21 Repositories
Python clinical-trials Libraries
Context-Sensitive Misspelling Correction of Clinical Text via Conditional Independence, CHIL 2022
cim-misspelling Pytorch implementation of Context-Sensitive Spelling Correction of Clinical Text via Conditional Independence, CHIL 2022. This model (
11 Dec 19, 2022
Based on the given clinical dataset, Predict whether the patient having Heart Disease or Not having Heart Disease
Heart_Disease_Classification Based on the given clinical dataset, Predict whether the patient having Heart Disease or Not having Heart Disease Dataset
1 Jan 30, 2022
Awesome Transformers in Medical Imaging
This repo supplements our Survey on Transformers in Medical Imaging Fahad Shamshad, Salman Khan, Syed Waqas Zamir, Muhammad Haris Khan, Munawar Hayat,
666 Jan 6, 2023
Exploration of some patients clinical variables.
Answer_ALS_clinical_data Exploration of some patients clinical variables. All the clinical / metadata data is available here: https://data.answerals.o
1 Jan 20, 2022
Get a Grip! - A robotic system for remote clinical environments.
Get a Grip! Within clinical environments, sterilization is an essential procedure for disinfecting surgical and medical instruments. For our engineeri
1 Jan 5, 2022
Resources related to our paper "CLIN-X: pre-trained language models and a study on cross-task transfer for concept extraction in the clinical domain"
CLIN-X (CLIN-X-ES) & (CLIN-X-EN) This repository holds the companion code for the system reported in the paper: "CLIN-X: pre-trained language models a
4 Dec 5, 2022
RCT-ART is an NLP pipeline built with spaCy for converting clinical trial result sentences into tables through jointly extracting intervention, outcome and outcome measure entities and their relations.
Randomised controlled trial abstract result tabulator RCT-ART is an NLP pipeline built with spaCy for converting clinical trial result sentences into
2 Sep 16, 2022
Dataset for the Research2Clinics @ NeurIPS 2021 Paper: What Do You See in this Patient? Behavioral Testing of Clinical NLP Models
Behavioral Testing of Clinical NLP Models This repository contains code for testing the behavior of clinical prediction models based on patient letter
2 Sep 20, 2022
Behavioral Testing of Clinical NLP Models
Behavioral Testing of Clinical NLP Models This repository contains code for testing the behavior of clinical prediction models based on patient letter
2 Sep 20, 2022
Clinica is a software platform for clinical research studies involving patients with neurological and psychiatric diseases and the acquisition of multimodal data
Clinica Software platform for clinical neuroimaging studies Homepage | Documentation | Paper | Forum | See also: AD-ML, AD-DL ClinicaDL About The Proj
165 Dec 29, 2022
An open source recipe book from the awesome staff of Clinical Genomics
meatballs An open source recipe book from the awesome staff of Clinical Genomics.
2 Dec 7, 2021
The Research PACS on AWS solution facilitates researchers' access medical images stored in the clinical PACS in a secure and seamless manner
Research PACS on AWS Challenge to solve Solution presentation Deploy the solution Further reading Releases License Challenge to solve The rise of new
23 Sep 9, 2022
Using Clinical Drug Representations for Improving Mortality and Length of Stay Predictions
Using Clinical Drug Representations for Improving Mortality and Length of Stay Predictions Usage Clone the code to local. https://github.com/tanlab/MI
3 Oct 18, 2022
The OHSDI OMOP Common Data Model allows for the systematic analysis of healthcare observational databases.
The OHSDI OMOP Common Data Model allows for the systematic analysis of healthcare observational databases.
14 Jan 2, 2023
Python suite to construct benchmark machine learning datasets from the MIMIC-III clinical database.
MIMIC-III Benchmarks Python suite to construct benchmark machine learning datasets from the MIMIC-III clinical database. Currently, the benchmark data
6 Jan 2, 2023
ml4h is a toolkit for machine learning on clinical data of all kinds including genetics, labs, imaging, clinical notes, and more
ml4h is a toolkit for machine learning on clinical data of all kinds including genetics, labs, imaging, clinical notes, and more
65 Dec 20, 2022
A project for developing transformer-based models for clinical relation extraction
Clinical Relation Extration with Transformers Aim This package is developed for researchers easily to use state-of-the-art transformers models for ext
101 Dec 19, 2022
UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus
UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus General info This is
71 Oct 25, 2022
Chinese clinical named entity recognition using pre-trained BERT model
Chinese clinical named entity recognition (CNER) using pre-trained BERT model Introduction Code for paper Chinese clinical named entity recognition wi
109 Dec 14, 2022
PRAnCER is a web platform that enables the rapid annotation of medical terms within clinical notes.
PRAnCER (Platform enabling Rapid Annotation for Clinical Entity Recognition) is a web platform that enables the rapid annotation of medical terms within clinical notes. A user can highlight spans of text and quickly map them to concepts in large vocabularies within a single, intuitive platform.
39 Nov 14, 2022
A large-scale dataset of both raw MRI measurements and clinical MRI images
fastMRI is a collaborative research project from Facebook AI Research (FAIR) and NYU Langone Health to investigate the use of AI to make MRI scans faster. NYU Langone Health has released fully anonymized knee and brain MRI datasets that can be downloaded from the fastMRI dataset page. Publications associated with the fastMRI project can be found at the end of this README.
907 Jan 4, 2023