect,
--> 593                     **extras,
    594                 )
    595             else:

/opt/conda/lib/python3.7/site-packages/allennlp/common/from_params.py in from_params(cls, params, constructor_to_call, constructor_to_inspect, **extras)
    619                 # This class has a constructor, so create kwargs for it.
    620                 constructor_to_inspect = cast(Callable[..., T], constructor_to_inspect)
--> 621                 kwargs = create_kwargs(constructor_to_inspect, cls, params, **extras)
    622 
    623             return constructor_to_call(**kwargs)  # type: ignore

/opt/conda/lib/python3.7/site-packages/allennlp/common/from_params.py in create_kwargs(constructor, cls, params, **extras)
    198         explicitly_set = param_name in params
    199         constructed_arg = pop_and_construct_arg(
--> 200             cls.__name__, param_name, annotation, param.default, params, **extras
    201         )
    202 

/opt/conda/lib/python3.7/site-packages/allennlp/common/from_params.py in pop_and_construct_arg(class_name, argument_name, annotation, default, params, **extras)
    305         return None
    306 
--> 307     return construct_arg(class_name, name, popped_params, annotation, default, **extras)
    308 
    309 

/opt/conda/lib/python3.7/site-packages/allennlp/common/from_params.py in construct_arg(class_name, argument_name, popped_params, annotation, default, **extras)
    339             elif isinstance(popped_params, dict):
    340                 popped_params = Params(popped_params)
--> 341             return annotation.from_params(params=popped_params, **subextras)
    342         elif not optional:
    343             # Not optional and not supplied, that's an error!

/opt/conda/lib/python3.7/site-packages/allennlp/common/from_params.py in from_params(cls, params, constructor_to_call, constructor_to_inspect, **extras)
    591                     constructor_to_call=constructor_to_call,
    592                     constructor_to_inspect=constructor_to_inspect,
--> 593                     **extras,
    594                 )
    595             else:

/opt/conda/lib/python3.7/site-packages/allennlp/common/from_params.py in from_params(cls, params, constructor_to_call, constructor_to_inspect, **extras)
    619                 # This class has a constructor, so create kwargs for it.
    620                 constructor_to_inspect = cast(Callable[..., T], constructor_to_inspect)
--> 621                 kwargs = create_kwargs(constructor_to_inspect, cls, params, **extras)
    622 
    623             return constructor_to_call(**kwargs)  # type: ignore

/opt/conda/lib/python3.7/site-packages/allennlp/common/from_params.py in create_kwargs(constructor, cls, params, **extras)
    198         explicitly_set = param_name in params
    199         constructed_arg = pop_and_construct_arg(
--> 200             cls.__name__, param_name, annotation, param.default, params, **extras
    201         )
    202 

/opt/conda/lib/python3.7/site-packages/allennlp/common/from_params.py in pop_and_construct_arg(class_name, argument_name, annotation, default, params, **extras)
    301         return result
    302 
--> 303     popped_params = params.pop(name, default) if default != _NO_DEFAULT else params.pop(name)
    304     if popped_params is None:
    305         return None

/opt/conda/lib/python3.7/site-packages/allennlp/common/params.py in pop(self, key, default, keep_as_dict)
    241                 if self.history:
    242                     msg += f' at location "{self.history}"'
--> 243                 raise ConfigurationError(msg)
    244         else:
    245             value = self.params.pop(key, default)

ConfigurationError: key "token_embedders" is required at location "model.text_field_embedder."
parse_trees

opened by jaleedkhan 1

Bump joblib from 1.0.0 to 1.2.0
Bumps joblib from 1.0.0 to 1.2.0.

Changelog

Sourced from joblib's changelog.

Release 1.2.0

Fix a security issue where eval(pre_dispatch) could potentially run arbitrary code. Now only basic numerics are supported. joblib/joblib#1327

Make sure that joblib works even when multiprocessing is not available, for instance with Pyodide joblib/joblib#1256

Avoid unnecessary warnings when workers and main process delete the temporary memmap folder contents concurrently. joblib/joblib#1263

Fix memory alignment bug for pickles containing numpy arrays. This is especially important when loading the pickle with mmap_mode != None as the resulting numpy.memmap object would not be able to correct the misalignment without performing a memory copy. This bug would cause invalid computation and segmentation faults with native code that would directly access the underlying data buffer of a numpy array, for instance C/C++/Cython code compiled with older GCC versions or some old OpenBLAS written in platform specific assembly. joblib/joblib#1254

Vendor cloudpickle 2.2.0 which adds support for PyPy 3.8+.

Vendor loky 3.3.0 which fixes several bugs including:

robustly forcibly terminating worker processes in case of a crash (joblib/joblib#1269);

avoiding leaking worker processes in case of nested loky parallel calls;

reliability spawn the correct number of reusable workers.

Release 1.1.0

Fix byte order inconsistency issue during deserialization using joblib.load in cross-endian environment: the numpy arrays are now always loaded to use the system byte order, independently of the byte order of the system that serialized the pickle. joblib/joblib#1181

Fix joblib.Memory bug with the ignore parameter when the cached function is a decorated function.

... (truncated)

Commits

5991350 Release 1.2.0

3fa2188 MAINT cleanup numpy warnings related to np.matrix in tests (#1340)

cea26ff CI test the future loky-3.3.0 branch (#1338)

8aca6f4 MAINT: remove pytest.warns(None) warnings in pytest 7 (#1264)

067ed4f XFAIL test_child_raises_parent_exits_cleanly with multiprocessing (#1339)

ac4ebd5 MAINT add back pytest warnings plugin (#1337)

a23427d Test child raises parent exits cleanly more reliable on macos (#1335)

ac09691 [MAINT] various test updates (#1334)

4a314b1 Vendor loky 3.2.0 (#1333)

bdf47e9 Make test_parallel_with_interactively_defined_functions_default_backend timeo...

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dependencies
opened by dependabot[bot] 0
Bump protobuf from 3.15.0 to 3.18.3
Bumps protobuf from 3.15.0 to 3.18.3.

Release notes

Sourced from protobuf's releases.

Protocol Buffers v3.18.3

C++

Reduce memory consumption of MessageSet parsing

This release addresses a Security Advisory for C++ and Python users

Protocol Buffers v3.16.1

Java

Improve performance characteristics of UnknownFieldSet parsing (#9371)

Protocol Buffers v3.18.2

Java

Improve performance characteristics of UnknownFieldSet parsing (#9371)

Protocol Buffers v3.18.1

Python

Update setup.py to reflect that we now require at least Python 3.5 (#8989)

Performance fix for DynamicMessage: force GetRaw() to be inlined (#9023)

Ruby

Update ruby_generator.cc to allow proto2 imports in proto3 (#9003)

Protocol Buffers v3.18.0

C++

Fix warnings raised by clang 11 (#8664)

Make StringPiece constructible from std::string_view (#8707)

Add missing capability attributes for LLVM 12 (#8714)

Stop using std::iterator (deprecated in C++17). (#8741)

Move field_access_listener from libprotobuf-lite to libprotobuf (#8775)

Fix #7047 Safely handle setlocale (#8735)

Remove deprecated version of SetTotalBytesLimit() (#8794)

Support arena allocation of google::protobuf::AnyMetadata (#8758)

Fix undefined symbol error around SharedCtor() (#8827)

Fix default value of enum(int) in json_util with proto2 (#8835)

Better Smaller ByteSizeLong

Introduce event filters for inject_field_listener_events

Reduce memory usage of DescriptorPool

For lazy fields copy serialized form when allowed.

Re-introduce the InlinedStringField class

v2 access listener

Reduce padding in the proto's ExtensionRegistry map.

GetExtension performance optimizations

Make tracker a static variable rather than call static functions

Support extensions in field access listener

Annotate MergeFrom for field access listener

Fix incomplete types for field access listener

Add map_entry/new_map_entry to SpecificField in MessageDifferencer. They record the map items which are different in MessageDifferencer's reporter.

Reduce binary size due to fieldless proto messages

TextFormat: ParseInfoTree supports getting field end location in addition to start.

... (truncated)

Commits

a902b39 No-op whitespace change

ae62acd Updating version.json and repo version numbers to: 18.3

f43ac49 Merge pull request #10542 from deannagarcia/3.18.x

9efdf55 Add missing includes

d1635e1 Apply patch

5b37c91 Update version.json with "lts": true (#10534)

c39d622 Merge pull request #10529 from protocolbuffers/deannagarcia-patch-5

f77d3b6 Update version.json

8178b06 Merge pull request #10503 from deannagarcia/3.18.x

24ca839 Add version file

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dependencies
opened by dependabot[bot] 0
Bump mistune from 0.8.4 to 2.0.3
Bumps mistune from 0.8.4 to 2.0.3.

Release notes

Sourced from mistune's releases.

Version 2.0.2

Fix escape_url via lepture/mistune#295

Version 2.0.1

Fix XSS for image link syntax.

Version 2.0.0

First release of Mistune v2.

Version 2.0.0 RC1

In this release, we have a Security Fix for harmful links.

Version 2.0.0 Alpha 1

This is the first release of v2. An alpha version for users to have a preview of the new mistune.

Changelog

Sourced from mistune's changelog.

Changelog

Here is the full history of mistune v2.

Version 2.0.4

Released on Jul 15, 2022 Fix url plugin in <a> tag Fix * formatting
Version 2.0.3

Released on Jun 27, 2022

Fix table plugin

Security fix for CVE-2022-34749

Version 2.0.2

Released on Jan 14, 2022 Fix escape_url
Version 2.0.1

Released on Dec 30, 2021

XSS fix for image link syntax.

Version 2.0.0

Released on Dec 5, 2021 This is the first non-alpha release of mistune v2.
Version 2.0.0rc1

Released on Feb 16, 2021

Version 2.0.0a6

</tr></table>

... (truncated)

Commits

3f422f1 Version bump 2.0.3

a6d4321 Fix asteris emphasis regex CVE-2022-34749

5638e46 Merge pull request #307 from jieter/patch-1

0eba471 Fix typo in guide.rst

61e9337 Fix table plugin

76dec68 Add documentation for renderer heading when TOC enabled

799cd11 Version bump 2.0.2

babb0cf Merge pull request #295 from dairiki/bug.escape_url

fc2cd53 Make mistune.util.escape_url less aggressive

3e8d352 Version bump 2.0.1

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dependencies
opened by dependabot[bot] 0
Bump lxml from 4.6.5 to 4.9.1
Bumps lxml from 4.6.5 to 4.9.1.

Changelog

Sourced from lxml's changelog.

4.9.1 (2022-07-01)

Bugs fixed

A crash was resolved when using iterwalk() (or canonicalize()) after parsing certain incorrect input. Note that iterwalk() can crash on valid input parsed with the same parser after failing to parse the incorrect input.

4.9.0 (2022-06-01)

Bugs fixed

GH#341: The mixin inheritance order in lxml.html was corrected. Patch by xmo-odoo.

Other changes

Built with Cython 0.29.30 to adapt to changes in Python 3.11 and 3.12.

Wheels include zlib 1.2.12, libxml2 2.9.14 and libxslt 1.1.35 (libxml2 2.9.12+ and libxslt 1.1.34 on Windows).

GH#343: Windows-AArch64 build support in Visual Studio. Patch by Steve Dower.

4.8.0 (2022-02-17)

Features added

GH#337: Path-like objects are now supported throughout the API instead of just strings. Patch by Henning Janssen.

The ElementMaker now supports QName values as tags, which always override the default namespace of the factory.

Bugs fixed

GH#338: In lxml.objectify, the XSI float annotation "nan" and "inf" were spelled in lower case, whereas XML Schema datatypes define them as "NaN" and "INF" respectively.

... (truncated)

Commits

d01872c Prevent parse failure in new test from leaking into later test runs.

d65e632 Prepare release of lxml 4.9.1.

86368e9 Fix a crash when incorrect parser input occurs together with usages of iterwa...

50c2764 Delete unused Travis CI config and reference in docs (GH-345)

8f0bf2d Try to speed up the musllinux AArch64 build by splitting the different CPytho...

b9f7074 Remove debug print from test.

b224e0f Try to install 'xz' in wheel builds, if available, since it's now needed to e...

897ebfa Update macOS deployment target version from 10.14 to 10.15 since 10.14 starts...

853c9e9 Prepare release of 4.9.0.

d3f77e6 Add a test for https://bugs.launchpad.net/lxml/+bug/1965070 leaving out the a...

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dependencies
opened by dependabot[bot] 0
Bump certifi from 2020.12.5 to 2022.12.7
Bumps certifi from 2020.12.5 to 2022.12.7.

Commits

9e9e840 2022.12.07

b81bdb2 2022.09.24

939a28f 2022.09.14

aca828a 2022.06.15.2

de0eae1 Only use importlib.resources's new files() / Traversable API on Python ≥3.11 ...

b8eb5e9 2022.06.15.1

47fb7ab Fix deprecation warning on Python 3.11 (#199)

b0b48e0 fixes #198 -- update link in license

9d514b4 2022.06.15

4151e88 Add py.typed to MANIFEST.in to package in sdist (#196)

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dependencies
opened by dependabot[bot] 0
Bump certifi from 2019.11.28 to 2022.12.7 in /grounding/groundcn
Bumps certifi from 2019.11.28 to 2022.12.7.

Commits

9e9e840 2022.12.07

b81bdb2 2022.09.24

939a28f 2022.09.14

aca828a 2022.06.15.2

de0eae1 Only use importlib.resources's new files() / Traversable API on Python ≥3.11 ...

b8eb5e9 2022.06.15.1

47fb7ab Fix deprecation warning on Python 3.11 (#199)

b0b48e0 fixes #198 -- update link in license

9d514b4 2022.06.15

4151e88 Add py.typed to MANIFEST.in to package in sdist (#196)

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dependencies
opened by dependabot[bot] 0
Bump certifi from 2019.11.28 to 2022.12.7 in /grounding/groundcskg
Bumps certifi from 2019.11.28 to 2022.12.7.

Commits

9e9e840 2022.12.07

b81bdb2 2022.09.24

939a28f 2022.09.14

aca828a 2022.06.15.2

de0eae1 Only use importlib.resources's new files() / Traversable API on Python ≥3.11 ...

b8eb5e9 2022.06.15.1

47fb7ab Fix deprecation warning on Python 3.11 (#199)

b0b48e0 fixes #198 -- update link in license

9d514b4 2022.06.15

4151e88 Add py.typed to MANIFEST.in to package in sdist (#196)

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dependencies
opened by dependabot[bot] 0
Bump pillow from 9.0.1 to 9.3.0
Bumps pillow from 9.0.1 to 9.3.0.

Release notes

Sourced from pillow's releases.

9.3.0

https://pillow.readthedocs.io/en/stable/releasenotes/9.3.0.html

Changes

Initialize libtiff buffer when saving #6699 [@radarhere]

Limit SAMPLESPERPIXEL to avoid runtime DOS #6700 [@wiredfool]

Inline fname2char to fix memory leak #6329 [@nulano]

Fix memory leaks related to text features #6330 [@nulano]

Use double quotes for version check on old CPython on Windows #6695 [@hugovk]

GHA: replace deprecated set-output command with GITHUB_OUTPUT file #6697 [@nulano]

Remove backup implementation of Round for Windows platforms #6693 [@cgohlke]

Upload fribidi.dll to GitHub Actions #6532 [@nulano]

Fixed set_variation_by_name offset #6445 [@radarhere]

Windows build improvements #6562 [@nulano]

Fix malloc in _imagingft.c:font_setvaraxes #6690 [@cgohlke]

Only use ASCII characters in C source file #6691 [@cgohlke]

Release Python GIL when converting images using matrix operations #6418 [@hmaarrfk]

Added ExifTags enums #6630 [@radarhere]

Do not modify previous frame when calculating delta in PNG #6683 [@radarhere]

Added support for reading BMP images with RLE4 compression #6674 [@npjg]

Decode JPEG compressed BLP1 data in original mode #6678 [@radarhere]

pylint warnings #6659 [@marksmayo]

Added GPS TIFF tag info #6661 [@radarhere]

Added conversion between RGB/RGBA/RGBX and LAB #6647 [@radarhere]

Do not attempt normalization if mode is already normal #6644 [@radarhere]

Fixed seeking to an L frame in a GIF #6576 [@radarhere]

Consider all frames when selecting mode for PNG save_all #6610 [@radarhere]

Don't reassign crc on ChunkStream close #6627 [@radarhere]

Raise a warning if NumPy failed to raise an error during conversion #6594 [@radarhere]

Only read a maximum of 100 bytes at a time in IMT header #6623 [@radarhere]

Show all frames in ImageShow #6611 [@radarhere]

Allow FLI palette chunk to not be first #6626 [@radarhere]

If first GIF frame has transparency for RGB_ALWAYS loading strategy, use RGBA mode #6592 [@radarhere]

Round box position to integer when pasting embedded color #6517 [@radarhere]

Removed EXIF prefix when saving WebP #6582 [@radarhere]

Pad IM palette to 768 bytes when saving #6579 [@radarhere]

Added DDS BC6H reading #6449 [@ShadelessFox]

Added support for opening WhiteIsZero 16-bit integer TIFF images #6642 [@JayWiz]

Raise an error when allocating translucent color to RGB palette #6654 [@jsbueno]

Moved mode check outside of loops #6650 [@radarhere]

Added reading of TIFF child images #6569 [@radarhere]

Improved ImageOps palette handling #6596 [@PososikTeam]

Defer parsing of palette into colors #6567 [@radarhere]

Apply transparency to P images in ImageTk.PhotoImage #6559 [@radarhere]

Use rounding in ImageOps contain() and pad() #6522 [@bibinhashley]

Fixed GIF remapping to palette with duplicate entries #6548 [@radarhere]

Allow remap_palette() to return an image with less than 256 palette entries #6543 [@radarhere]

Corrected BMP and TGA palette size when saving #6500 [@radarhere]

... (truncated)

Changelog

Sourced from pillow's changelog.

9.3.0 (2022-10-29)

Limit SAMPLESPERPIXEL to avoid runtime DOS #6700 [wiredfool]

Initialize libtiff buffer when saving #6699 [radarhere]

Inline fname2char to fix memory leak #6329 [nulano]

Fix memory leaks related to text features #6330 [nulano]

Use double quotes for version check on old CPython on Windows #6695 [hugovk]

Remove backup implementation of Round for Windows platforms #6693 [cgohlke]

Fixed set_variation_by_name offset #6445 [radarhere]

Fix malloc in _imagingft.c:font_setvaraxes #6690 [cgohlke]

Release Python GIL when converting images using matrix operations #6418 [hmaarrfk]

Added ExifTags enums #6630 [radarhere]

Do not modify previous frame when calculating delta in PNG #6683 [radarhere]

Added support for reading BMP images with RLE4 compression #6674 [npjg, radarhere]

Decode JPEG compressed BLP1 data in original mode #6678 [radarhere]

Added GPS TIFF tag info #6661 [radarhere]

Added conversion between RGB/RGBA/RGBX and LAB #6647 [radarhere]

Do not attempt normalization if mode is already normal #6644 [radarhere]

... (truncated)

Commits

d594f4c Update CHANGES.rst [ci skip]

909dc64 9.3.0 version bump

1a51ce7 Merge pull request #6699 from hugovk/security-libtiff_buffer

2444cdd Merge pull request #6700 from hugovk/security-samples_per_pixel-sec

744f455 Added release notes

0846bfa Add to release notes

799a6a0 Fix linting

00b25fd Hide UserWarning in logs

05b175e Tighter test case

13f2c5a Prevent DOS with large SAMPLESPERPIXEL in Tiff IFD

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dependencies
opened by dependabot[bot] 0
Error to get the relation label

I'm using the python kgtk library to work with the cskg.tsv file. When I execute the following query: kgtk(""" query -i cskg.tsv --match '(n1)-[r]->(n2)' --where 'n1.label="bicycle"' --return 'n1.label, n2.label, r.relation' --limit 3 """) I got the values node1;label | node2;label | relation -- | -- | -- bicycle | bicycle shop | /r/AtLocation bicycle | garage | /r/AtLocation bicycle | lab | /r/AtLocation

but when I change to kgtk(""" query -i cskg.tsv --match '(n1)-[r]->(n2)' --where 'n1.label="bicycle"' --return 'n1.label, n2.label, r.label' --limit 3 """) I got the following error: `Exception in thread background thread for pid 81394: Traceback (most recent call last): File "/Users/u/opt/anaconda3/envs/kgtk-env/lib/python3.9/threading.py", line 980, in _bootstrap_inner self.run() File "/Users/u/opt/anaconda3/envs/kgtk-env/lib/python3.9/threading.py", line 917, in run self._target(*self._args, **self._kwargs) File "/Users/u/opt/anaconda3/envs/kgtk-env/lib/python3.9/site-packages/sh.py", line 1641, in wrap fn(*rgs, **kwargs) File "/Users/u/opt/anaconda3/envs/kgtk-env/lib/python3.9/site-packages/sh.py", line 2569, in background_thread handle_exit_code(exit_code) File "/Users/u/opt/anaconda3/envs/kgtk-env/lib/python3.9/site-packages/sh.py", line 2269, in fn return self.command.handle_command_exit_code(exit_code) File "/Users/u/opt/anaconda3/envs/kgtk-env/lib/python3.9/site-packages/sh.py", line 869, in handle_command_exit_code raise exc sh.ErrorReturnCode_1:

RAN: /bin/bash -c 'kgtk query -i cskg.tsv --match '"'"'(n1)-[r]->(n2)'"'"' --where '"'"'n1.label="bicycle"'"'"' --return '"'"'n1.label, n2.label, r.label'"'"' --limit 3'

STDOUT:

STDERR:

no such column: graph_1_c1.label`

Is there any way to get the relation's label? When I run the query without the return parameter, I see a column with the label.

opened by EricFerreiraS 0
Bump nbconvert from 6.0.7 to 6.5.1
Bumps nbconvert from 6.0.7 to 6.5.1.

Release notes

Sourced from nbconvert's releases.

Release 6.5.1

No release notes provided.

6.5.0

What's Changed

Drop dependency on testpath. by @anntzer in jupyter/nbconvert#1723

Adopt pre-commit by @blink1073 in jupyter/nbconvert#1744

Add pytest settings and handle warnings by @blink1073 in jupyter/nbconvert#1745

Apply Autoformatters by @blink1073 in jupyter/nbconvert#1746

Add git-blame-ignore-revs by @blink1073 in jupyter/nbconvert#1748

Update flake8 config by @blink1073 in jupyter/nbconvert#1749

support bleach 5, add packaging and tinycss2 dependencies by @bollwyvl in jupyter/nbconvert#1755

[pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in jupyter/nbconvert#1752

update cli example by @leahecole in jupyter/nbconvert#1753

Clean up pre-commit by @blink1073 in jupyter/nbconvert#1757

Clean up workflows by @blink1073 in jupyter/nbconvert#1750

New Contributors

@pre-commit-ci made their first contribution in jupyter/nbconvert#1752

Full Changelog: https://github.com/jupyter/nbconvert/compare/6.4.5...6.5

6.4.3

What's Changed

Add section to customizing showing how to use template inheritance by @stefanv in jupyter/nbconvert#1719

Remove ipython genutils by @rgs258 in jupyter/nbconvert#1727

Update changelog for 6.4.3 by @blink1073 in jupyter/nbconvert#1728

New Contributors

@stefanv made their first contribution in jupyter/nbconvert#1719

@rgs258 made their first contribution in jupyter/nbconvert#1727

Full Changelog: https://github.com/jupyter/nbconvert/compare/6.4.2...6.4.3

6.4.0

What's Changed

Optionally speed up validation by @gwincr11 in jupyter/nbconvert#1672

Adding missing div compared to JupyterLab DOM structure by @SylvainCorlay in jupyter/nbconvert#1678

Allow passing extra args to code highlighter by @yuvipanda in jupyter/nbconvert#1683

Prevent page breaks in outputs when printing by @SylvainCorlay in jupyter/nbconvert#1679

Add collapsers to template by @SylvainCorlay in jupyter/nbconvert#1689

Fix recent pandoc latex tables by adding calc and array (#1536, #1566) by @cgevans in jupyter/nbconvert#1686

Add an invalid notebook error by @gwincr11 in jupyter/nbconvert#1675

Fix typos in execute.py by @TylerAnderson22 in jupyter/nbconvert#1692

Modernize latex greek math handling (partially fixes #1673) by @cgevans in jupyter/nbconvert#1687

Fix use of deprecated API and update test matrix by @blink1073 in jupyter/nbconvert#1696

Update nbconvert_library.ipynb by @letterphile in jupyter/nbconvert#1695

Changelog for 6.4 by @blink1073 in jupyter/nbconvert#1697

New Contributors

... (truncated)

Commits

7471b75 Release 6.5.1

c1943e0 Fix pre-commit

8685e93 Fix tests

0abf290 Run black and prettier

418d545 Run test on 6.x branch

bef65d7 Convert input to string prior to escape HTML

0818628 Check input type before escaping

b206470 GHSL-2021-1017, GHSL-2021-1020, GHSL-2021-1021

a03cbb8 GHSL-2021-1026, GHSL-2021-1025

48fe71e GHSL-2021-1024

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dependencies
opened by dependabot[bot] 0