Python Genomics-data Resources

python-tabulate Pretty-print tabular data in Python, a library and a command-line utility. The main use cases of the library are: printing small table

lazydata: scalable data dependencies lazydata is a minimalist library for including data dependencies into Python projects. Problem: Keeping all data

mongo-connector The mongo-connector project originated as a MongoDB mongo-labs project and is now community-maintained under the custody of YouGov, Pl

AWS Data Wrangler Pandas on AWS Easy integration with Athena, Glue, Redshift, Timestream, QuickSight, Chime, CloudWatchLogs, DynamoDB, EMR, SecretMana

PyPika - Python Query Builder Abstract What is PyPika? PyPika is a Python API for building SQL queries. The motivation behind PyPika is to provide a s

dataset: databases for lazy people In short, dataset makes reading and writing data in databases as simple as reading and writing JSON files. Read the

pandas-gbq pandas-gbq is a package providing an interface to the Google BigQuery API from pandas Installation Install latest release version via conda

the problem What directory should your app use for storing user data? If running on macOS, you should use: ~/Library/Application Support/AppName If

Valideer Lightweight data validation and adaptation library for Python. At a Glance: Supports both validation (check if a value is valid) and adaptati

Schematics Python Data Structures for Humans™. About Project documentation: https://schematics.readthedocs.io/en/latest/ Schematics is a Python librar

typical: Python's Typing Toolkit Introduction Typical is a library devoted to runtime analysis, inference, validation, and enforcement of Python types

Validr A simple, fast, extensible python library for data validation. Simple and readable schema 10X faster than jsonschema, 40X faster than schematic

validators Python data validation for Humans. Python has all kinds of data validation tools, but every one of them seems to require defining a schema

CONTRIBUTIONS ONLY What does this mean? I do not have time to fix issues myself. The only way fixes or new features will be added is by people submitt

Cerberus Cerberus is a lightweight and extensible data validation library for Python. v = Validator({'name': {'type': 'string'}}) v.validate({

pydantic Data validation and settings management using Python type hinting. Fast and extensible, pydantic plays nicely with your linters/IDE/brain. De

Protocol Buffers - Google's data interchange format Copyright 2008 Google Inc. https://developers.google.com/protocol-buffers/ Overview Protocol Buffe

SQL Explorer SQL Explorer aims to make the flow of data between people fast, simple, and confusion-free. It is a Django-based application that you can

jsonfield jsonfield is a reusable model field that allows you to store validated JSON, automatically handling serialization to and from the database.

django-import-export django-import-export is a Django application and library for importing and exporting data with included admin integration. Featur

Flask-Excel - Let you focus on data, instead of file formats Support the project If your company has embedded pyexcel and its components into a revenu

Django Smuggler Django Smuggler is a pluggable application for Django Web Framework to easily dump/load fixtures via the automatically-generated admin

starlette context Middleware for Starlette that allows you to store and access the context data of a request. Can be used with logging so logs automat

GoAccess What is it? GoAccess is an open source real-time web log analyzer and interactive viewer that runs in a terminal on *nix systems or through y

lazynlp A straightforward library that allows you to crawl, clean up, and deduplicate webpages to create massive monolingual datasets. Using this libr

Parsel Parsel is a BSD-licensed Python library to extract and remove data from HTML and XML using XPath and CSS selectors, optionally combined with re

IMDbPY is a Python package for retrieving and managing the data of the IMDb movie database about movies, people and companies. Revamp notice Starting

TuShare Tushare Pro版已发布，请访问新的官网了解和查询数据接口！ https://tushare.pro TuShare是实现对股票/期货等金融数据从数据采集、清洗加工 到 数据存储过程的工具，满足金融量化分析师和学习数据分析的人在数据获取方面的需求，它的特点是数据覆盖范围广，接口

Best-of Machine Learning with Python 🏆 A ranked list of awesome machine learning Python libraries. Updated weekly. This curated list contains 840 awe

Mockoon Mockoon is the easiest and quickest way to run mock APIs locally. No remote deployment, no account required, open source. It has been built wi

This script is useful for downloading stock market data for a wide range of companies specified by their respective tickers. The script reads in the d

Best-of Python 🏆 A ranked list of awesome Python open-source libraries & tools. Updated weekly. This curated list contains 230 awesome open-source pr

DeiT: Data-efficient Image Transformers This repository contains PyTorch evaluation code, training code and pretrained models for DeiT (Data-Efficient

BudgetML is perfect for practitioners who would like to quickly deploy their models to an endpoint, but not waste a lot of time, money, and effort trying to figure out how to do this end-to-end.

Finance Database As a private investor, the sheer amount of information that can be found on the internet is rather daunting.

Introduction Please read the detailed docs This is the working project of the next generation Guillotina server based on asyncio. Dependencies Python

⚾ Automatically overlaying pitch motion and trajectory with machine learning! This project takes your baseball pitching clips and automatically genera

WILDS is a benchmark of in-the-wild distribution shifts spanning diverse data modalities and applications, from tumor identification to wildlife monitoring to poverty mapping.

VisualizingTwitchCommunities This project maps communities of streamers on Twitch.tv based on shared viewership. The data is collected from the Twitch

Here are a bunch of scripts that I created some time ago as a proof of concept that Betaflight blackbox gyro data can be converted to GoPro Metadata F

Xiami Exporter 导出虾米音乐的个人数据，功能： 导出歌曲为 json 收藏歌曲 收藏专辑 播放列表 导出收藏艺人为 json 导出收藏专辑为 json 导出播放列表为 json (个人和收藏) 将导出的数据整理至 sqlite 数据库 收藏歌曲 收藏艺人 收藏专辑 播放列表 下载已导出

Hyrule Compendium API An API serving data on all creatures, monsters, materials, equipment, and treasure in The Legend of Zelda: Breath of the Wild. B

Soda SQL Data testing, monitoring and profiling for SQL accessible data. What does Soda SQL do? Soda SQL allows you to Stop your pipeline when bad dat

SynthSR This repository contains code to train a Convolutional Neural Network (CNN) for Super-resolution (SR), or joint SR and data synthesis. The met

C2F-FWN data/code repository of "C2F-FWN: Coarse-to-Fine Flow Warping Network for Spatial-Temporal Consistent Motion Transfer" (https://arxiv.org/abs/

Data Structure and Algorithms with Python This repository is related to the Arabic tutorial here, within the tutorial we discuss the common data struc

pydatagovgr An unofficial Pythonic client for the official data.gov.gr API. Aims to be an easy, intuitive and out-of-the-box way to: find data publish

pYNAB A minimalistic library designed to provide native access to YNAB data from Python. Install The simplest way is to install the latest version fro

Sportradar APIs This is a Python wrapper for the sports APIs provided by Sportradar. You'll need to sign up for an API key to use the service. Sportra

sodapy sodapy is a python client for the Socrata Open Data API. Installation You can install with pip install sodapy. If you want to install from sour

mlbgame mlbgame is a Python API to retrieve and read MLB GameDay data. mlbgame works with real time data, getting information as games are being playe

Light Gradient Boosting Machine LightGBM is a gradient boosting framework that uses tree based learning algorithms. It is designed to be distributed a

itunespy itunespy is a simple library to fetch data from the iTunes Store API made for Python 3.5 and beyond. Important: Since version 1.6 itunespy no

Stock Analysis Engine Build and tune investment algorithms for use with artificial intelligence (deep neural networks) with a distributed stack for ru

iexfinance Python SDK for IEX Cloud. Architecture mirrors that of the IEX Cloud API (and its documentation). An easy-to-use toolkit to obtain data for

Mimesis - Fake Data Generator Description Mimesis is a high-performance fake data generator for Python, which provides data for a variety of purposes

Faker is a Python package that generates fake data for you. Whether you need to bootstrap your database, create good-looking XML documents, fill-in yo

About Generate fake but valid data filled databases for test purposes using most popular patterns(AFAIK). Current support is sqlite, mysql, postgresql

Mimesis - Fake Data Generator Description Mimesis is a high-performance fake data generator for Python, which provides data for a variety of purposes

Faker is a Python package that generates fake data for you. Whether you need to bootstrap your database, create good-looking XML documents, fill-in yo

About Generate fake but valid data filled databases for test purposes using most popular patterns(AFAIK). Current support is sqlite, mysql, postgresql

pyexcel - Let you focus on data, instead of file formats Support the project If your company has embedded pyexcel and its components into a revenue ge

About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an

Created by Stephen McDonald Introduction HOT Redis is a wrapper library for the redis-py client. Rather than calling the Redis commands directly from

dataset: databases for lazy people In short, dataset makes reading and writing data in databases as simple as reading and writing JSON files. Read the

ItsDangerous ... so better sign this Various helpers to pass data to untrusted environments and to get it back safe and sound. Data is cryptographical

Boltons boltons should be builtins. Boltons is a set of over 230 BSD-licensed, pure-Python utilities in the same spirit as — and yet conspicuously mis

Welcome to TensorWatch TensorWatch is a debugging and visualization tool designed for data science, deep learning and reinforcement learning from Micr

Dash Dash is the most downloaded, trusted Python framework for building ML & data science web apps. Built on top of Plotly.js, React and Flask, Dash t

Table of contents Overview Installation Usage Document Try PyCM in Your Browser Issues & Bug Reports Todo Outputs Dependencies Contribution References

Installation | Documentation | Gitter Chat | Google Group Bowtie Introduction Bowtie is a library for writing dashboards in Python. No need to know we

Welcome to Scikit-plot Single line functions for detailed visualizations The quickest and easiest way to go from analysis... ...to this. Scikit-plot i

Dora Exploratory data analysis toolkit for Python. Contents Summary Setup Usage Reading Data & Configuration Cleaning Feature Selection & Extraction V

Superset A modern, enterprise-ready business intelligence web application. Why Superset? | Supported Databases | Installation and Configuration | Rele

windml Build status : The importance of wind in smart grids with a large number of renewable energy resources is increasing. With the growing infrastr

emcee The Python ensemble sampling toolkit for affine-invariant MCMC emcee is a stable, well tested Python implementation of the affine-invariant ense

Blaze translates a subset of modified NumPy and Pandas-like syntax to databases and other computing systems. Blaze allows Python users a familiar inte

PyQtGraph A pure-Python graphics library for PyQt5/PyQt6/PySide2/PySide6 Copyright 2020 Luke Campagnola, University of North Carolina at Chapel Hill h

Basic Utilities for PyTorch Natural Language Processing (NLP) PyTorch-NLP, or torchnlp for short, is a library of basic utilities for PyTorch NLP. tor

gensim – Topic Modelling in Python Gensim is a Python library for topic modelling, document indexing and similarity retrieval with large corpora. Targ

Yase Yet Another Sequence Encoder - encode sequences to vector of vectors in python ! Why Yase ? Yase enable you to encode any sequence which can be r

spaCy: Industrial-strength NLP spaCy is a library for advanced Natural Language Processing in Python and Cython. It's built on the very latest researc

A Python package implementing a new model for text classification with visualization tools for Explainable AI 🍣 Online live demos: http://tworld.io/s

Rosetta Tools for data science with a focus on text processing. Focuses on "medium data", i.e. data too big to fit into memory but too small to necess

Note: We just launched Hosted, where anyone can upload their interface for permanent hosting. Check it out! Welcome to Gradio Quickly create customiza

Welcome to sktime A unified framework for machine learning with time series We provide specialized time series algorithms and scikit-learn compatible

PyGrid is a peer-to-peer network of data owners and data scientists who can collectively train AI models using PySyft. PyGrid is also the central serv

A library for computing on data you do not own and cannot see PySyft is a Python library for secure and private Deep Learning. PySyft decouples privat

MLJAR Automated Machine Learning Documentation: https://supervised.mljar.com/ Source Code: https://github.com/mljar/mljar-supervised Table of Contents

scikit-multiflow is a machine learning package for streaming data in Python. creme and scikit-multiflow are merging into a new project called River. W

In a nutshell River is a Python library for online machine learning. It is the result of a merger between creme and scikit-multiflow. River's ambition

MiraiML Mirai: future in japanese. MiraiML is an asynchronous engine for continuous & autonomous machine learning, built for real-time usage. Usage In

StellarGraph Machine Learning Library StellarGraph is a Python library for machine learning on graphs and networks. Table of Contents Introduction Get

Recommenders What's New (February 4, 2021) We have a new relase Recommenders 2021.2! It comes with lots of bug fixes, optimizations and 3 new algorith

What is xLearn? xLearn is a high performance, easy-to-use, and scalable machine learning package that contains linear model (LR), factorization machin

Website | Documentation | Tutorials | Installation | Release Notes CatBoost is a machine learning method based on gradient boosting over decision tree

Machine Learning From Scratch About Python implementations of some of the fundamental Machine Learning models and algorithms from scratch. The purpose

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate. Website • Key Features • How To Use • Docs •

Xcessiv Xcessiv is a tool to help you create the biggest, craziest, and most excessive stacked ensembles you can think of. Stacked ensembles are simpl

TFLearn: Deep learning library featuring a higher-level API for TensorFlow. TFlearn is a modular and transparent deep learning library built on top of