Python Sequencing Resources

Analysis of SARS-CoV-2 reads in sequencing of 2018-2019 Antarctica samples in PRJNA692319 The samples analyzed here are described in this preprint, wh

Pango lineage information for German SARS-CoV-2 sequences This repository contains a join of the metadata and pango lineage tables of all German SARS-

dragmap_meth (dragmap_meth.py) Alignment of BS-Seq reads using dragmap. Intro This works for single-end reads and for paired-end reads from the direct

A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.

ScisorWiz: Vizualizer for Differential Isoform Expression README ScisorWiz is a linux-based R-package for visualizing differential isoform expression

Cash in on Expressed Barcode Tags (EBTs) from NGS Sequencing Data with Python Cashier is a tool developed by Russell Durrett for the analysis and extr

HTSeq DEVS: https://github.com/htseq/htseq DOCS: https://htseq.readthedocs.io A Python library to facilitate programmatic analysis of data from high-t

MHtyper is an end-to-end pipeline for recognized the Forensic microhaplotypes in Nanopore sequencing data. It is implemented using Python.

cLoops2: full stack analysis tool for chromatin interactions Introduction cLoops2 is an extension of our previous work, cLoops. From loop-calling base

CRISPRanalysis InDels analysis of CRISPR lines by NGS amplicon sequencing technology for a multicopy gene family. In this work, we present a workflow

DeepConsensus DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS)

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