Python Circular-genomes Resources

Circular genome tools (cgt) A sage package for working with circular genomes represented by signed or unsigned permutations. It includes tools for con

Monte Carlo Simulation to the Paper A High-Level Fusion Scheme for Circular Quantities published at the 20th International Conference on Advanced Robotics

Data Analytics performed on On genomes and Genetics dataset to predict genetic disorder and disorder subclass. DONE by TEAM SIGMA!

CHERRY is a python library for predicting the interactions between viral and prokaryotic genomes. CHERRY is based on a deep learning model, which consists of a graph convolutional encoder and a link prediction decoder.

Classification of Long Sequential Data using Circular Dilated Convolutional Neural Networks arXiv preprint: https://arxiv.org/abs/2201.02143. Architec

Description Summary of phylogenomic methods and analyses used in "Immunogenicity of convalescent and vaccinated sera against clinical isolates of ance

Plasmidviewer Plasmidviewer is a Python library to visualize plasmid maps from GenBank. This library provides only the function to visualize circular

BEAR Overview This repository contains code associated with the preprint A generative nonparametric Bayesian model for whole genomes (2021), which pro

jupiter Generate "Jupiter" plots for circular genomes Description Python scripts to generate plots from ViennaRNA output. Written in "pidgin" python w

Selene is a Python library and command line interface for training deep neural networks from biological sequence data such as genomes.

DeepConsensus DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS)

Pingouin is an open-source statistical package written in Python 3 and based mostly on Pandas and NumPy. Some of its main features are listed below. F

Pycycle: Find and fix circular imports in python projects Pycycle is an experimental project that aims to help python developers fix their circular de