Python Graph-representation Resources

Junction Tree Variational Autoencoder for Molecular Graph Generation Official implementation of our Junction Tree Variational Autoencoder https://arxi

MINERVA Meandering In Networks of Entities to Reach Verisimilar Answers Code and models for the paper Go for a Walk and Arrive at the Answer - Reasoni

Neural Activation Coding This repository contains the code for the paper "Unsupervised Representation Learning via Neural Activation Coding" published

CCasGNN A new framework, collaborative cascade prediction based on graph neural networks (CCasGNN) to jointly utilize the structural characteristics,

Graph Neural Controlled Differential Equations for Traffic Forecasting Setup Python environment for STG-NCDE Install python environment $ conda env cr

SSVC The source code for paper [Suppressing Static Visual Cues via Normalizing Flows for Self-Supervised Video Representation Learning] samples of the

Graph WaveNet for brain network analysis This is the implementation of the Graph WaveNet model used in our manuscript: S. Wein , A. Schüller, A. M. To

CRGNN Paper ： Improving the Training of Graph Neural Networks with Consistency Regularization Environments Implementing environment: GeForce RTX™ 3090

COCO-LM This repository contains the scripts for fine-tuning COCO-LM pretrained models on GLUE and SQuAD 2.0 benchmarks. Paper: COCO-LM: Correcting an

README Needs to be improved Prerequisites Need to have graphiz installed on the machine. Refer to https://graphviz.readthedocs.io/en/stable/manual.htm

Federated learning on graph, especially on graph neural networks (GNNs), knowledge graph, and private GNN.

Papers about explainability of GNNs

subgraph-extractor Extracts data from the database for a graph-node and stores it in parquet files Installation For developing, it's recommended to us

Intro Real-time object detection and classification. Paper: version 1, version 2. Read more about YOLO (in darknet) and download weight files here. In

ASCII Graph Plotter Plots the graph of a function with ASCII characters. See the change log here. Developed by InformaticFreak (c) 2021 How to use py

    VarCLR: Variable Representation Pre-training via Contrastive Learning New: Paper accepted by ICSE 2022. Preprint at arXiv! This repository contain

FaRL for Facial Representation Learning This repo hosts official implementation of our paper General Facial Representation Learning in a Visual-Lingui

Graph Posterior Network This is the official code repository to the paper Graph Posterior Network: Bayesian Predictive Uncertainty for Node Classifica

Convert ONNX model graph to Keras model format.

CTO (Call Tree Overviewer) CTO (Call Tree Overviewer) is an IDA plugin for creating a simple and efficiant function call tree graph. It can also summa

CAPGNN Source code and dataset of the paper "Contrastive Adaptive Propagation Graph Neural Networks forEfficient Graph Learning" Paper URL: https://ar

TC-GNN (Running Sparse GNN on Dense Tensor Core on Ampere GPU) Cite this project and paper. @inproceedings{TC-GNN, title={TC-GNN: Accelerating Spars

Open-CyKG: An Open Cyber Threat Intelligence Knowledge Graph Model Description Open-CyKG is a framework that is constructed using an attenti

Unsupervised Object-Level Representation Learning from Scene Images This repository contains the official PyTorch implementation of the ORL algorithm

Decoupled Spatial-Temporal Graph Neural Networks Code for our paper: Decoupled Dynamic Spatial-Temporal Graph Neural Network for Traffic Forecasting.

Permutation Invariant Graph Generation via Score-Based Generative Modeling This repo contains the official implementation for the paper Permutation In

Molecular Mechanics-Driven Graph Neural Network with Multiplex Graph for Molecular Structures Code for the Multiplex Molecular Graph Neural Network (M

Efficient Graph Similarity Computation - (EGSC) This repo contains the source code and dataset for our paper: Slow Learning and Fast Inference: Effici

HALO: A Skeleton-Driven Neural Occupancy Representation for Articulated Hands Oral Presentation, 3DV 2021 Korrawe Karunratanakul, Adrian Spurr, Zicong

Reminder ST-GCN has transferred to MMSkeleton, and keep on developing as an flexible open source toolbox for skeleton-based human understanding. You a

slam-playground Educational 2D SLAM implementation based on ICP and Pose Graph How to use: Use keyboard arrow keys to navigate robot. Press 'r' to vie

ERNIE Source code and dataset for "ERNIE: Enhanced Language Representation with Informative Entities" Reqirements: Pytorch=0.4.1 Python3 tqdm boto3 r

To run a generation experiment (either conceptnet or atomic), follow these instructions: First Steps First clone, the repo: git clone https://github.c

K-BERT Sorce code and datasets for "K-BERT: Enabling Language Representation with Knowledge Graph", which is implemented based on the UER framework. R

KEPLER: A Unified Model for Knowledge Embedding and Pre-trained Language Representation Source code for TACL 2021 paper KEPLER: A Unified Model for Kn

VL-BERT By Weijie Su, Xizhou Zhu, Yue Cao, Bin Li, Lewei Lu, Furu Wei, Jifeng Dai. This repository is an official implementation of the paper VL-BERT:

UNITER: UNiversal Image-TExt Representation Learning This is the official repository of UNITER (ECCV 2020). This repository currently supports finetun

VILLA: Vision-and-Language Adversarial Training This is the official repository of VILLA (NeurIPS 2020 Spotlight). This repository currently supports

DOC | Quick Start | 中文 Breaking News !! 🔥 🔥 🔥 OGB-LSC KDD CUP 2021 winners announced!! (2021.06.17) Super excited to announce our PGL team won TWO

This repository is an official PyTorch(Geometric) implementation of G^2GNN in "Imbalanced Graph Classification via Graph-of-Graph Neural Networks". Th

Efficient Graph Similarity Computation - (EGSC) This repo contains the source code and dataset for our paper: Slow Learning and Fast Inference: Effici

Knowledge-enhanced Contrastive Learning (KCL) Molecular Contrastive Learning with Chemical Element Knowledge Graph [ AAAI 2022 ]. We construct a Chemi

Score Transformer This is the official repository for "Score Transformer": Score Transformer: Generating Musical Scores from Note-level Representation

bitlist Minimal Python library for working with bit vectors natively. Purpose This library allows programmers to work with a native representation of

GSAN Introduction Code for paper GSAN: Graph Self-Attention Network for Learning Spatial-Temporal Interaction Representation in Autonomous Driving, wh

ts2vg: Time series to visibility graphs The Python ts2vg package provides high-performance algorithm implementations to build visibility graphs from t

PLUR (Programming-Language Understanding and Repair) is a collection of source code datasets suitable for graph-based machine learning. We provide scripts for downloading, processing, and loading the datasets. This is done by offering a unified API and data structures for all datasets.

A Light CNN for Deep Face Representation with Noisy Labels Citation If you use our models, please cite the following paper: @article{wulight, title=

#Sentic GCN Introduction This repository was used in our paper: Aspect-Based Sentiment Analysis via Affective Knowledge Enhanced Graph Convolutional N

multilingual-mrc-isdg Code for the AAAI 2022 paper "Zero-Shot Cross-Lingual Machine Reading Comprehension via Inter-Sentence Dependency Graph". This r

Self-Supervised Graph Representation Learning via Topology Transformations This repository is the official PyTorch implementation of the following pap

decentralized-gnn A package for implementing and simulating decentralized Graph Neural Network algorithms for classification of peer-to-peer nodes. De

Decoding the Protein-ligand Interactions Using Parallel Graph Neural Networks Requirements python 0.10+ rdkit 2020.03.3.0 biopython 1.78 openbabel 2.4

Representation Learning on Spatial Networks This repository is the official implementation of Representation Learning on Spatial Networks. Training Ex

Adversarial Attacks on Graph Classification via Bayesian Optimisation @ NeurIPS 2021 This repository contains the official implementation of GRABNEL,

Discovering Dynamic Salient Regions with Spatio-Temporal Graph Neural Networks This is the official code for DyReg model inroduced in Discovering Dyna

Impression-Learning-Camera-Ready Camera ready code repo for the NeuRIPS 2021 paper: "Impression learning: Online representation learning with synaptic

Graph Neural Topic Model (GNTM) This is the pytorch implementation of the paper "Topic Modeling Revisited: A Document Graph-based Neural Network Persp

Graph Augmentation Graph augmentation/self-supervision/etc. Algorithms gcn gcn+virtual node gin gin+virtual node PNA GraphTrans Augmentation methods N

This is an official Pytorch implementation of the approaches proposed in: Han Peng, Ge Li, Wenhan Wang, Yunfei Zhao, Zhi Jin “Integrating Tree Path in

ReFine: Multi-Grained Explainability for GNNs We are trying hard to update the code, but it may take a while to complete due to our tight schedule rec

EIGNN: Efficient Infinite-Depth Graph Neural Networks The official implementation of EIGNN: Efficient Infinite-Depth Graph Neural Networks (NeurIPS 20

Directed Graph Contrastive Learning Paper | Poster | Supplementary The PyTorch implementation of Directed Graph Contrastive Learning (DiGCL). In this

PSWE: Pooling by Sliced-Wasserstein Embedding (NeurIPS 2021) PSWE is a permutation-invariant feature aggregation/pooling method based on sliced-Wasser

Code for "Solving Graph-based Public Good Games with Tree Search and Imitation Learning" This is the code for the paper Solving Graph-based Public Goo

Large-scale pre-trained language models (PLMs) such as BERT and GPT have achieved great success and become a milestone in NLP.

PyDGN Wiki Description This is a Python library to easily experiment with Deep Graph Networks (DGNs). It provides automatic management of data splitti

Swin-Transformer Swin-Transformer is basically a hierarchical Transformer whose representation is computed with shifted windows. For more details, ple

Description Small wrapper around 3dmol.js and html2canvas for creating self-contained HTML files that display a 3D molecular representation. Double cl

ESP32-IoT-button-graph-test ESP32 recording button presses, and serving webpage via webSockets in order to graph the responses. The objective was to t

GraphRNN: Generating Realistic Graphs with Deep Auto-regressive Model This repository is the official PyTorch implementation of GraphRNN, a graph gene

ContourletNet: A Generalized Rain Removal Architecture Using Multi-Direction Hierarchical Representation (Accepted by BMVC'21) Abstract: Images acquir

KDD CUP 2020: AutoGraph Team: aister Members: Jianqiang Huang, Xingyuan Tang, Mingjian Chen, Jin Xu, Bohang Zheng, Yi Qi, Ke Hu, Jun Lei Team Introduc

Repository for the paper "Graph Auto-Encoders for Financial Clustering" Requirements Python 3.6 torch torch_geometric Instructions This is a simple c

🔍 E-Commerce recommender demo 🔍 This is a simple stream setup that uses Memgraph to ingest real-time data from a simulated online store. Data is str

DirectVoxGO reconstructs a scene representation from a set of calibrated images capturing the scene. We achieve NeRF-comparable novel-view synthesis quality with super-fast convergence.

Steps to run = Download the cora dataset from this link : https://linqs.soe.ucsc.edu/data unzip the files in the folder input/cora cd code python eda

OANet implementation Pytorch implementation of OANet for ICCV'19 paper "Learning Two-View Correspondences and Geometry Using Order-Aware Network", by

Calculator 🖩 A simple calculator written in python allows you to make simple calculations, write charts, calculate the dates, and exchange currency.

Deep High-Resolution Representation Learning for Human Pose Estimation (accepted to CVPR2019) News If you are interested in internship or research pos

SPTAG: A library for fast approximate nearest neighbor search SPTAG SPTAG (Space Partition Tree And Graph) is a library for large scale vector approxi

This repository holds the implementation for paper Towards Open-World Feature Extrapolation: An Inductive Graph Learning Approach Download our preproc

Parameterized Hypercomplex Graph Neural Networks (PHC-GNNs) PHC-GNNs (Le et al., 2021): https://arxiv.org/abs/2103.16584 PHM Linear Layer Illustration

SSR (NeurIPS 2021) Pytorch implementation of paper "Re-ranking for image retrieval and transductivefew-shot classification" [Paper] [Project webpage]

SAGCN - Official PyTorch Implementation | Paper | Project Page This is the official implementation of the paper "Steganographer detection via a simila

g2o - General Graph Optimization Linux: Windows: g2o is an open-source C++ framework for optimizing graph-based nonlinear error functions. g2o has bee

DeepSDF This is an implementation of the CVPR '19 paper "DeepSDF: Learning Continuous Signed Distance Functions for Shape Representation" by Park et a

ADGC: Awesome Deep Graph Clustering ADGC is a collection of state-of-the-art (SOTA), novel deep graph clustering methods (papers, codes and datasets).

Orbitals in Python A small collection of tools made by me, that you can use to visualize atomic orbitals in both 2D and 3D in different aspects, and o

SURGE: Sequential Recommendation with Graph Neural Networks This is our TensorFlow implementation for the paper: Sequential Recommendation with Graph

MassFormer This is the original implementation of MassFormer, a graph transformer for small molecule MS/MS prediction. Check out the preprint on arxiv

Predicting Osteoarthritis Progression via Unsupervised Adversarial Representation Learning (c) Tianyu Han and Daniel Truhn, RWTH Aachen University, 20

ChebLieNet: Invariant spectral graph NNs turned equivariant by Riemannian geometry on Lie groups Hugo Aguettaz, Erik J. Bekkers, Michaël Defferrard We

Dynamic-Graphs-Construction Official Codes for Graph Modularity:Towards Understanding the Cross-Layer Transition of Feature Representations in Deep Ne

2s-AGCN Two-Stream Adaptive Graph Convolutional Networks for Skeleton-Based Action Recognition in CVPR19 Note PyTorch version should be 0.3! For PyTor

Fine-grained Sentiment Analysis as Dependency Graph Parsing This repository contains the code and datasets described in following paper: Fine-grained

SwisE Switch spaces for knowledge graph embeddings. Requirements: python3 pytorch numpy tqdm Reproduce the results To reproduce the reported results,

DirectVoxGO reconstructs a scene representation from a set of calibrated images capturing the scene. We achieve NeRF-comparable novel-view synthesis quality with super-fast convergence.

Graph Convolutional Gated Recurrent Neural Network (GCGRNN) Improved from Graph Convolutional Neural Networks with Data-driven Graph Filter (GCNN-DDGF

BENDR BErt-like Neurophysiological Data Representation This repository contains the source code for reproducing, or extending the BERT-like self-super