Python Equivariant-imaging Resources

bartpy Python bindings for BART. Overview This repo contains code to generate an updated Python wrapper for the Berkeley Advance Reconstruction Toolbo

Mask-RCNN on Mycobacterium tuberculosis This is an example of object detection on Mycobacterium Tuberculosis using Mask RCNN. Implement of Mask R-CNN

Mask-RCNN on Mycobacterium tuberculosis This is an example of object detection on Mycobacterium Tuberculosis using Mask RCNN. Implement of Mask R-CNN

Topographic Variational Autoencoder Paper: https://arxiv.org/abs/2109.01394 Getting Started Install requirements with Anaconda: conda env create -f en

WobblyStitcher Introduction A scalable implementation of WobblyStitcher Dependencies $ python -m pip install numpy scikit-image Visualization ImageJ

Medical image preprocessing and augmentation toolkit for deep learning. Part of the PyTorch Ecosystem.

You Only Hypothesize Once: Point Cloud Registration with Rotation-equivariant Descriptors In this paper, we propose a novel local descriptor-based fra

ml4h is a toolkit for machine learning on clinical data of all kinds including genetics, labs, imaging, clinical notes, and more

Trajectory Prediction using Equivariant Continuous Convolution (ECCO) This is the codebase for the ICLR 2021 paper Trajectory Prediction using Equivar

Deep Optics for Single-shot High-dynamic-range Imaging Code associated with the paper "Deep Optics for Single-shot High-dynamic-range Imaging" CVPR, 2

Geometric Vector Perceptron Code to accompany Learning from Protein Structure with Geometric Vector Perceptrons by B Jing, S Eismann, P Suriana, RJL T

NCRF Prerequisites Data Whole slide images Annotations Patch images Model Training Testing Tissue mask Probability map Tumor localization FROC evaluat

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening Introduction This is an implementation of the model used for breast

UNet for segmenting salt deposits from seismic images with PyTorch. General We, tugstugi and xuyuan, have participated in the Kaggle competition TGS S

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

What is nnDetection? Simultaneous localisation and categorization of objects in medical images, also referred to as medical object detection, is of hi

LieTransformer This repository contains the implementation of the LieTransformer used for experiments in the paper LieTransformer: Equivariant Self-At

Vector Neurons: A General Framework for SO(3)-Equivariant Networks Created by Congyue Deng, Or Litany, Yueqi Duan, Adrien Poulenard, Andrea Tagliasacc

Welcome to MedicalTorch MedicalTorch is an open-source framework for PyTorch, implementing an extensive set of loaders, pre-processors and datasets fo

CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT CheXbert is an accurate, automated dee

Domain Generalization for Medical Imaging Classification with Linear Dependency Regularization The code release of paper 'Domain Generalization for Me

Antialiased CNNs [Project Page] [Paper] [Talk] Making Convolutional Networks Shift-Invariant Again Richard Zhang. In ICML, 2019. Quick & easy start Ru

ReDet: A Rotation-equivariant Detector for Aerial Object Detection ReDet: A Rotation-equivariant Detector for Aerial Object Detection (CVPR2021), Jiam

EGNN - Pytorch Implementation of E(n)-Equivariant Graph Neural Networks, in Pytorch. May be eventually used for Alphafold2 replication. This

E(n)-Equivariant Transformer (wip) Implementation of E(n)-Equivariant Transformer, which extends the ideas from Welling's E(n)-Equivariant G

InVesalius InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesaliu

Medical-Transformer Pytorch Code for the paper "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" About this repo: This repo

Meshroom is a free, open-source 3D Reconstruction Software based on the AliceVision Photogrammetric Computer Vision framework. Learn more details abou

LieTransformer This repository contains the implementation of the LieTransformer used for experiments in the paper LieTransformer: Equivariant self-at

SE3 Transformer - Pytorch Implementation of SE3-Transformers for Equivariant Self-Attention, in Pytorch. May be needed for replicating Alphafold2 resu

Lie Transformer - Pytorch (wip) Implementation of Lie Transformer, Equivariant Self-Attention, in Pytorch. Only the SE3 version will be present in thi

Documentation: https://raamana.github.io/neuropredict/ News As of v0.6, neuropredict now supports regression applications i.e. predicting continuous t

nilearn Nilearn enables approachable and versatile analyses of brain volumes. It provides statistical and machine-learning tools, with instructive doc

Pillow Python Imaging Library (Fork) Pillow is the friendly PIL fork by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lund