Python Data-Analytics-on-Genomes-and-Genetics Resources

What's new We have recently released ThunderGBM, a fast GBDT and Random Forest library on GPUs. add scikit-learn interface, see here Overview The miss

Neural Tangents ICLR 2020 Video | Paper | Quickstart | Install guide | Reference docs | Release notes Overview Neural Tangents is a high-level neural

fklearn: Functional Machine Learning fklearn uses functional programming principles to make it easier to solve real problems with Machine Learning. Th

The SHOGUN machine learning toolbox Unified and efficient Machine Learning since 1999. Latest release: Cite Shogun: Develop branch build status: Donat

What is xLearn? xLearn is a high performance, easy-to-use, and scalable machine learning package that contains linear model (LR), factorization machin

Overview | Tutorials | Examples | Installation | FAQ | How to Cite Welcome to ktrain News and Announcements 2020-11-08: ktrain v0.25.x is released and

This video in better quality. einops Flexible and powerful tensor operations for readable and reliable code. Supports numpy, pytorch, tensorflow, and

Translated in 🇰🇷 Korean/ Ludwig is a toolbox that allows users to train and test deep learning models without the need to write code. It is built on

TL;DR Ignite is a high-level library to help with training and evaluating neural networks in PyTorch flexibly and transparently. Click on the image to

This is the Vowpal Wabbit fast online learning code. Why Vowpal Wabbit? Vowpal Wabbit is a machine learning system which pushes the frontier of machin

TFLearn: Deep learning library featuring a higher-level API for TensorFlow. TFlearn is a modular and transparent deep learning library built on top of

Website | Documentation | Tutorials | Installation | Release Notes CatBoost is a machine learning method based on gradient boosting over decision tree

JAX: Autograd and XLA Quickstart | Transformations | Install guide | Neural net libraries | Change logs | Reference docs | Code search News: JAX tops

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate. Website • Key Features • How To Use • Docs •

============================================================================================================ `MILA will stop developing Theano https:

Apache MXNet (incubating) for Deep Learning Apache MXNet is a deep learning framework designed for both efficiency and flexibility. It allows you to m

Light Gradient Boosting Machine LightGBM is a gradient boosting framework that uses tree based learning algorithms. It is designed to be distributed a

eXtreme Gradient Boosting Community | Documentation | Resources | Contributors | Release Notes XGBoost is an optimized distributed gradient boosting l

Keras: Deep Learning for Python Under Construction In the near future, this repository will be used once again for developing the Keras codebase. For

About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an

Apache Spark Spark is a unified analytics engine for large-scale data processing. It provides high-level APIs in Scala, Java, Python, and R, and an op

PyTorch is a Python package that provides two high-level features: Tensor computation (like NumPy) with strong GPU acceleration Deep neural networks b

scikit-learn is a Python module for machine learning built on top of SciPy and is distributed under the 3-Clause BSD license. The project was started

See trending stock tickers on Reddit and check Stock perfomance

Flask-Pundit A simple flask extension to organize resource authorization and scoping. This extension is heavily inspired by the ruby Pundit library. I

Note This project is non maintained anymore. Consider the Flask-Security-Too project as an alternative. Flask-Security It quickly adds security featur

Flask-Potion Description Flask-Potion is a powerful Flask extension for building RESTful JSON APIs. Potion features include validation, model resource

Flask RestPlus IMPORTANT NOTICE: This project has been forked to Flask-RESTX and will be maintained by by the python-restx organization. Flask-RESTPlu

The Mixer is a helper to generate instances of Django or SQLAlchemy models. It's useful for testing and fixture replacement. Fast and convenient test-

FastAPI Security Implements authentication and authorization as dependencies in FastAPI. Features Authentication via JWT-based OAuth 2 access tokens a

Starlette-OpenTracing OpenTracing support for Starlette and FastApi. Inspired by: Flask-OpenTracing OpenTracing implementations exist for major distri

starlette context Middleware for Starlette that allows you to store and access the context data of a request. Can be used with logging so logs automat

Diamond Diamond is a python daemon that collects system metrics and publishes them to Graphite (and others). It is capable of collecting cpu, memory,

scalene: a high-performance CPU and memory profiler for Python by Emery Berger 中文版本 (Chinese version) About Scalene % pip install -U scalene Scalen

README for pympler Before installing Pympler, try it with your Python version: python setup.py try If any errors are reported, check whether your Pyt

Glances - An eye on your system Summary Glances is a cross-platform monitoring tool which aims to present a large amount of monitoring information thr

Home Install Documentation Download Forum Blog Funding What's new Summary psutil (process and system utilities) is a cross-platform library for retrie

Buildout Buildout is a project designed to solve 2 problems: Application-centric assembly and deployment Assembly runs the gamut from stitching togeth

PyOxidizer PyOxidizer is a utility for producing binaries that embed Python. The over-arching goal of PyOxidizer is to make complex packaging and dist

About cx_Freeze cx_Freeze creates standalone executables from Python scripts, with the same performance, is cross-platform and should work on any plat

py2app is a Python setuptools command which will allow you to make standalone Mac OS X application bundles and plugins from Python scripts. py2app is

PEX Contents Overview Installation Simple Examples Integrating pex into your workflow Documentation Development Contributing Overview pex is a library

Nuitka User Manual Contents Overview Usage Requirements Command Line Installation License Tutorial Setup and build on Windows Setup Install Python Ins

pytest-play pytest-play is a codeless, generic, pluggable and extensible automation tool, not necessarily test automation only, based on the fantastic

pytest-datadir pytest plugin for manipulating test data directories and files. Usage pytest-datadir will look up for a directory with the name of your

pytest-watch -- Continuous pytest runner pytest-watch a zero-config CLI tool that runs pytest, and re-runs it when a file in your project changes. It

pytest-randomly Pytest plugin to randomly order tests and control random.seed. Features All of these features are on by default but can be disabled wi

🎭 Playwright for Python Docs | API Playwright is a Python library to automate Chromium, Firefox and WebKit browsers with a single API. Playwright del

pytest-sugar pytest-sugar is a plugin for pytest that shows failures and errors instantly and shows a progress bar. Requirements You will need the fol

DDT (Data-Driven Tests) allows you to multiply one test case by running it with different test data, and make it appear as multiple test cases. Instal

xdist: pytest distributed testing plugin The pytest-xdist plugin extends pytest with some unique test execution modes: test run parallelization: if yo

tox automation project Command line driven CI frontend and development task automation tool At its core tox provides a convenient way to run arbitrary

MkDocs Awesome Pages Plugin An MkDocs plugin that simplifies configuring page titles and their order The awesome-pages plugin allows you to customize

sphinx-autobuild Rebuild Sphinx documentation on changes, with live-reload in the browser. Installation sphinx-autobuild is available on PyPI. It can

Breathe Packagers: PGP signing key changes for Breathe = v4.23.0. https://github.com/michaeljones/breathe/issues/591 This is an extension to reStruct

PrettyTable Installation Install via pip: python -m pip install -U prettytable Install latest development version: python -m pip install -U git+https

alive-progress :) A new kind of Progress Bar, with real-time throughput, eta and very cool animations! Ever found yourself in a remote ssh session, do

better-exceptions Pretty and more helpful exceptions in Python, automatically. Usage Install better_exceptions via pip: $ pip install better_exception

Text progress bar library for Python. Travis status: Coverage: Install The package can be installed through pip (this is the recommended method): pip

python-tabulate Pretty-print tabular data in Python, a library and a command-line utility. The main use cases of the library are: printing small table

Rich 中文 readme • lengua española readme • Läs på svenska Rich is a Python library for rich text and beautiful formatting in the terminal. The Rich API

tqdm tqdm derives from the Arabic word taqaddum (تقدّم) which can mean "progress," and is an abbreviation for "I love you so much" in Spanish (te quie

A command-line application for tracking, reporting on complexity of Python tests and applications. wily [a]: quick to think of things, having a very g

prospector About Prospector is a tool to analyse Python code and output information about errors, potential problems, convention violations and comple

Pyflow Simple is better than complex - The Zen of Python Pyflow streamlines working with Python projects and files. It's an easy-to-use CLI app with a

pipx — Install and Run Python Applications in Isolated Environments Documentation: https://pipxproject.github.io/pipx/ Source Code: https://github.com

Poetry: Dependency Management for Python Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right sta

Conda is a cross-platform, language-agnostic binary package manager. It is the package manager used by Anaconda installations, but it may be used for

pyenv installer This tool installs pyenv and friends. It is inspired by rbenv-installer. Prerequisites In general, compiling your own Python interpret

Dlint Dlint is a tool for encouraging best coding practices and helping ensure Python code is secure. The most important thing I have done as a progra

sqlmap sqlmap is an open source penetration testing tool that automates the process of detecting and exploiting SQL injection flaws and taking over of

add-trailing-comma A tool (and pre-commit hook) to automatically add trailing commas to calls and literals. Installation pip install add-trailing-comm

pyupgrade A tool (and pre-commit hook) to automatically upgrade syntax for newer versions of the language. Installation pip install pyupgrade As a pre

autoflake Introduction autoflake removes unused imports and unused variables from Python code. It makes use of pyflakes to do this. By default, autofl

Jedi - an awesome autocompletion, static analysis and refactoring library for Python Jedi is a static analysis tool for Python that is typically used

cachetools This module provides various memoizing collections and decorators, including variants of the Python Standard Library's @lru_cache function

flake8-bandit Automated security testing built right into your workflow! You already use flake8 to lint all your code for errors, ensure docstrings ar

Mypy type stubs for NumPy, pandas, and Matplotlib This is a PEP-561-compliant stub-only package which provides type information for matplotlib, numpy

"Always code as if the guy who ends up maintaining your code will be a violent psychopath who knows where you live." ― John F. Woods coala provides a

wemake-python-styleguide Welcome to the strictest and most opinionated python linter ever. wemake-python-styleguide is actually a flake8 plugin with s

flake8-bugbear A plugin for Flake8 finding likely bugs and design problems in your program. Contains warnings that don't belong in pyflakes and pycode

Mypy: Optional Static Typing for Python Got a question? Join us on Gitter! We don't have a mailing list; but we are always happy to answer questions o

lazydata: scalable data dependencies lazydata is a minimalist library for including data dependencies into Python projects. Problem: Keeping all data

mongo-connector The mongo-connector project originated as a MongoDB mongo-labs project and is now community-maintained under the custody of YouGov, Pl

DEPOT - File Storage Made Easy DEPOT is a framework for easily storing and serving files in web applications on Python2.6+ and Python3.2+. DEPOT suppo

AWS Data Wrangler Pandas on AWS Easy integration with Athena, Glue, Redshift, Timestream, QuickSight, Chime, CloudWatchLogs, DynamoDB, EMR, SecretMana

Cloudant Python Client This is the official Cloudant library for Python. Installation and Usage Getting Started API Reference Related Documentation De

PyPika - Python Query Builder Abstract What is PyPika? PyPika is a Python API for building SQL queries. The motivation behind PyPika is to provide a s

Apache Libcloud - a unified interface for the cloud Apache Libcloud is a Python library which hides differences between different cloud provider APIs

dataset: databases for lazy people In short, dataset makes reading and writing data in databases as simple as reading and writing JSON files. Read the

pandas-gbq pandas-gbq is a package providing an interface to the Google BigQuery API from pandas Installation Install latest release version via conda

peewee Peewee is a simple and small ORM. It has few (but expressive) concepts, making it easy to learn and intuitive to use. a small, expressive ORM p

(This library is available under a free and permissive license however, if you Enjoy Dear PyGui please consider becoming a Sponsor) Dear PyGui is a si

Flexx Want to stay up-to-date about (changes to) Flexx? Subscribe to the NEWS issue. Introduction Flexx is a pure Python toolkit for creating graphica

Kivy Innovative user interfaces made easy. Kivy is an open source, cross-platform Python framework for the development of applications that make use o

Cleo Create beautiful and testable command-line interfaces. Cleo is mostly a higher level wrapper for CliKit, so a lot of the components and utilities

ASCIIMATICS Asciimatics is a package to help people create full-screen text UIs (from interactive forms to ASCII animations) on any platform. It is li

ConfigArgParse Overview Applications with more than a handful of user-settable options are best configured through a combination of command line args,

argcomplete - Bash tab completion for argparse Tab complete all the things! Argcomplete provides easy, extensible command line tab completion of argum

Rich 中文 readme • lengua española readme • Läs på svenska Rich is a Python library for rich text and beautiful formatting in the terminal. The Rich API