13 Repositories
Python sars-cov-2 Libraries
SARS-Cov-2 Recombinant Finder for fasta sequences
Sc2rf - SARS-Cov-2 Recombinant Finder Pronounced: Scarf What's this? Sc2rf can search genome sequences of SARS-CoV-2 for potential recombinants - new
Analysis of Antarctica sequencing samples contaminated with SARS-CoV-2
Analysis of SARS-CoV-2 reads in sequencing of 2018-2019 Antarctica samples in PRJNA692319 The samples analyzed here are described in this preprint, wh
Compartmental epidemic model to assess undocumented infections: applications to SARS-CoV-2 epidemics in Brazil - Datasets and Codes
Compartmental epidemic model to assess undocumented infections: applications to SARS-CoV-2 epidemics in Brazil - Datasets and Codes The codes for simu
Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests β’ All countries β’ Updated daily by Our World in Data
COVID-19 Dataset by Our World in Data Find our data on COVID-19 and its documentation in public/data. Documentation Data: complete COVID-19 dataset Da
Sequence lineage information extracted from RKI sequence data repo
Pango lineage information for German SARS-CoV-2 sequences This repository contains a join of the metadata and pango lineage tables of all German SARS-
π¦ A simple and fast ( 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak.
π¦ A simple and fast ( 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the π₯ FastAPI framework. Supports multiple sources!
ONT Analysis Toolkit (OAT)
A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.
Automated mouse clicker script using PyAutoGUI and Typer.
clickpy Automated mouse clicker script using PyAutoGUI and Typer. This app will randomly click your mouse between 1 second and 3 minutes, to prevent y
Repo to store back end infrastructure for Message in a Bottle
Message in a Bottle Backend API RESTful API for Message in a Bottle frontend application consumption. About The Project β’ Tools Used β’ Local Set Up β’
Multi-modal co-attention for drug-target interaction annotation and Its Application to SARS-CoV-2
CoaDTI Multi-modal co-attention for drug-target interaction annotation and Its Application to SARS-CoV-2 Abstract Environment The test was conducted i
COVID-Net Open Source Initiative
The COVID-Net models provided here are intended to be used as reference models that can be built upon and enhanced as new data becomes available
Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.
SARS-CoV-2 processing requests Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide. Prerequisites This autom
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COVID-19API μ½λ‘λ λ°μ΄λ¬μ€ κ°μΌμ¦-19(COVID-19, SARS-CoV-2)μ κ΅λ΄/μΈ λ°μ λν₯ μ‘°ν API Corona Virus Infectious Disease-19 (COVID-19, SARS-CoV-2) outbreak trend inquiry